Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Forward (+)

10038989 .. 10042191

Gene Structure 3203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0124300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAAGGGTCGAGCAACGGAGGGATGCTGTACCACGAGGTACAGGAGTCGAAGCTGTGCGCCGTGCATTGCGTCAACACGGCGCTGCAGGGTCCCTTCTTCTCCGAATTCGATTTGGCCGCCCTCGCCTCCGATCTCGATCGCAAGGAGCGCCAGATGATGCAGCTCAACCTCCAAGCCGGAGCCAACGCCGCCGCCGGCGATTTCCTCTCCGAGGAGTCCCACAACGTCTCCCTCGACGGCGATTTCAGTATCCAGGTACTTCAAAAGGCTTTAGAGGTTTGGGATCTGCAGGTCATCCCCCTTGATTCTCCAGTTGCAGAGCCAGCTCAGATCGATCCTGAGCTGGAAAATGGGTTTATCTGTCATTTACATGATCATTGGTTCTGTATCAGGAAAGTGAATGGGGAGTGGTATAATTTTGACAGTCTGTATGCAGCCCCACTTCACCTTTCAAAGTTTTACCTCTCGGCCTATTTGGACACGCTAAAGGGCTCTGGTTGGAGCATTTTCCTGGTGAGAGGAAACTTCCCAAAAGAGTGTCCCATCTCATCCTCAGAAGCTTCCAACGGGTATGGGCAGTGGCTTTCACCTGAAGATGCCGACCGAATAACTAAATCCTGCAACTCCACAAATGCTCCACGCCAGACTCAGAGAACAAATCCTCGACAACCTTCAGACCAATTCCTATCTACCGAGGAAGCAGAGCTGCTATCAGAGATGGAAGACGAGGACATGAAGGCTGCAATAGCTGCCAGTCTTATGGATTCTTCCCCACCCGTGGTCAATGCCGGAGCTAGCAACGTGGTCAATGCCGGAGCTAGCAATGTGGCCAATGCCGGAGATAGCAACGTGGTCAATGCCAATGCCGGAGCTAGCAACGTGGCCAATGCCGGAGCTAGCAACGTGGCCAATGCCGGAGCTAGCAACGTGGCCAATGCCGGAGCTAGCAACGTGGTCAATGCTGGAGCTAGCAACGTGGCCATTGCTGGAGCCAGCAACCCGCAGAATGAAAGCTCAGACAGCCAAGAGAACAAGATCAGCCAAGAGAATAAAATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

354

Amino Acids

37.57

Weight (kDa)

