RLG00000014944

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010581
Physical Location & Seq
Reverse (-)
59824641 .. 59829710
5070 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014944

Sequence Viewer

Length: 693 bp
ATGGCATCCAAGCGGATCTGGGAGGAGCTCAAGGATCTCCAGAAAGATCCTCCTACCTCTTGTAGGGCTGATAGAGAGGAGTCTCCGATGACGCGCTGCGGCAGAGGAGGGGAAAAAAGCCATCTAGAAACGGCGGGTCTGGGTGGACCAATTGGGGCAGGAAATAACGAATGGGGATTTGGAGATGAGGGCTTTGCTGGGTTGATGGGTAGAGATGGGAGAAAAACAGGAAGAAAGCCTAGTCGTGTATGCACTCGTCCGATAGCCCTCAGCCTTGGAGTCGTCATTGACCTCATCGGCGCGTTGTGGGTGCAGCCGGACGGCTGGAATTTGAGAGACGTGGTTGAGGAGATCGCGGTTGATGGCGAGCGGTGGTCTGGTACTCCCTGGCGGGGTCGGCGGATGAAGCTGCTATCGCGGGGTTGGCCGGAAGTCGCTGGTTTGGGACCAATGTCAGGATTGTGCAAAGTCATTAGCGGAGGGACGATGGATGACCTACTTTGGTTTGGATCTATGGGTGATCCCGAATCTGATTTGGGTATAATGATGGCCAGAAGCTTAGGTTGCGAGGCTGGTGGAGCGCTGATGACGGCGGCGACCCAAAATAGGTGGAGGTGCGTCGGAGGTGCCAGGATATCTGCATGGCTAAAACAGTATTGGGTCGGGCTTGTCATGTTGGCTCTAATCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

24.92

Weight (kDa)

