Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Forward (+)

63182598 .. 63184511

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004865

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCCATCATCCACTCTCTCTCTTTCTTCCCCTTCCCATTCCACTTCTGATTTCAATTCCAAGTCCTCCGACTCCTCCATCCGAAGAAGCAACCTTAGCCGTGTTTGCACTCGTCCGGCGGCCCTCCGCCTCGGCATTGTCATTGACCTCGTCGGCGCGTTGTGGGTGCATCCGGACGAGTCTGATTGTCCATCCATCGGGGACGGGTTTGAGGTGAGATTGTTGGGCTCTCAATCAGATGGATCCGATCTGGATCGCTGGGATTTGAGAGAAGTGGCTGAGGAGATCGCGGCTGATGGCGAGCGGTGGTCTAGTACTCTTTGGCGGGGTCGGCGGATGAAGCTGTTGTCGTGGGGCTGGCCAGAAGTCGCTAGTTTGGGAGCAAGGTTGGGATCCTACGAAGTCAATAGCGGAGGAACGATGGCTAACCTACTATGGGTTGGATCTATGGGTGATCCCAGATCTGATTTGGGTAGAATGATGGCCAGGAGCCTAGGTTCCAAGGCTAGTGGAGTGCTGATGACGGCGGCAACCCGAAATAAGTGGAGGTGCGACGGAGGTGACAGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.6

Weight (kDa)

