Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Forward (+)

31647775 .. 31651368

Gene Structure 3594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCTTATAGAGAGGAACCAGCAGCATCATCTTCTCCAGCTTCGTTGTTAGTGAATCTGGGGCAAACCCTAACCCGCATTCAGAGTGGAGTGATCAAGAAGAGAAAAGCTGGAAGGAAGAAGTTCACGGAGACTCGCCACCCGGTGTACAGAGGCGTCAGGCAGAGGAGTGGCAAGTGGGTTTGCGAAATGAGGCAACCGGATCACAAGAAGTCTCGGGTTTGGCTCGGTACCTTCACTTGTCCTGAAATGGCTGCTAGGGCTTATGATGTAGCAGCTCTGGCTCTGAAAGGTGAATCTGCGCAGTTGAACTTTCCGGATGAAGCGAAGGCGTCTCCTCCTTCGACTTCGAGTATGTCATTGCTGGAGTTGACAAGTATGGCGAACTTGGAGAAGGTAGAAGTAGGGTCGAGTAAAGGGTATGTGGATGAGGAGGAGTTGTTTAACATGCCGGAGTTACTTGACAGTATGGCTGAGGGTTTGATTCTCACTCCCCCAGCCCTGCAAAAAGGTTTTAACTGGGATGATTATGATTTGGAGAAGGCCAGTGGATCCGTTCTGGATCGCTGGGATTTGAGAGAAGTGGCTGAGGAGATCTCGGCTGATGGCAAGTGGTGGTTTGGTACTCTTTGGCGGGGTCGGAGGATAAAGCTGCTGTCGCGGGGCTGGTCGGAAGTTGTTGGTTTGGGAGTAAGGTCGGGATCGTGCGAAGTCAATAGTGGAGGGACGATGGATGACTTGCTCTGGGTTGGATCTATGGGTGATCCCAGATCTGATTTGGGCAGAATGATGGCTAGAAGCCTAGGTTGCGTGGCTGGTGGAGTGCTGATGACTGCGGTGACCCGAAATAGGTGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

287

Amino Acids

31.68

Weight (kDa)

