Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Forward (+)

31530296 .. 31530898

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTCTGCGATGCTTCAGCTTCTTCACTAATGGCTTATAGAGAGGAACCAGCAGCACCATCTTCTCCAGCTTCGTTGTTAATGAATCTGGGGCAAACCCTAACCCACATTCAGAGTGGAGTGATCAAGAAGAGGAAAGCTGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTACAAAGGTGTCAGGCAGAGGAGCGGCAAGTGGGTTTGCGAAATGAGGCAACCGGGTCTCAAGAAGTCTCGGGTTTGGCTCGGTACCTTCACTTGTCCTGAAATGGCTGCTAGGGCTTATGATGTAGCAGCTCTGGCTCTGAAAGGTGAATCTGCTCAGTTGAACTTTCCGGATGAAGCTAAGGCGCCTCCTTCTTCGACTTCGAGTATGTCATTGCCGGAGTTGACGAGTATGGTGAACTTGGAGAAGGTAGAAGTAGGGTCGAGTAAAGGGTATGTGGATGAGGAGGAGTTGTTTAACATGCCAGAGATACTTGACAGTATGGCTGAGGGTTTGATTCTCACTCCCCTAGCCCTGCAGAAAGGTTTTAACTGGGATGATTATGATCTGGAGAATGCCGTAGAGTTTTCTCTGTGGAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

200

Amino Acids

22.11

Weight (kDa)

