Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Reverse (-)

15959385 .. 15959837

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACCGCTTCTCCGAAAAGCCGCCTACCAAGTCCCTCTCCCTCTCCCAATCGGTCCGCCCGATCGACAACGCCATGGATTTCGGCCCGCCCATTTCACCCTCTCCACCCCATCGCATCGGCCGCCCTCATTATCCACTCTTGTCCTCTTCTCCTTCATCACAATCTCTTCATCCTCCTCCTCATCATCTACAATGGCCACCATACCCGATTACTTCACGACAAACATCTCGAGCTCAAAGTCTCTTCATCGAGCCCTCACTCTGCGAGCCCGACCCGCCTGCTCCTCCACCCGCACACCGAGCACCATCACAAGCCCGAACCGCAGCTCGGACCTCCAACCCGGGACCTGTCCTCGTCGTTCAATCTCGCCACTTCGCCTTTTCCGGAGGCTGCGATGGCAACGAAGATCACCGCGATATGGTCGGAGGAGCCATGACGGATCCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.26

Weight (kDa)

7.94

Isoelectric Point (pI)

82.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	386
AciI	CCGC	9 cut(s)	7, 23, 58, 89, 124, 278, 294, 324, 415
AclWI	GGATC	2 cut(s)	437, 450
AcoI	YGGCCR	2 cut(s)	121, 197
AfiI	CCNNNNNNNGG	2 cut(s)	330, 421
AgsI	TTSAA	1 cut(s)	365
AluBI	AGCT	2 cut(s)	236, 329
AluI	AGCT	2 cut(s)	236, 329
Alw21I	GWGCWC	2 cut(s)	238, 307
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	2 cut(s)	437, 450
Ama87I	CYCGRG	2 cut(s)	231, 343
Aor13HI	TCCGGA	1 cut(s)	386
AoxI	GGCC	3 cut(s)	85, 121, 197
ApeKI	GCWGC	2 cut(s)	326, 393
AspS9I	GGNCC	5 cut(s)	4, 55, 86, 333, 347
AsuC2I	CCSGG	2 cut(s)	344, 345
AsuHPI	GGTGA	2 cut(s)	90, 404
AvaI	CYCGRG	2 cut(s)	231, 343
AvaII	GGWCC	4 cut(s)	4, 55, 333, 347
BalI	TGGCCA	1 cut(s)	199
BamHI	GGATCC	1 cut(s)	442
BanII	GRGCYC	3 cut(s)	238, 258, 273
Bbv12I	GWGCWC	2 cut(s)	238, 307
BbvI	GCAGC	2 cut(s)	338, 380
BccI	CCATC	3 cut(s)	120, 316, 392
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BcnI	CCSGG	2 cut(s)	344, 345
BcoDI	GTCTC	1 cut(s)	248
BisI	GCNGC	4 cut(s)	23, 124, 327, 394
BlsI	GCNGC	4 cut(s)	24, 125, 328, 395
Bme1390I	CCNGG	2 cut(s)	344, 345
Bme18I	GGWCC	4 cut(s)	4, 55, 333, 347
BmeT110I	CYCGRG	2 cut(s)	231, 343
BmgT120I	GGNCC	5 cut(s)	4, 55, 86, 333, 347
BmiI	GGNNCC	3 cut(s)	348, 433, 444
BmrFI	CCNGG	2 cut(s)	344, 345
BmsI	GCATC	1 cut(s)	126
BpuMI	CCSGG	2 cut(s)	344, 345
BsaJI	CCNNGG	2 cut(s)	75, 343
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 421
BseAI	TCCGGA	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	75, 343
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	330, 421
BseRI	GAGGAG	4 cut(s)	168, 171, 276, 444
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	338, 380
Bsh1236I	CGCG	1 cut(s)	417
Bsh1285I	CGRYCG	2 cut(s)	66, 124
BshFI	GGCC	3 cut(s)	87, 123, 199
BsiEI	CGRYCG	2 cut(s)	66, 124
BsiHKAI	GWGCWC	2 cut(s)	238, 307
BsiHKCI	CYCGRG	2 cut(s)	231, 343
BsiSI	CCGG	2 cut(s)	344, 387
BslFI	GGGAC	2 cut(s)	19, 360
BslI	CCNNNNNNNGG	2 cut(s)	330, 421
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	2 cut(s)	19, 360
BsnI	GGCC	3 cut(s)	87, 123, 199
BsoBI	CYCGRG	2 cut(s)	231, 343
Bsp1286I	GDGCHC	4 cut(s)	238, 258, 273, 307
Bsp13I	TCCGGA	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	63, 409, 442
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	9 cut(s)	7, 23, 58, 89, 124, 278, 294, 324, 415
BspANI	GGCC	3 cut(s)	87, 123, 199
BspEI	TCCGGA	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	3 cut(s)	348, 433, 444
BspPI	GGATC	2 cut(s)	437, 450
BssECI	CCNNGG	2 cut(s)	75, 343
BssMI	GATC	3 cut(s)	63, 409, 442
BssT1I	CCWWGG	1 cut(s)	75
Bst6I	CTCTTC	3 cut(s)	154, 174, 251
BstC8I	GCNNGC	3 cut(s)	89, 269, 282
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	417
BstKTI	GATC	3 cut(s)	66, 412, 445
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	63, 409, 442
BstMCI	CGRYCG	2 cut(s)	66, 124
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 277, 302, 323, 399
BstSCI	CCNGG	2 cut(s)	342, 343
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	338, 380
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BstZI	CGGCCG	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	87, 123, 199
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	2 cut(s)	98, 411