6.74

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	304
AccII	CGCG	2 cut(s)	158, 290
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	8 cut(s)	119, 127, 290, 304, 325, 334, 411, 527
AclWI	GGATC	7 cut(s)	237, 250, 261, 387, 400, 449, 451
AcoI	YGGCCR	2 cut(s)	359, 483
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	197, 436
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	485
AloI	GAACNNNNNNTCC	2 cut(s)	481, 513
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
AlwI	GGATC	7 cut(s)	237, 250, 261, 387, 400, 449, 451
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	3 cut(s)	120, 359, 483
AspA2I	CCTAGG	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	3 cut(s)	226, 464, 572
AvrII	CCTAGG	1 cut(s)	493
BalI	TGGCCA	2 cut(s)	361, 485
BamHI	GGATCC	2 cut(s)	242, 392
BanII	GRGCYC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	279
BccI	CCATC	8 cut(s)	13, 86, 199, 203, 233, 290, 415, 475
BceAI	ACGGC	2 cut(s)	84, 540
BciT130I	CCWGG	1 cut(s)	487
BfaI	CTAG	4 cut(s)	312, 372, 494, 507
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	3 cut(s)	120, 291, 528
BlnI	CCTAGG	1 cut(s)	493
BlsI	GCNGC	3 cut(s)	121, 292, 529
BmcAI	AGTACT	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	4 cut(s)	244, 394, 491, 499
BmrFI	CCNGG	1 cut(s)	487
BmsI	GCATC	1 cut(s)	178
Bpu10I	CCTNAGC	2 cut(s)	95, 279
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	130, 493, 501
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 436
Bse8I	GATNNNNATC	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	3 cut(s)	130, 493, 501
BseGI	GGATG	5 cut(s)	8, 78, 169, 191, 342
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	197, 436
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	64, 296
BseYI	CCCAGC	1 cut(s)	258
Bsh1236I	CGCG	2 cut(s)	158, 290
BshFI	GGCC	3 cut(s)	122, 361, 485
BsiSI	CCGG	2 cut(s)	116, 173
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	197, 436
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	122, 361, 485
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	8 cut(s)	242, 247, 253, 285, 392, 443, 454, 461
BspACI	CCGC	8 cut(s)	119, 127, 290, 304, 325, 334, 411, 527
BspANI	GGCC	3 cut(s)	122, 361, 485
BspCNI	CTCAG	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	172
BspFNI	CGCG	2 cut(s)	158, 290
BspLI	GGNNCC	4 cut(s)	244, 394, 491, 499
BspPI	GGATC	7 cut(s)	237, 250, 261, 387, 400, 449, 451
BsrBI	CCGCTC	1 cut(s)	304
BssECI	CCNNGG	3 cut(s)	130, 493, 501
BssMI	GATC	8 cut(s)	242, 247, 253, 285, 392, 443, 454, 461
BssT1I	CCWWGG	2 cut(s)	493, 501
Bst2UI	CCWGG	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	302, 359
BstDEI	CTNAG	2 cut(s)	95, 279
BstF5I	GGATG	5 cut(s)	8, 78, 169, 191, 342
BstFNI	CGCG	2 cut(s)	158, 290
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	8 cut(s)	245, 250, 256, 288, 395, 446, 457, 464
BstMBI	GATC	8 cut(s)	242, 247, 253, 285, 392, 443, 454, 461
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 105, 331, 340
BstNI	CCWGG	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	485
BstUI	CGCG	2 cut(s)	158, 290
BstX2I	RGATCY	4 cut(s)	242, 392, 443, 461
BstYI	RGATCY	4 cut(s)	242, 392, 443, 461
BsuRI	GGCC	3 cut(s)	122, 361, 485
BtsCI	GGATG	5 cut(s)	8, 78, 169, 191, 342
Cac8I	GCNNGC	2 cut(s)	302, 359
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	315
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	2 cut(s)	95, 279
DpnI	GATC	8 cut(s)	244, 249, 255, 287, 394, 445, 456, 463
DpnII	GATC	8 cut(s)	242, 247, 253, 285, 392, 443, 454, 461
EaeI	YGGCCR	2 cut(s)	359, 483
EciI	GGCGGA	2 cut(s)	116, 349
Eco130I	CCWWGG	2 cut(s)	493, 501
Eco24I	GRGCYC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	485
EcoT14I	CCWWGG	2 cut(s)	493, 501
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	2 cut(s)	493, 501
FaiI	YATR	3 cut(s)	436, 449, 571
FaqI	GGGAC	1 cut(s)	215
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	120, 291, 528
FokI	GGATG	4 cut(s)	65, 156, 178, 349
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	120, 291, 528
FspBI	CTAG	4 cut(s)	312, 372, 494, 507
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	3 cut(s)	120, 291, 528
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	3 cut(s)	122, 361, 485
HapII	CCGG	2 cut(s)	116, 173
HhaI	GCGC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	2 cut(s)	71, 179
HpaII	CCGG	2 cut(s)	116, 173
HphI	GGTGA	3 cut(s)	226, 464, 572
Hpy188I	TCNGA	7 cut(s)	49, 70, 83, 184, 238, 247, 466
Hpy188III	TCNNGA	2 cut(s)	173, 251
Hpy99I	CGWCG	2 cut(s)	155, 557
HpyAV	CCTTC	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	108, 169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 105, 331, 340
HpyF3I	CTNAG	2 cut(s)	95, 279
HspAI	GCGC	1 cut(s)	156
Kpn2I	TCCGGA	1 cut(s)	172
Kzo9I	GATC	8 cut(s)	242, 247, 253, 285, 392, 443, 454, 461
LmnI	GCTCC	2 cut(s)	380, 489
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	4 cut(s)	312, 372, 494, 507
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	8 cut(s)	244, 249, 255, 287, 394, 445, 456, 463
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	8 cut(s)	242, 247, 253, 285, 392, 443, 454, 461
MboII	GAAGA	2 cut(s)	18, 96
MflI	RGATCY	4 cut(s)	242, 392, 443, 461
MhlI	GDGCHC	1 cut(s)	230
MlsI	TGGCCA	2 cut(s)	361, 485
MluCI	AATT	1 cut(s)	55
MluNI	TGGCCA	2 cut(s)	361, 485
MlyI	GAGTC	2 cut(s)	65, 188
MmeI	TCCRAC	2 cut(s)	93, 421
Mox20I	TGGCCA	2 cut(s)	361, 485
MroI	TCCGGA	1 cut(s)	172
MscI	TGGCCA	2 cut(s)	361, 485
Msp20I	TGGCCA	2 cut(s)	361, 485
MspI	CCGG	2 cut(s)	116, 173
MspR9I	CCNGG	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	487
MvnI	CGCG	2 cut(s)	158, 290
MwoI	GCNNNNNNNGC	4 cut(s)	96, 105, 331, 340
NdeII	GATC	8 cut(s)	242, 247, 253, 285, 392, 443, 454, 461
NlaIV	GGNNCC	4 cut(s)	244, 394, 491, 499
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	560
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	121, 292, 529
PleI	GAGTC	2 cut(s)	65, 187
PpsI	GAGTC	2 cut(s)	65, 187
Psp6I	CCWGG	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	4 cut(s)	244, 394, 491, 499
PspPI	GGNCC	1 cut(s)	121
PsuI	RGATCY	4 cut(s)	242, 392, 443, 461
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SatI	GCNGC	3 cut(s)	120, 291, 528
Sau3AI	GATC	8 cut(s)	242, 247, 253, 285, 392, 443, 454, 461
Sau96I	GGNCC	1 cut(s)	121
ScaI	AGTACT	1 cut(s)	316
SchI	GAGTC	2 cut(s)	65, 188
ScrFI	CCNGG	1 cut(s)	487
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	9 cut(s)	96, 150, 216, 345, 389, 432, 499, 551, 562
SfaNI	GCATC	1 cut(s)	178
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	8 cut(s)	119, 127, 290, 304, 325, 334, 411, 527
SspMI	CTAG	4 cut(s)	312, 372, 494, 507
StyD4I	CCNGG	1 cut(s)	485
StyI	CCWWGG	2 cut(s)	493, 501
TasI	AATT	1 cut(s)	55
TatI	WGTACW	1 cut(s)	314
TauI	GCSGC	3 cut(s)	122, 293, 530
TseFI	GTSAC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	570
Tth111I	GACNNNGTC	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmaJI	CCTAGG	1 cut(s)	493
XspI	CTAG	4 cut(s)	312, 372, 494, 507
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.