5.82

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	58 - 108	9.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	2 cut(s)	260, 361
AccBSI	CCGCTC	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	362
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	2 cut(s)	179, 262
AgsI	TTSAA	2 cut(s)	157, 340
AluBI	AGCT	5 cut(s)	20, 71, 140, 308, 356
AluI	AGCT	5 cut(s)	20, 71, 140, 308, 356
Alw26I	GTCTC	3 cut(s)	155, 239, 249
Ama87I	CYCGRG	1 cut(s)	246
Aor13HI	TCCGGA	1 cut(s)	346
ApeKI	GCWGC	3 cut(s)	53, 284, 305
Asp700I	GAANNNNTTC	1 cut(s)	152
Asp718I	GGTACC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	364
AsuC2I	CCSGG	2 cut(s)	173, 231
AsuHPI	GGTGA	2 cut(s)	335, 424
AvaI	CYCGRG	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	260, 361
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	65, 271, 317
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	560
BclI	TGATCA	1 cut(s)	123
BcnI	CCSGG	2 cut(s)	173, 231
BcoDI	GTCTC	3 cut(s)	155, 239, 249
BfaI	CTAG	2 cut(s)	288, 527
BfmI	CTRYAG	1 cut(s)	533
BfoI	RGCGCY	1 cut(s)	365
BisI	GCNGC	4 cut(s)	54, 202, 285, 306
BlsI	GCNGC	4 cut(s)	55, 203, 286, 307
Bme1390I	CCNGG	2 cut(s)	173, 231
BmeT110I	CYCGRG	1 cut(s)	246
BmiI	GGNNCC	3 cut(s)	48, 262, 363
BmrFI	CCNGG	2 cut(s)	173, 231
BmrI	ACTGGG	1 cut(s)	559
BmuI	ACTGGG	1 cut(s)	559
BpmI	CTGGAG	2 cut(s)	51, 587
Bpu10I	CCTNAGC	2 cut(s)	357, 504
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	173, 231
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bse1I	ACTGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	389
Bse8I	GATNNNNATC	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	346
BseGI	GGATG	3 cut(s)	355, 463, 559
BseJI	GATNNNNATC	1 cut(s)	561
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	347, 495
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	3 cut(s)	211, 476, 479
BseXI	GCAGC	3 cut(s)	65, 271, 317
BseYI	CCCAGC	1 cut(s)	140
BshNI	GGYRCC	2 cut(s)	260, 361
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	173, 230, 347, 395
BsmAI	GTCTC	3 cut(s)	155, 239, 249
BsmI	GAATGC	1 cut(s)	577
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	246
Bsp13I	TCCGGA	1 cut(s)	346
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	123, 562
BspACI	CCGC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	346, 496
BspEI	TCCGGA	1 cut(s)	346
BspLI	GGNNCC	3 cut(s)	48, 262, 363
BspMAI	CTGCAG	1 cut(s)	537
BspT107I	GGYRCC	2 cut(s)	260, 361
BspTNI	GGTCTC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	554
BssMI	GATC	2 cut(s)	123, 562
BssNI	GRCGYC	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	333, 357, 504
BstF5I	GGATG	3 cut(s)	355, 463, 559
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	2 cut(s)	126, 565
BstMAI	GTCTC	3 cut(s)	155, 239, 249
BstMBI	GATC	2 cut(s)	123, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 311
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	2 cut(s)	171, 229
BstSFI	CTRYAG	1 cut(s)	533
BstV1I	GCAGC	3 cut(s)	65, 271, 317
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	355, 463, 559
CfoI	GCGC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	178, 261
CviAII	CATG	1 cut(s)	478
CviQI	GTAC	2 cut(s)	178, 261
DdeI	CTNAG	3 cut(s)	333, 357, 504
DinI	GGCGCC	1 cut(s)	363
DpnI	GATC	2 cut(s)	125, 564
DpnII	GATC	2 cut(s)	123, 562
DraIII	CACNNNGTG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	363
EheI	GGCGCC	1 cut(s)	363
FaeI	CATG	1 cut(s)	481
FaiI	YATR	8 cut(s)	39, 297, 386, 410, 453, 479, 500, 561
FatI	CATG	1 cut(s)	477
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	4 cut(s)	54, 202, 285, 306
FokI	GGATG	3 cut(s)	362, 470, 566
Fsp4HI	GCNGC	4 cut(s)	54, 202, 285, 306
FspBI	CTAG	2 cut(s)	288, 527
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	4 cut(s)	54, 202, 285, 306
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	2 cut(s)	51, 587
HaeII	RGCGCY	1 cut(s)	365
HapII	CCGG	4 cut(s)	173, 230, 347, 395
HhaI	GCGC	1 cut(s)	364
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	4 cut(s)	85, 163, 326, 514
HpaII	CCGG	4 cut(s)	173, 230, 347, 395
HphI	GGTGA	2 cut(s)	335, 424
Hpy166II	GTNNAC	3 cut(s)	178, 402, 415
Hpy188I	TCNGA	2 cut(s)	114, 318
Hpy188III	TCNNGA	5 cut(s)	127, 238, 275, 347, 566
Hpy8I	GTNNAC	3 cut(s)	178, 402, 415
HpyAV	CCTTC	3 cut(s)	274, 378, 418
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4V	TGCA	1 cut(s)	535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 311
HpyF3I	CTNAG	3 cut(s)	333, 357, 504
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	1 cut(s)	362
KasI	GGCGCC	1 cut(s)	361
Kpn2I	TCCGGA	1 cut(s)	346
KpnI	GGTACC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	123, 562
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	3 cut(s)	65, 271, 317
MaeI	CTAG	2 cut(s)	288, 527
MalI	GATC	2 cut(s)	125, 564
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	2 cut(s)	123, 562
MboII	GAAGA	5 cut(s)	15, 54, 142, 160, 363
Mly113I	GGCGCC	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	9 cut(s)	37, 126, 138, 189, 216, 375, 454, 457, 499
MroI	TCCGGA	1 cut(s)	346
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	4 cut(s)	80, 474, 546, 601
MspI	CCGG	4 cut(s)	173, 230, 347, 395
MspR9I	CCNGG	2 cut(s)	173, 231
Mva1269I	GAATGC	1 cut(s)	577
MwoI	GCNNNNNNNGC	2 cut(s)	290, 311
NarI	GGCGCC	1 cut(s)	362
NciI	CCSGG	2 cut(s)	173, 231
NdeII	GATC	2 cut(s)	123, 562
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	3 cut(s)	48, 262, 363
NspI	RCATGY	1 cut(s)	481
PctI	GAATGC	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	3 cut(s)	85, 326, 514
PkrI	GCNGC	4 cut(s)	55, 203, 286, 307
PleI	GAGTC	1 cut(s)	157
PluTI	GGCGCC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	3 cut(s)	48, 262, 363
PstI	CTGCAG	1 cut(s)	537
RsaI	GTAC	2 cut(s)	179, 262
RsaNI	GTAC	2 cut(s)	178, 261
SaqAI	TTAA	4 cut(s)	80, 474, 546, 601
SatI	GCNGC	4 cut(s)	54, 202, 285, 306
Sau3AI	GATC	2 cut(s)	123, 562
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	173, 231
SfcI	CTRYAG	1 cut(s)	533
SfoI	GGCGCC	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SsiI	CCGC	1 cut(s)	201
SspDI	GGCGCC	1 cut(s)	361
SspMI	CTAG	2 cut(s)	288, 527
StyD4I	CCNGG	2 cut(s)	171, 229
TaaI	ACNGT	1 cut(s)	497
TaqI	TCGA	3 cut(s)	374, 380, 440
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	85, 326, 514
Tru1I	TTAA	4 cut(s)	80, 474, 546, 601
Tru9I	TTAA	4 cut(s)	80, 474, 546, 601
TseI	GCWGC	3 cut(s)	53, 284, 305
TspDTI	ATGAA	2 cut(s)	98, 366
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	2 cut(s)	288, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.