Rroxscaffold_2G00100500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010581
Physical Location & Seq
Forward (+)
22338551 .. 22344011
5461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100500.1

Sequence Viewer

Length: 192 bp
ATGAAGTTCACAACGCTGTTTCGCTATTCAACGGGCTGCGATGATGACGAAGATCGCCGCGATATGGCCGGAGGAGCCATGACCGATCCGACCGAGGTCCGGTCCGACTACGGTACTCTATACTCGTTCGGAGATCTAAAACCAAGAACAAGAATTTGGTCACCGAGACCGTGTTTTGCTCGACGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.37

Weight (kDa)

8.77

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 58
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 153
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 64, 99
AgsI TTSAA 1 cut(s) 30
AjuI GAANNNNNNNTTGG 2 cut(s) 139, 171
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 97, 102
AsuHPI GGTGA 1 cut(s) 153
AvaII GGWCC 2 cut(s) 97, 102
BbvI GCAGC 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 160
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 37, 58
BlsI GCNGC 2 cut(s) 38, 59
Bme18I GGWCC 2 cut(s) 97, 102
BmgT120I GGNCC 2 cut(s) 97, 102
BmiI GGNNCC 1 cut(s) 76
BoxI GACNNNNGTC 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 99
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 64, 99
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 60
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 2 cut(s) 69, 100
BslI CCNNNNNNNGG 2 cut(s) 64, 99
BsmAI GTCTC 1 cut(s) 160
BsnI GGCC 1 cut(s) 68
Bso31I GGTCTC 1 cut(s) 160
Bsp143I GATC 3 cut(s) 52, 85, 133
BspACI CCGC 1 cut(s) 58
BspANI GGCC 1 cut(s) 68
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 3 cut(s) 52, 85, 133
Bst4CI ACNGT 2 cut(s) 113, 171
BstEII GGTNACC 1 cut(s) 159
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 3 cut(s) 55, 88, 136
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 3 cut(s) 52, 85, 133
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstPAI GACNNNNGTC 1 cut(s) 95
BstPI GGTNACC 1 cut(s) 159
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 68
BtgZI GCGATG 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 97, 102
CpoI CGGWCCG 1 cut(s) 102
Csp6I GTAC 1 cut(s) 114
CspI CGGWCCG 1 cut(s) 102
CviAII CATG 1 cut(s) 79
CviJI RGCY 3 cut(s) 36, 68, 77
CviKI_1 RGCY 3 cut(s) 36, 68, 77
CviQI GTAC 1 cut(s) 114
DpnI GATC 3 cut(s) 54, 87, 135
DpnII GATC 3 cut(s) 52, 85, 133
EaeI YGGCCR 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 97, 102
Eco91I GGTNACC 1 cut(s) 159
EcoO65I GGTNACC 1 cut(s) 159
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 65, 80, 121
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 37, 58
Fsp4HI GCNGC 2 cut(s) 37, 58
GluI GCNGC 2 cut(s) 37, 58
HaeIII GGCC 1 cut(s) 68
HapII CCGG 2 cut(s) 69, 100
Hin1II CATG 1 cut(s) 82
HpaII CCGG 2 cut(s) 69, 100
HphI GGTGA 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 90, 106, 131
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 186
HpyCH4III ACNGT 2 cut(s) 113, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 3 cut(s) 52, 85, 133
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 2 cut(s) 82, 113
Lsp1109I GCAGC 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 159
MalI GATC 3 cut(s) 54, 87, 135
MboI GATC 3 cut(s) 52, 85, 133
MboII GAAGA 1 cut(s) 62
MflI RGATCY 1 cut(s) 133
MluCI AATT 1 cut(s) 153
MmeI TCCRAC 2 cut(s) 113, 129
MnlI CCTC 3 cut(s) 65, 88, 180
MspI CCGG 2 cut(s) 69, 100
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 3 cut(s) 52, 85, 133
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 38, 59
PshAI GACNNNNGTC 1 cut(s) 95
PspEI GGTNACC 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 97, 102
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
Rsr2I CGGWCCG 1 cut(s) 102
RsrII CGGWCCG 1 cut(s) 102
SatI GCNGC 2 cut(s) 37, 58
Sau3AI GATC 3 cut(s) 52, 85, 133
Sau96I GGNCC 2 cut(s) 97, 102
SetI ASST 2 cut(s) 99, 191
SinI GGWCC 2 cut(s) 97, 102
Sse9I AATT 1 cut(s) 153
SsiI CCGC 1 cut(s) 58
TaaI ACNGT 2 cut(s) 113, 171
TaqI TCGA 1 cut(s) 181
TaqII GACCGA 2 cut(s) 98, 107
TasI AATT 1 cut(s) 153
TauI GCSGC 1 cut(s) 60
TseFI GTSAC 1 cut(s) 159
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 159
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 97, 102
XapI RAATTY 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.