8.24

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 626
AccBSI CCGCTC 1 cut(s) 370
AccII CGCG 4 cut(s) 94, 302, 356, 418
AclWI GGATC 5 cut(s) 23, 41, 42, 515, 517
AcoI YGGCCR 2 cut(s) 425, 549
AcsI RAATTY 1 cut(s) 328
AfaI GTAC 1 cut(s) 382
AfeI AGCGCT 1 cut(s) 582
AfiI CCNNNNNNNGG 4 cut(s) 63, 392, 455, 606
AjiI CACGTC 1 cut(s) 340
AjnI CCWGG 2 cut(s) 386, 629
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 3 cut(s) 28, 409, 558
AluI AGCT 3 cut(s) 28, 409, 558
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 87, 330
AlwI GGATC 5 cut(s) 23, 41, 42, 515, 517
Aor51HI AGCGCT 1 cut(s) 582
AoxI GGCC 2 cut(s) 425, 549
ApeKI GCWGC 3 cut(s) 96, 313, 409
ApoI RAATTY 1 cut(s) 328
AspLEI GCGC 3 cut(s) 96, 302, 583
AspS9I GGNCC 2 cut(s) 146, 446
AsuHPI GGTGA 1 cut(s) 530
AvaII GGWCC 2 cut(s) 146, 446
BalI TGGCCA 1 cut(s) 551
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 3 cut(s) 83, 325, 396
BccI CCATC 6 cut(s) 129, 199, 209, 356, 481, 541
BceAI ACGGC 3 cut(s) 147, 337, 606
BciT130I CCWGG 2 cut(s) 388, 631
BcoDI GTCTC 2 cut(s) 87, 330
BfaI CTAG 3 cut(s) 125, 240, 691
BfoI RGCGCY 1 cut(s) 584
BisI GCNGC 5 cut(s) 97, 100, 314, 410, 594
BlsI GCNGC 5 cut(s) 98, 101, 315, 411, 595
Bme1390I CCNGG 2 cut(s) 388, 631
Bme18I GGWCC 2 cut(s) 146, 446
BmgBI CACGTC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 146, 446
BmiI GGNNCC 2 cut(s) 447, 628
BmrFI CCNGG 2 cut(s) 388, 631
BmsI GCATC 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 451
BpmI CTGGAG 1 cut(s) 23
Bpu10I CCTNAGC 2 cut(s) 269, 559
BpuEI CTTGAG 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 274, 386
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 392, 455, 606
BseBI CCWGG 2 cut(s) 388, 631
BseDI CCNNGG 2 cut(s) 274, 386
BseGI GGATG 3 cut(s) 5, 408, 496
BseLI CCNNNNNNNGG 4 cut(s) 63, 392, 455, 606
BseMII CTCAG 1 cut(s) 283
BseRI GAGGAG 4 cut(s) 38, 92, 120, 362
BseXI GCAGC 3 cut(s) 83, 325, 396
BseYI CCCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 4 cut(s) 94, 302, 356, 418
BshFI GGCC 2 cut(s) 427, 551
BshNI GGYRCC 1 cut(s) 626
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 2 cut(s) 317, 428
BslFI GGGAC 2 cut(s) 459, 496
BslI CCNNNNNNNGG 4 cut(s) 63, 392, 455, 606
BsmAI GTCTC 2 cut(s) 87, 330
BsmBI CGTCTC 1 cut(s) 330
BsmFI GGGAC 2 cut(s) 459, 496
BsnI GGCC 2 cut(s) 427, 551
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 6 cut(s) 15, 34, 46, 351, 509, 520
BspANI GGCC 2 cut(s) 427, 551
BspCNI CTCAG 1 cut(s) 282
BspFNI CGCG 4 cut(s) 94, 302, 356, 418
BspLI GGNNCC 2 cut(s) 447, 628
BspPI GGATC 5 cut(s) 23, 41, 42, 515, 517
BspT107I GGYRCC 1 cut(s) 626
BsrBI CCGCTC 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 274, 386
BssMI GATC 6 cut(s) 15, 34, 46, 351, 509, 520
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 388, 631
Bst4CI ACNGT 1 cut(s) 654
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 269, 559
BstENI CCTNNNNNAGG 1 cut(s) 61
BstF5I GGATG 3 cut(s) 5, 408, 496
BstFNI CGCG 4 cut(s) 94, 302, 356, 418
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 3 cut(s) 96, 302, 583
BstKTI GATC 6 cut(s) 18, 37, 49, 354, 512, 523
BstMAI GTCTC 2 cut(s) 87, 330
BstMBI GATC 6 cut(s) 15, 34, 46, 351, 509, 520
BstMWI GCNNNNNNNGC 6 cut(s) 397, 406, 415, 424, 564, 578
BstNI CCWGG 2 cut(s) 388, 631
BstPAI GACNNNNGTC 1 cut(s) 451
BstSCI CCNGG 2 cut(s) 386, 629
BstUI CGCG 4 cut(s) 94, 302, 356, 418
BstV1I GCAGC 3 cut(s) 83, 325, 396
BstX2I RGATCY 4 cut(s) 15, 34, 46, 509
BstYI RGATCY 4 cut(s) 15, 34, 46, 509
BsuRI GGCC 2 cut(s) 427, 551
BtrI CACGTC 1 cut(s) 340
BtsCI GGATG 3 cut(s) 5, 408, 496
Cac8I GCNNGC 1 cut(s) 368
CfoI GCGC 3 cut(s) 96, 302, 583
Cfr13I GGNCC 2 cut(s) 146, 446
CseI GACGC 2 cut(s) 100, 607
Csp6I GTAC 1 cut(s) 381
CspCI CAANNNNNGTGG 2 cut(s) 590, 625
CviAII CATG 2 cut(s) 642, 673
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 2 cut(s) 269, 559
DpnI GATC 6 cut(s) 17, 36, 48, 353, 511, 522
DpnII GATC 6 cut(s) 15, 34, 46, 351, 509, 520
EaeI YGGCCR 2 cut(s) 425, 549
