Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Forward (+)

7837566 .. 7837991

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG097700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGACCGCTTCTTCGACGAGCTCGCAGCCAAGTCCCTCTCCCTCTCCAATCTGGTCCGCCTTATCGCCGCCGCCAGCCCAGCCCATTTCACCCTCTCTGCCCCATTGCATCAGCTGCCCTCATTCTCCACTCTTGTCCTCTTCTTCCTCTTTTCCTTCATCACAATCTCTTCATCTACAATGGCCACCATACCTGATTGCTTCAAGACTAACATCTCGAGCTTAGAGTCTCTTTATCAGGTCGCACTGCTGTCGAGCCCGACCTGCTTGCTCCTCTACCTGCACATCGAGCACTGTCACAAGCCTGAACTGCAGGTCGGACCTCCGACCCAGACCTGTCCTCGTCGTTCAATCTCGCCACTTCGCCTTTTCCGGAGGGCTGCGACGGCGACGAAGATCGTTGCGATATGGCCGGAGGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.66

Weight (kDa)

8.45

Isoelectric Point (pI)

62.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	272, 288, 304
AccIII	TCCGGA	1 cut(s)	372
AciI	CCGC	4 cut(s)	7, 58, 69, 72
AcoI	YGGCCR	2 cut(s)	183, 410
AgsI	TTSAA	2 cut(s)	205, 351
AluBI	AGCT	3 cut(s)	22, 115, 222
AluI	AGCT	3 cut(s)	22, 115, 222
Alw21I	GWGCWC	2 cut(s)	24, 294
Alw26I	GTCTC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	217
Aor13HI	TCCGGA	1 cut(s)	372
AoxI	GGCC	2 cut(s)	183, 410
ApeKI	GCWGC	3 cut(s)	26, 115, 380
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspS9I	GGNCC	3 cut(s)	4, 55, 320
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	217
AvaII	GGWCC	3 cut(s)	4, 55, 320
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	24, 260
Bbv12I	GWGCWC	2 cut(s)	24, 294
BbvI	GCAGC	3 cut(s)	38, 102, 367
BceAI	ACGGC	1 cut(s)	402
BcgI	CGANNNNNNTGC	4 cut(s)	234, 250, 268, 284
BcoDI	GTCTC	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	311
BfuAI	ACCTGC	3 cut(s)	272, 288, 304
BisI	GCNGC	5 cut(s)	27, 69, 72, 116, 381
BlsI	GCNGC	5 cut(s)	28, 70, 73, 117, 382
Bme18I	GGWCC	3 cut(s)	4, 55, 320
BmeT110I	CYCGRG	1 cut(s)	217
BmgT120I	GGNCC	3 cut(s)	4, 55, 320
BmiI	GGNNCC	1 cut(s)	420
BmsI	GCATC	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	104
BseAI	TCCGGA	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	38, 102, 367
BseYI	CCCAGC	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	185, 412
BsiHKAI	GWGCWC	2 cut(s)	24, 294
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	373, 413
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	185, 412
BsoBI	CYCGRG	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	24, 260, 294
Bsp13I	TCCGGA	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	396
BspACI	CCGC	4 cut(s)	7, 58, 69, 72
BspANI	GGCC	2 cut(s)	185, 412
BspEI	TCCGGA	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	315
BspMI	ACCTGC	3 cut(s)	272, 288, 304
BsrDI	GCAATG	1 cut(s)	104
BssMI	GATC	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	146, 175
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	24, 76, 269
BstDEI	CTNAG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 115, 264, 289, 310, 386, 418
BstSFI	CTRYAG	1 cut(s)	311
BstV1I	GCAGC	3 cut(s)	38, 102, 367
BsuRI	GGCC	2 cut(s)	185, 412
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	245, 292
BveI	ACCTGC	3 cut(s)	272, 288, 304
Cac8I	GCNNGC	3 cut(s)	24, 76, 269
Cfr13I	GGNCC	3 cut(s)	4, 55, 320
CviAII	CATG	1 cut(s)	423
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
EaeI	YGGCCR	2 cut(s)	183, 410
Eam1104I	CTCTTC	2 cut(s)	146, 175
EarI	CTCTTC	2 cut(s)	146, 175
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	24, 260
Eco47I	GGWCC	3 cut(s)	4, 55, 320
Eco53kI	GAGCTC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	22
EcoT38I	GRGCYC	2 cut(s)	24, 260
FaeI	CATG	1 cut(s)	426
FaiI	YATR	3 cut(s)	191, 409, 424
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	422
Fnu4HI	GCNGC	5 cut(s)	27, 69, 72, 116, 381
FriOI	GRGCYC	2 cut(s)	24, 260
Fsp4HI	GCNGC	5 cut(s)	27, 69, 72, 116, 381
GluI	GCNGC	5 cut(s)	27, 69, 72, 116, 381
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	185, 412
HapII	CCGG	2 cut(s)	373, 413
Hin1II	CATG	1 cut(s)	426
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	2 cut(s)	373, 413
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	320, 327
Hpy188III	TCNNGA	3 cut(s)	205, 217, 373
Hpy99I	CGWCG	4 cut(s)	20, 348, 388, 394
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	109, 283, 313
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 115, 264, 289, 310, 386, 418
HpyF3I	CTNAG	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	426
Kpn2I	TCCGGA	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	276, 418
Lsp1109I	GCAGC	3 cut(s)	38, 102, 367
LweI	GCATC	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	5 cut(s)	4, 133, 136, 162, 406
MhlI	GDGCHC	3 cut(s)	24, 260, 294
MlsI	TGGCCA	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	2 cut(s)	298, 350
Mox20I	TGGCCA	1 cut(s)	185
MroI	TCCGGA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	2 cut(s)	373, 413
MwoI	GCNNNNNNNGC	7 cut(s)	80, 115, 264, 289, 310, 386, 418
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	217
PkrI	GCNGC	5 cut(s)	28, 70, 73, 117, 382
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	3 cut(s)	4, 55, 320
PstI	CTGCAG	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	24
SatI	GCNGC	5 cut(s)	27, 69, 72, 116, 381
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	3 cut(s)	4, 55, 320
SchI	GAGTC	1 cut(s)	236
SduI	GDGCHC	3 cut(s)	24, 260, 294
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	311
Sfr274I	CTCGAG	1 cut(s)	217
SinI	GGWCC	3 cut(s)	4, 55, 320
SlaI	CTCGAG	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
SsiI	CCGC	4 cut(s)	7, 58, 69, 72
SstI	GAGCTC	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	4 cut(s)	15, 218, 254, 288
TauI	GCSGC	2 cut(s)	71, 74
TscAI	CASTG	2 cut(s)	252, 299
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	3 cut(s)	26, 115, 380
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	148, 162
TspRI	CASTG	2 cut(s)	252, 299
VpaK11BI	GGWCC	3 cut(s)	4, 55, 320
XhoI	CTCGAG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.