Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Forward (+)

14574934 .. 14575392

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG172300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGACGCCGACCCCAGGGATTACTTCTCAGACGAGCTCGCTGCCAACTCCCTCTCCCTCTGCAATCTGGTCAGCCCGATCGCCGTCGCCGCCATGGATTCCGGCCCGACACATTTCACCCTCTCCGCCCCATCGCATCAGTCGCCCTCATTCTCCACTCTTGTCCTCTTCTCCTTCATCACAATCTCTTCATCCTCCTCCTCATAATCTACAAATGGCCACCATACTTGATTGCTTCACGAGGAACATCTCGAGCTCAGAGTCTCTTCATCAGGCTGCACTGTTGCTGAGCCCGACCTGCCTGCGCCTCCGCCTGCACACAGAGCACTGTCAAGAGCCCGAACTGCAGCTTGGACCTCTGACCCAGACCTATCCTCGTTGTTCAATCTCGCCACTTTGCATTTTCAGGAAGACTACAACGACGAGGAAGATCGTTGTGATATGGCCGGAGGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.77

Weight (kDa)

9.34

Isoelectric Point (pI)

95.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	305
AciI	CCGC	3 cut(s)	89, 125, 310
AcoI	YGGCCR	2 cut(s)	216, 443
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	384
AjnI	CCWGG	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	3 cut(s)	36, 255, 349
AluI	AGCT	3 cut(s)	36, 255, 349
Alw21I	GWGCWC	3 cut(s)	38, 257, 327
Alw26I	GTCTC	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	3 cut(s)	102, 216, 443
ApeKI	GCWGC	3 cut(s)	40, 275, 346
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	103, 353
AsuHPI	GGTGA	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	218
BanII	GRGCYC	4 cut(s)	38, 257, 293, 339
BauI	CACGAG	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	3 cut(s)	38, 257, 327
BbvI	GCAGC	3 cut(s)	27, 262, 358
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 283, 317
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	4 cut(s)	41, 89, 276, 347
BlpI	GCTNAGC	1 cut(s)	287
BlsI	GCNGC	4 cut(s)	42, 90, 277, 348
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	103, 353
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	416
Bpu1102I	GCTNAGC	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	13, 14, 92
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	3 cut(s)	13, 14, 92
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	41, 270, 278
BseRI	GAGGAG	2 cut(s)	186, 189
BseXI	GCAGC	3 cut(s)	27, 262, 358
BsgI	GTGCAG	2 cut(s)	261, 299
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	104, 218, 445
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	3 cut(s)	38, 257, 327
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	101, 446
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	104, 218, 445
BsoBI	CYCGRG	1 cut(s)	250
Bsp1286I	GDGCHC	5 cut(s)	38, 257, 293, 327, 339
Bsp143I	GATC	2 cut(s)	77, 429
Bsp1720I	GCTNAGC	1 cut(s)	287
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	3 cut(s)	89, 125, 310
BspANI	GGCC	3 cut(s)	104, 218, 445
BspCNI	CTCAG	3 cut(s)	40, 269, 279
BspLI	GGNNCC	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	305
BssECI	CCNNGG	3 cut(s)	13, 14, 92
BssMI	GATC	2 cut(s)	77, 429
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	282, 329
Bst6I	CTCTTC	3 cut(s)	172, 192, 270
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	38, 302, 314
BstDEI	CTNAG	3 cut(s)	27, 256, 287
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	2 cut(s)	80, 432
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	77, 429
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 141, 297, 322, 343, 451
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	27, 262, 358
BstV2I	GAAGAC	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	104, 218, 445
BtgI	CCRYGG	1 cut(s)	92
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	278, 325
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	38, 302, 314