EciI GGCGGA 1 cut(s) 415
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 30
Eco32I GATATC 1 cut(s) 636
Eco47I GGWCC 2 cut(s) 146, 446
Eco47III AGCGCT 1 cut(s) 582
Eco53kI GAGCTC 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 386, 629
EcoRV GATATC 1 cut(s) 636
EcoT14I CCWWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 2 cut(s) 645, 676
FaiI YATR 5 cut(s) 250, 515, 542, 643, 674
FaqI GGGAC 2 cut(s) 459, 496
FatI CATG 2 cut(s) 641, 672
FauI CCCGC 3 cut(s) 127, 384, 411
Fnu4HI GCNGC 5 cut(s) 97, 100, 314, 410, 594
FokI GGATG 2 cut(s) 415, 503
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 5 cut(s) 97, 100, 314, 410, 594
FspBI CTAG 3 cut(s) 125, 240, 691
GlaI GCGC 3 cut(s) 95, 301, 582
GluI GCNGC 5 cut(s) 97, 100, 314, 410, 594
GsaI CCCAGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 23
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 2 cut(s) 427, 551
HapII CCGG 2 cut(s) 317, 428
HgaI GACGC 2 cut(s) 100, 607
HhaI GCGC 3 cut(s) 96, 302, 583
Hin1II CATG 2 cut(s) 645, 676
Hin6I GCGC 3 cut(s) 94, 300, 581
HinP1I GCGC 3 cut(s) 94, 300, 581
HindIII AAGCTT 1 cut(s) 556
HinfI GANTC 3 cut(s) 80, 279, 527
HpaII CCGG 2 cut(s) 317, 428
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 4 cut(s) 87, 261, 532, 623
Hpy188III TCNNGA 4 cut(s) 40, 125, 456, 524
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 1 cut(s) 623
HpyCH4III ACNGT 1 cut(s) 654
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 4 cut(s) 252, 313, 465, 641
HpyF10VI GCNNNNNNNGC 6 cut(s) 397, 406, 415, 424, 564, 578
HpyF3I CTNAG 2 cut(s) 269, 559
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 2 cut(s) 645, 676
HspAI GCGC 3 cut(s) 94, 300, 581
Kzo9I GATC 6 cut(s) 15, 34, 46, 351, 509, 520
LmnI GCTCC 2 cut(s) 25, 578
Lsp1109I GCAGC 3 cut(s) 83, 325, 396
LweI GCATC 1 cut(s) 14
MaeI CTAG 3 cut(s) 125, 240, 691
MaeII ACGT 1 cut(s) 339
MalI GATC 6 cut(s) 17, 36, 48, 353, 511, 522
MbiI CCGCTC 1 cut(s) 370
MboI GATC 6 cut(s) 15, 34, 46, 351, 509, 520
MboII GAAGA 1 cut(s) 243
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 4 cut(s) 15, 34, 46, 509
MhlI GDGCHC 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 2 cut(s) 150, 328
MluNI TGGCCA 1 cut(s) 551
MlyI GAGTC 2 cut(s) 89, 288
MmeI TCCRAC 1 cut(s) 601
Mox20I TGGCCA 1 cut(s) 551
MscI TGGCCA 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 551
MspI CCGG 2 cut(s) 317, 428
MspR9I CCNGG 2 cut(s) 388, 631
MunI CAATTG 1 cut(s) 150
MvaI CCWGG 2 cut(s) 388, 631
MvnI CGCG 4 cut(s) 94, 302, 356, 418
MwoI GCNNNNNNNGC 6 cut(s) 397, 406, 415, 424, 564, 578
NdeII GATC 6 cut(s) 15, 34, 46, 351, 509, 520
NlaIII CATG 2 cut(s) 645, 676
NlaIV GGNNCC 2 cut(s) 447, 628
PfeI GAWTC 1 cut(s) 527
PkrI GCNGC 5 cut(s) 98, 101, 315, 411, 595
PleI GAGTC 2 cut(s) 88, 287
PpsI GAGTC 2 cut(s) 88, 287
PshAI GACNNNNGTC 1 cut(s) 451
Psp124BI GAGCTC 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 386, 629
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 2 cut(s) 386, 629
PspN4I GGNNCC 2 cut(s) 447, 628
PspPI GGNCC 2 cut(s) 146, 446
PsuI RGATCY 4 cut(s) 15, 34, 46, 509
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SacI GAGCTC 1 cut(s) 30
SatI GCNGC 5 cut(s) 97, 100, 314, 410, 594
Sau3AI GATC 6 cut(s) 15, 34, 46, 351, 509, 520
Sau96I GGNCC 2 cut(s) 146, 446
SchI GAGTC 2 cut(s) 89, 288
ScrFI CCNGG 2 cut(s) 388, 631
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 2 cut(s) 146, 446
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 2 cut(s) 150, 328
SspMI CTAG 3 cut(s) 125, 240, 691
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 2 cut(s) 386, 629
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 654
TaiI ACGT 1 cut(s) 342
TasI AATT 2 cut(s) 150, 328
TauI GCSGC 2 cut(s) 102, 596
TfiI GAWTC 1 cut(s) 527
TseI GCWGC 3 cut(s) 96, 313, 409
TspDTI ATGAA 1 cut(s) 419
VpaK11BI GGWCC 2 cut(s) 146, 446
XagI CCTNNNNNAGG 1 cut(s) 61
XapI RAATTY 1 cut(s) 328
XbaI TCTAGA 1 cut(s) 124
XspI CTAG 3 cut(s) 125, 240, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.