4.43

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Josephin	PF02099	15 - 174	7.2e-54	Josephin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AciI	CCGC	4 cut(s)	120, 192, 195, 1004
AclWI	GGATC	2 cut(s)	294, 332
AcoI	YGGCCR	6 cut(s)	117, 831, 885, 909, 933, 981
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	2 cut(s)	615, 660
AfaI	GTAC	3 cut(s)	32, 42, 261
AfiI	CCNNNNNNNGG	2 cut(s)	214, 781
AgsI	TTSAA	2 cut(s)	266, 456
AjnI	CCWGG	2 cut(s)	255, 513
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	294, 332
AoxI	GGCC	7 cut(s)	117, 471, 831, 885, 909, 933, 981
ApeKI	GCWGC	6 cut(s)	85, 163, 437, 709, 743, 752
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	62, 85, 153
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	3 cut(s)	440, 529, 582
AsuNHI	GCTAGC	7 cut(s)	797, 821, 875, 899, 923, 947, 971
AvaII	GGWCC	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	32, 65
BalI	TGGCCA	5 cut(s)	833, 887, 911, 935, 983
BanII	GRGCYC	1 cut(s)	497
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	732
BbvI	GCAGC	6 cut(s)	72, 175, 449, 696, 730, 739
BccI	CCATC	2 cut(s)	554, 715
BceAI	ACGGC	3 cut(s)	47, 96, 256
BciT130I	CCWGG	2 cut(s)	257, 515
BciVI	GTATCC	1 cut(s)	263
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	7 cut(s)	798, 822, 876, 900, 924, 948, 972
BfmI	CTRYAG	2 cut(s)	86, 290
BfoI	RGCGCY	2 cut(s)	86, 154
BfuAI	ACCTGC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	9 cut(s)	86, 120, 164, 192, 195, 438, 710, 744, 753
BlsI	GCNGC	9 cut(s)	87, 121, 165, 193, 196, 439, 711, 745, 754
Bme1390I	CCNGG	2 cut(s)	257, 515
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	4 cut(s)	93, 94, 184, 994
BmrFI	CCNGG	2 cut(s)	257, 515
BmsI	GCATC	3 cut(s)	15, 150, 589
BmtI	GCTAGC	7 cut(s)	801, 825, 879, 903, 927, 951, 975
BpiI	GAAGAC	1 cut(s)	732
BpmI	CTGGAG	3 cut(s)	297, 987, 1011
Bpu10I	CCTNAGC	1 cut(s)	342
Bsa29I	ATCGAT	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	213, 696, 780
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 622, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 781
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	314, 756
Bse3DI	GCAATG	3 cut(s)	67, 832, 984
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	257, 515
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	3 cut(s)	213, 696, 780
BseGI	GGATG	3 cut(s)	30, 297, 551
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	214, 781
BseMI	GCAATG	3 cut(s)	67, 832, 984
BseMII	CTCAG	5 cut(s)	333, 344, 570, 665, 1032
BseNI	ACTGG	2 cut(s)	314, 756
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	6 cut(s)	72, 175, 449, 696, 730, 739
Bsh1285I	CGRYCG	2 cut(s)	142, 607
BshFI	GGCC	7 cut(s)	119, 473, 833, 887, 911, 935, 983
BshVI	ATCGAT	1 cut(s)	336
BsiEI	CGRYCG	2 cut(s)	142, 607
BsiSI	CCGG	9 cut(s)	180, 198, 792, 816, 840, 870, 894, 918, 942
BslFI	GGGAC	3 cut(s)	78, 205, 528
BslI	CCNNNNNNNGG	2 cut(s)	214, 781
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	3 cut(s)	78, 205, 528
BsnI	GGCC	7 cut(s)	119, 473, 833, 887, 911, 935, 983
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	7 cut(s)	133, 139, 286, 333, 337, 376, 1038
BspACI	CCGC	4 cut(s)	120, 192, 195, 1004
BspANI	GGCC	7 cut(s)	119, 473, 833, 887, 911, 935, 983
BspCNI	CTCAG	5 cut(s)	334, 343, 569, 664, 1031
BspDI	ATCGAT	1 cut(s)	336
BspLI	GGNNCC	4 cut(s)	93, 94, 184, 994
BspMAI	CTGCAG	2 cut(s)	90, 294
BspMI	ACCTGC	1 cut(s)	283
BspOI	GCTAGC	7 cut(s)	801, 825, 879, 903, 927, 951, 975