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	103, 353
CseI	GACGC	1 cut(s)	13
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	2 cut(s)	93, 456
DdeI	CTNAG	3 cut(s)	27, 256, 287
DpnI	GATC	2 cut(s)	79, 431
DpnII	GATC	2 cut(s)	77, 429
EaeI	YGGCCR	2 cut(s)	216, 443
Eam1104I	CTCTTC	3 cut(s)	172, 192, 270
EarI	CTCTTC	3 cut(s)	172, 192, 270
EciI	GGCGGA	2 cut(s)	114, 299
Ecl136II	GAGCTC	2 cut(s)	36, 255
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	4 cut(s)	38, 257, 293, 339
Eco47I	GGWCC	1 cut(s)	353
Eco53kI	GAGCTC	2 cut(s)	36, 255
Eco88I	CYCGRG	1 cut(s)	250
EcoICRI	GAGCTC	2 cut(s)	36, 255
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	4 cut(s)	38, 257, 293, 339
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	2 cut(s)	96, 459
FaiI	YATR	5 cut(s)	94, 204, 224, 442, 457
FatI	CATG	2 cut(s)	92, 455
Fnu4HI	GCNGC	4 cut(s)	41, 89, 276, 347
FokI	GGATG	1 cut(s)	177
FriOI	GRGCYC	4 cut(s)	38, 257, 293, 339
Fsp4HI	GCNGC	4 cut(s)	41, 89, 276, 347
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	4 cut(s)	41, 89, 276, 347
HaeIII	GGCC	3 cut(s)	104, 218, 445
HapII	CCGG	2 cut(s)	101, 446
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	96, 459
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	97, 260
HpaII	CCGG	2 cut(s)	101, 446
HphI	GGTGA	1 cut(s)	108
Hpy188I	TCNGA	3 cut(s)	30, 259, 360
Hpy188III	TCNNGA	4 cut(s)	238, 250, 332, 406
Hpy99I	CGWCG	2 cut(s)	88, 424
HpyAV	CCTTC	1 cut(s)	183
HpyCH4III	ACNGT	2 cut(s)	282, 329
HpyCH4V	TGCA	5 cut(s)	62, 278, 316, 346, 399
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 141, 297, 322, 343, 451
HpyF3I	CTNAG	3 cut(s)	27, 256, 287
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	96, 459
HspAI	GCGC	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	77, 429
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	9 cut(s)	27, 52, 114, 257, 310, 314, 326, 377, 391
Lsp1109I	GCAGC	3 cut(s)	27, 262, 358
LweI	GCATC	1 cut(s)	144
MalI	GATC	2 cut(s)	79, 431
MboI	GATC	2 cut(s)	77, 429
MboII	GAAGA	5 cut(s)	159, 179, 257, 421, 439
MhlI	GDGCHC	5 cut(s)	38, 257, 293, 327, 339
MlsI	TGGCCA	1 cut(s)	218
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	269
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	2 cut(s)	101, 446
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	6 cut(s)	88, 141, 297, 322, 343, 451
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	2 cut(s)	77, 429
NlaIII	CATG	2 cut(s)	96, 459
NlaIV	GGNNCC	1 cut(s)	453
PaeR7I	CTCGAG	1 cut(s)	250
PasI	CCCWGGG	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	4 cut(s)	42, 90, 277, 348
Ple19I	CGATCG	1 cut(s)	80
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp124BI	GAGCTC	2 cut(s)	38, 257
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	2 cut(s)	103, 353
PstI	CTGCAG	1 cut(s)	348
PvuI	CGATCG	1 cut(s)	80
SacI	GAGCTC	2 cut(s)	38, 257
SatI	GCNGC	4 cut(s)	41, 89, 276, 347
Sau3AI	GATC	2 cut(s)	77, 429
Sau96I	GGNCC	2 cut(s)	103, 353
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	5 cut(s)	38, 257, 293, 327, 339
SetI	ASST	6 cut(s)	38, 257, 299, 351, 358, 371
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	344
Sfr274I	CTCGAG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
SsiI	CCGC	3 cut(s)	89, 125, 310
SstI	GAGCTC	2 cut(s)	38, 257
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	282, 329
TaqI	TCGA	1 cut(s)	251
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	97
TscAI	CASTG	2 cut(s)	285, 332
TseI	GCWGC	3 cut(s)	40, 275, 346
TspDTI	ATGAA	3 cut(s)	165, 179, 257
TspRI	CASTG	2 cut(s)	285, 332
VpaK11BI	GGWCC	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.