8.84

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	48 - 98	5.5e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
Acc65I	GGTACC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	230
AccII	CGCG	1 cut(s)	661
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	4 cut(s)	76, 634, 661, 836
AclWI	GGATC	7 cut(s)	210, 546, 559, 570, 709, 758, 760
AcyI	GRCGYC	2 cut(s)	156, 332
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	3 cut(s)	149, 232, 625
AfiI	CCNNNNNNNGG	1 cut(s)	849
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	4 cut(s)	41, 110, 278, 652
AluI	AGCT	4 cut(s)	41, 110, 278, 652
Alw26I	GTCTC	3 cut(s)	125, 219, 339
AlwI	GGATC	7 cut(s)	210, 546, 559, 570, 709, 758, 760
Ama87I	CYCGRG	1 cut(s)	216
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	4 cut(s)	23, 254, 275, 652
Asp700I	GAANNNNTTC	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	230
AspA2I	CCTAGG	1 cut(s)	802
AspLEI	GCGC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	3 cut(s)	305, 773, 850
AvaI	CYCGRG	1 cut(s)	216
AvrII	CCTAGG	1 cut(s)	802
BamHI	GGATCC	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	230
BbvCI	CCTCAGC	2 cut(s)	474, 588
BbvI	GCAGC	4 cut(s)	35, 241, 287, 639
BccI	CCATC	3 cut(s)	599, 724, 784
BclI	TGATCA	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	3 cut(s)	125, 219, 339
BfaI	CTAG	3 cut(s)	258, 795, 803
BglII	AGATCT	2 cut(s)	594, 770
BisI	GCNGC	4 cut(s)	24, 255, 276, 653
BlnI	CCTAGG	1 cut(s)	802
BlsI	GCNGC	4 cut(s)	25, 256, 277, 654
Bme1390I	CCNGG	1 cut(s)	143
BmeT110I	CYCGRG	1 cut(s)	216
BmiI	GGNNCC	3 cut(s)	18, 232, 553
BmrFI	CCNGG	1 cut(s)	143
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	529
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpmI	CTGGAG	2 cut(s)	21, 386
Bpu10I	CCTNAGC	2 cut(s)	474, 588
BpuMI	CCSGG	1 cut(s)	143
BsaHI	GRCGYC	2 cut(s)	156, 332
BsaJI	CCNNGG	1 cut(s)	802
BsaWI	WCCGGW	2 cut(s)	199, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	849
Bse1I	ACTGG	2 cut(s)	524, 546
Bse3DI	GCAATG	1 cut(s)	359
BseAI	TCCGGA	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	802
BseGI	GGATG	4 cut(s)	325, 433, 529, 739
BseLI	CCNNNNNNNGG	1 cut(s)	849
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	465, 579
BseNI	ACTGG	2 cut(s)	524, 546
BseRI	GAGGAG	5 cut(s)	181, 327, 446, 449, 605
BseXI	GCAGC	4 cut(s)	35, 241, 287, 639
BseYI	CCCAGC	2 cut(s)	496, 567
Bsh1236I	CGCG	1 cut(s)	661
BshFI	GGCC	1 cut(s)	545
BshNI	GGYRCC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	4 cut(s)	143, 200, 317, 452
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	1 cut(s)	849
BsmAI	GTCTC	3 cut(s)	125, 219, 339
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	739
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	216
Bsp13I	TCCGGA	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	9 cut(s)	93, 202, 551, 562, 594, 701, 752, 763, 770
BspACI	CCGC	4 cut(s)	76, 634, 661, 836
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	2 cut(s)	466, 580
BspEI	TCCGGA	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	661
BspLI	GGNNCC	3 cut(s)	18, 232, 553
BspPI	GGATC	7 cut(s)	210, 546, 559, 570, 709, 758, 760
BspT107I	GGYRCC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	524, 546
BssECI	CCNNGG	1 cut(s)	802
BssMI	GATC	9 cut(s)	93, 202, 551, 562, 594, 701, 752, 763, 770
BssNI	GRCGYC	2 cut(s)	156, 332
BssT1I	CCWWGG	1 cut(s)	802
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	2 cut(s)	156, 332
BstAUI	TGTACA	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	474, 588
BstEII	GGTNACC	1 cut(s)	838
BstF5I	GGATG	4 cut(s)	325, 433, 529, 739
BstFNI	CGCG	1 cut(s)	661
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	9 cut(s)	96, 205, 554, 565, 597, 704, 755, 766, 773
BstMAI	GTCTC	3 cut(s)	125, 219, 339
BstMBI	GATC	9 cut(s)	93, 202, 551, 562, 594, 701, 752, 763, 770
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 281, 658, 807
BstNSI	RCATGY	1 cut(s)	451
BstPI	GGTNACC	1 cut(s)	838
BstSCI	CCNGG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	661
BstV1I	GCAGC	4 cut(s)	35, 241, 287, 639
BstX2I	RGATCY	4 cut(s)	551, 594, 752, 770
BstYI	RGATCY	4 cut(s)	551, 594, 752, 770
BsuRI	GGCC	1 cut(s)	545
BtsCI	GGATG	4 cut(s)	325, 433, 529, 739
BtsIMutI	CAGTG	1 cut(s)	553
CfoI	GCGC	1 cut(s)	304
CseI	GACGC	2 cut(s)	145, 321