BspPI	GGATC	2 cut(s)	294, 332
BsrDI	GCAATG	3 cut(s)	67, 832, 984
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	314, 756
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	3 cut(s)	213, 696, 780
BssMI	GATC	7 cut(s)	133, 139, 286, 333, 337, 376, 1038
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	257, 515
Bst4CI	ACNGT	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstDEI	CTNAG	5 cut(s)	330, 342, 556, 651, 1018
BstDSI	CCRYGG	1 cut(s)	780
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	3 cut(s)	30, 297, 551
BstH2I	RGCGCY	2 cut(s)	86, 154
BstHHI	GCGC	3 cut(s)	62, 85, 153
BstKTI	GATC	7 cut(s)	136, 142, 289, 336, 340, 379, 1041
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	7 cut(s)	133, 139, 286, 333, 337, 376, 1038
BstMCI	CGRYCG	2 cut(s)	142, 607
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 150, 191, 326, 749, 752, 1023
BstNI	CCWGG	2 cut(s)	257, 515
BstSCI	CCNGG	2 cut(s)	255, 513
BstSFI	CTRYAG	2 cut(s)	86, 290
BstV1I	GCAGC	6 cut(s)	72, 175, 449, 696, 730, 739
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	7 cut(s)	119, 473, 833, 887, 911, 935, 983
BsuTUI	ATCGAT	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	780
BtsCI	GGATG	3 cut(s)	30, 297, 551
BtsI	GCAGTG	1 cut(s)	587
BtsIMutI	CAGTG	1 cut(s)	587
BveI	ACCTGC	1 cut(s)	283
CfoI	GCGC	3 cut(s)	62, 85, 153
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	92
ClaI	ATCGAT	1 cut(s)	336
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	3 cut(s)	31, 41, 260
CviAII	CATG	2 cut(s)	374, 736
CviQI	GTAC	3 cut(s)	31, 41, 260
DdeI	CTNAG	5 cut(s)	330, 342, 556, 651, 1018
DpnI	GATC	7 cut(s)	135, 141, 288, 335, 339, 378, 1040
DpnII	GATC	7 cut(s)	133, 139, 286, 333, 337, 376, 1038
EaeI	YGGCCR	6 cut(s)	117, 831, 885, 909, 933, 981
Eco24I	GRGCYC	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	2 cut(s)	615, 660
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	255, 513
EcoT38I	GRGCYC	1 cut(s)	497
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	2 cut(s)	377, 739
FaiI	YATR	6 cut(s)	375, 417, 435, 576, 737, 764
FaqI	GGGAC	3 cut(s)	78, 205, 528
FatI	CATG	2 cut(s)	373, 735
FauI	CCCGC	1 cut(s)	1011
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	9 cut(s)	86, 120, 164, 192, 195, 438, 710, 744, 753
FokI	GGATG	3 cut(s)	37, 284, 538
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	9 cut(s)	86, 120, 164, 192, 195, 438, 710, 744, 753
FspBI	CTAG	7 cut(s)	798, 822, 876, 900, 924, 948, 972
GlaI	GCGC	3 cut(s)	61, 84, 152
GluI	GCNGC	9 cut(s)	86, 120, 164, 192, 195, 438, 710, 744, 753
GsuI	CTGGAG	3 cut(s)	297, 987, 1011
HaeII	RGCGCY	2 cut(s)	86, 154
HaeIII	GGCC	7 cut(s)	119, 473, 833, 887, 911, 935, 983
HapII	CCGG	9 cut(s)	180, 198, 792, 816, 840, 870, 894, 918, 942
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	3 cut(s)	62, 85, 153
Hin1II	CATG	2 cut(s)	377, 739
Hin6I	GCGC	3 cut(s)	60, 83, 151
HinP1I	GCGC	3 cut(s)	60, 83, 151
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	5 cut(s)	47, 218, 308, 649, 767
HpaII	CCGG	9 cut(s)	180, 198, 792, 816, 840, 870, 894, 918, 942
HphI	GGTGA	3 cut(s)	440, 529, 582
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	9 cut(s)	106, 133, 214, 333, 559, 654, 679, 718, 1021
Hpy188III	TCNNGA	3 cut(s)	137, 341, 394
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	106, 684, 733
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	8 cut(s)	228, 804, 852, 882, 906, 930, 954, 978