BtsCI	GGATG	1 cut(s)	172
Cac8I	GCNNGC	3 cut(s)	89, 269, 282
Cfr13I	GGNCC	5 cut(s)	4, 55, 86, 333, 347
Cfr9I	CCCGGG	1 cut(s)	343
CpoI	CGGWCCG	1 cut(s)	55
CspI	CGGWCCG	1 cut(s)	55
CviAII	CATG	2 cut(s)	76, 436
DpnI	GATC	3 cut(s)	65, 411, 444
DpnII	GATC	3 cut(s)	63, 409, 442
EaeI	YGGCCR	2 cut(s)	121, 197
EagI	CGGCCG	1 cut(s)	121
Eam1104I	CTCTTC	3 cut(s)	154, 174, 251
EarI	CTCTTC	3 cut(s)	154, 174, 251
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	236
EclXI	CGGCCG	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	3 cut(s)	238, 258, 273
Eco47I	GGWCC	4 cut(s)	4, 55, 333, 347
Eco52I	CGGCCG	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	236
Eco88I	CYCGRG	2 cut(s)	231, 343
EcoICRI	GAGCTC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	3 cut(s)	238, 258, 273
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	79, 439
FaiI	YATR	4 cut(s)	77, 205, 422, 437
FaqI	GGGAC	2 cut(s)	19, 360
FatI	CATG	2 cut(s)	75, 435
FauI	CCCGC	3 cut(s)	96, 285, 301
Fnu4HI	GCNGC	4 cut(s)	23, 124, 327, 394
FokI	GGATG	1 cut(s)	159
FriOI	GRGCYC	3 cut(s)	238, 258, 273
Fsp4HI	GCNGC	4 cut(s)	23, 124, 327, 394
GluI	GCNGC	4 cut(s)	23, 124, 327, 394
HaeIII	GGCC	3 cut(s)	87, 123, 199
HapII	CCGG	2 cut(s)	344, 387
Hin1II	CATG	2 cut(s)	79, 439
HpaII	CCGG	2 cut(s)	344, 387
HphI	GGTGA	2 cut(s)	90, 404
Hpy188I	TCNGA	3 cut(s)	16, 333, 428
Hpy188III	TCNNGA	3 cut(s)	219, 231, 387
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 277, 302, 323, 399
Hsp92II	CATG	2 cut(s)	79, 439
Kpn2I	TCCGGA	1 cut(s)	386
Kzo9I	GATC	3 cut(s)	63, 409, 442
LmnI	GCTCC	2 cut(s)	289, 431
LpnPI	CCDG	4 cut(s)	294, 357, 363, 400
Lsp1109I	GCAGC	2 cut(s)	338, 380
LweI	GCATC	1 cut(s)	126
MalI	GATC	3 cut(s)	65, 411, 444
MboI	GATC	3 cut(s)	63, 409, 442
MboII	GAAGA	4 cut(s)	141, 161, 238, 419
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	4 cut(s)	238, 258, 273, 307
MlsI	TGGCCA	1 cut(s)	199
MluCI	AATT	1 cut(s)	448
MluNI	TGGCCA	1 cut(s)	199
MmeI	TCCRAC	2 cut(s)	363, 406
Mox20I	TGGCCA	1 cut(s)	199
MroI	TCCGGA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	199
Msp20I	TGGCCA	1 cut(s)	199
MspI	CCGG	2 cut(s)	344, 387
MspR9I	CCNGG	2 cut(s)	344, 345
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	123, 277, 302, 323, 399
NciI	CCSGG	2 cut(s)	344, 345
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	3 cut(s)	63, 409, 442
NlaIII	CATG	2 cut(s)	79, 439
NlaIV	GGNNCC	3 cut(s)	348, 433, 444
PaeR7I	CTCGAG	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PkrI	GCNGC	4 cut(s)	24, 125, 328, 395
Ple19I	CGATCG	1 cut(s)	66
PpuMI	RGGWCCY	1 cut(s)	347
Psp124BI	GAGCTC	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	347
PspN4I	GGNNCC	3 cut(s)	348, 433, 444
PspPI	GGNCC	5 cut(s)	4, 55, 86, 333, 347
PspPPI	RGGWCCY	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	442
PvuI	CGATCG	1 cut(s)	66
Rsr2I	CGGWCCG	1 cut(s)	55
RsrII	CGGWCCG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	238
SatI	GCNGC	4 cut(s)	23, 124, 327, 394
Sau3AI	GATC	3 cut(s)	63, 409, 442
Sau96I	GGNCC	5 cut(s)	4, 55, 86, 333, 347
ScrFI	CCNGG	2 cut(s)	344, 345
SduI	GDGCHC	4 cut(s)	238, 258, 273, 307
SetI	ASST	4 cut(s)	238, 331, 338, 352
SfaNI	GCATC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	4 cut(s)	4, 55, 333, 347
SlaI	CTCGAG	1 cut(s)	231
SmaI	CCCGGG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	1 cut(s)	448
SsiI	CCGC	9 cut(s)	7, 23, 58, 89, 124, 278, 294, 324, 415
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	342, 343
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	3 cut(s)	66, 232, 252
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	448
TauI	GCSGC	2 cut(s)	25, 126
TseI	GCWGC	2 cut(s)	326, 393
TspDTI	ATGAA	3 cut(s)	147, 161, 238
TspMI	CCCGGG	1 cut(s)	343
VpaK11BI	GGWCC	4 cut(s)	4, 55, 333, 347
XhoI	CTCGAG	1 cut(s)	231
XmaI	CCCGGG	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.