Csp6I	GTAC	3 cut(s)	148, 231, 624
CviAII	CATG	1 cut(s)	448
CviQI	GTAC	3 cut(s)	148, 231, 624
DdeI	CTNAG	2 cut(s)	474, 588
DpnI	GATC	9 cut(s)	95, 204, 553, 564, 596, 703, 754, 765, 772
DpnII	GATC	9 cut(s)	93, 202, 551, 562, 594, 701, 752, 763, 770
DraIII	CACNNNGTG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	802
Eco88I	CYCGRG	1 cut(s)	216
Eco91I	GGTNACC	1 cut(s)	838
EcoO65I	GGTNACC	1 cut(s)	838
EcoT14I	CCWWGG	1 cut(s)	802
ErhI	CCWWGG	1 cut(s)	802
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	1 cut(s)	451
FaiI	YATR	9 cut(s)	9, 267, 356, 380, 423, 449, 470, 531, 758
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	1 cut(s)	447
FauI	CCCGC	3 cut(s)	83, 627, 654
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	24, 255, 276, 653
FokI	GGATG	4 cut(s)	332, 440, 536, 746
Fsp4HI	GCNGC	4 cut(s)	24, 255, 276, 653
FspBI	CTAG	3 cut(s)	258, 795, 803
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	4 cut(s)	24, 255, 276, 653
GsaI	CCCAGC	2 cut(s)	500, 571
GsuI	CTGGAG	2 cut(s)	21, 386
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	4 cut(s)	143, 200, 317, 452
HgaI	GACGC	2 cut(s)	145, 321
HhaI	GCGC	1 cut(s)	304
Hin1I	GRCGYC	2 cut(s)	156, 332
Hin1II	CATG	1 cut(s)	451
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	4 cut(s)	55, 133, 296, 484
HpaII	CCGG	4 cut(s)	143, 200, 317, 452
HphI	GGTGA	3 cut(s)	305, 773, 850
Hpy166II	GTNNAC	3 cut(s)	126, 148, 372
Hpy188I	TCNGA	5 cut(s)	84, 288, 642, 673, 775
Hpy188III	TCNNGA	5 cut(s)	97, 245, 317, 560, 699
Hpy8I	GTNNAC	3 cut(s)	126, 148, 372
HpyAV	CCTTC	6 cut(s)	108, 244, 322, 351, 388, 535
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	1 cut(s)	505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 281, 658, 807
HpyF3I	CTNAG	2 cut(s)	474, 588
Hsp92I	GRCGYC	2 cut(s)	156, 332
Hsp92II	CATG	1 cut(s)	451
HspAI	GCGC	1 cut(s)	302
Kpn2I	TCCGGA	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	9 cut(s)	93, 202, 551, 562, 594, 701, 752, 763, 770
Lsp1109I	GCAGC	4 cut(s)	35, 241, 287, 639
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	3 cut(s)	258, 795, 803
MaeIII	GTNAC	2 cut(s)	456, 838
MalI	GATC	9 cut(s)	95, 204, 553, 564, 596, 703, 754, 765, 772
MboI	GATC	9 cut(s)	93, 202, 551, 562, 594, 701, 752, 763, 770
MboII	GAAGA	3 cut(s)	24, 112, 130
MflI	RGATCY	4 cut(s)	551, 594, 752, 770
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	3 cut(s)	620, 651, 730
MroI	TCCGGA	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	2 cut(s)	444, 516
MspI	CCGG	4 cut(s)	143, 200, 317, 452
MspR9I	CCNGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	78
MvnI	CGCG	1 cut(s)	661
MwoI	GCNNNNNNNGC	4 cut(s)	260, 281, 658, 807
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	9 cut(s)	93, 202, 551, 562, 594, 701, 752, 763, 770
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	3 cut(s)	18, 232, 553
NmeAIII	GCCGAG	1 cut(s)	578
NmuCI	GTSAC	1 cut(s)	838
NsbI	TGCGCA	1 cut(s)	303
NspI	RCATGY	1 cut(s)	451
PctI	GAATGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	3 cut(s)	55, 296, 484
PkrI	GCNGC	4 cut(s)	25, 256, 277, 654
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspEI	GGTNACC	1 cut(s)	838
PspFI	CCCAGC	2 cut(s)	496, 567
PspN4I	GGNNCC	3 cut(s)	18, 232, 553
PsuI	RGATCY	4 cut(s)	551, 594, 752, 770
RsaI	GTAC	3 cut(s)	149, 232, 625
RsaNI	GTAC	3 cut(s)	148, 231, 624
SaqAI	TTAA	2 cut(s)	444, 516
SatI	GCNGC	4 cut(s)	24, 255, 276, 653
Sau3AI	GATC	9 cut(s)	93, 202, 551, 562, 594, 701, 752, 763, 770
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	143
SfaNI	GCATC	1 cut(s)	35
SsiI	CCGC	4 cut(s)	76, 634, 661, 836
SspMI	CTAG	3 cut(s)	258, 795, 803
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	802
TaaI	ACNGT	1 cut(s)	467
TaqI	TCGA	3 cut(s)	344, 350, 410
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	3 cut(s)	55, 296, 484
Tru1I	TTAA	2 cut(s)	444, 516
Tru9I	TTAA	2 cut(s)	444, 516
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	4 cut(s)	23, 254, 275, 652
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	2 cut(s)	143, 544
TspRI	CASTG	1 cut(s)	553
XceI	RCATGY	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XmaJI	CCTAGG	1 cut(s)	802
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	3 cut(s)	258, 795, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.