HpyCH4V	TGCA	8 cut(s)	67, 88, 163, 292, 320, 437, 624, 746
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 150, 191, 326, 749, 752, 1023
HpyF3I	CTNAG	5 cut(s)	330, 342, 556, 651, 1018
HpySE526I	ACGT	8 cut(s)	228, 804, 852, 882, 906, 930, 954, 978
Hsp92II	CATG	2 cut(s)	377, 739
HspAI	GCGC	3 cut(s)	60, 83, 151
KflI	GGGWCCC	1 cut(s)	92
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	7 cut(s)	133, 139, 286, 333, 337, 376, 1038
Lsp1109I	GCAGC	6 cut(s)	72, 175, 449, 696, 730, 739
LweI	GCATC	3 cut(s)	15, 150, 589
MaeI	CTAG	7 cut(s)	798, 822, 876, 900, 924, 948, 972
MaeII	ACGT	8 cut(s)	228, 804, 852, 882, 906, 930, 954, 978
MalI	GATC	7 cut(s)	135, 141, 288, 335, 339, 378, 1040
MboI	GATC	7 cut(s)	133, 139, 286, 333, 337, 376, 1038
MboII	GAAGA	4 cut(s)	91, 608, 737, 762
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	497
MlsI	TGGCCA	5 cut(s)	833, 887, 911, 935, 983
MluCI	AATT	4 cut(s)	107, 418, 683, 1056
MluNI	TGGCCA	5 cut(s)	833, 887, 911, 935, 983
MlyI	GAGTC	3 cut(s)	56, 227, 643
MmeI	TCCRAC	2 cut(s)	482, 591
Mox20I	TGGCCA	5 cut(s)	833, 887, 911, 935, 983
MreI	CGCCGGCG	1 cut(s)	197
MroNI	GCCGGC	1 cut(s)	197
MscI	TGGCCA	5 cut(s)	833, 887, 911, 935, 983
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	5 cut(s)	833, 887, 911, 935, 983
MspI	CCGG	9 cut(s)	180, 198, 792, 816, 840, 870, 894, 918, 942
MspR9I	CCNGG	2 cut(s)	257, 515
MvaI	CCWGG	2 cut(s)	257, 515
MwoI	GCNNNNNNNGC	7 cut(s)	125, 150, 191, 326, 749, 752, 1023
NaeI	GCCGGC	1 cut(s)	199
NdeII	GATC	7 cut(s)	133, 139, 286, 333, 337, 376, 1038
NgoMIV	GCCGGC	1 cut(s)	197
NheI	GCTAGC	7 cut(s)	797, 821, 875, 899, 923, 947, 971
NlaIII	CATG	2 cut(s)	377, 739
NlaIV	GGNNCC	4 cut(s)	93, 94, 184, 994
NmeAIII	GCCGAG	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	308, 767
PkrI	GCNGC	9 cut(s)	87, 121, 165, 193, 196, 439, 711, 745, 754
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	3 cut(s)	55, 226, 643
PpsI	GAGTC	3 cut(s)	55, 226, 643
PpuMI	RGGWCCY	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	92
Psp6I	CCWGG	2 cut(s)	255, 513
PspGI	CCWGG	2 cut(s)	255, 513
PspN4I	GGNNCC	4 cut(s)	93, 94, 184, 994
PspPI	GGNCC	1 cut(s)	92
PspPPI	RGGWCCY	1 cut(s)	92
PstI	CTGCAG	2 cut(s)	90, 294
PsuI	RGATCY	1 cut(s)	286
PvuI	CGATCG	1 cut(s)	142
RsaI	GTAC	3 cut(s)	32, 42, 261
RsaNI	GTAC	3 cut(s)	31, 41, 260
RseI	CAYNNNNRTG	1 cut(s)	372
SatI	GCNGC	9 cut(s)	86, 120, 164, 192, 195, 438, 710, 744, 753
Sau3AI	GATC	7 cut(s)	133, 139, 286, 333, 337, 376, 1038
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	3 cut(s)	56, 227, 643
ScrFI	CCNGG	2 cut(s)	257, 515
SduI	GDGCHC	1 cut(s)	497
SfaNI	GCATC	3 cut(s)	15, 150, 589
SfcI	CTRYAG	2 cut(s)	86, 290
SgrAI	CRCCGGYG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	4 cut(s)	107, 418, 683, 1056
SsiI	CCGC	4 cut(s)	120, 192, 195, 1004
SspMI	CTAG	7 cut(s)	798, 822, 876, 900, 924, 948, 972
StyD4I	CCNGG	2 cut(s)	255, 513
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	8 cut(s)	231, 807, 855, 885, 909, 933, 957, 981
TaqI	TCGA	7 cut(s)	11, 50, 111, 138, 237, 336, 667
TaqII	GACCGA	1 cut(s)	621
TasI	AATT	4 cut(s)	107, 418, 683, 1056
TauI	GCSGC	3 cut(s)	122, 194, 197
TfiI	GAWTC	2 cut(s)	308, 767
TscAI	CASTG	1 cut(s)	587
TseI	GCWGC	6 cut(s)	85, 163, 437, 709, 743, 752
TspDTI	ATGAA	2 cut(s)	752, 1026
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	107
XspI	CTAG	7 cut(s)	798, 822, 876, 900, 924, 948, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.