Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Forward (+)

15181737 .. 15183285

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTTATAGAGAGGAACCAGCAGCACCATCTTCTCCAGCTTCGTTGTTAATGAATCTGGGGCAAACCCTAACCCACATTCAGAGTGGAGTGATCAAGAAGAGGAAAGCTGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTACAAAGGCGTCAGGCAGAGGAACGGCAAGTGGGTTTGCGAAATGAGGCAACCGGGTCTCAAGAAGTCTCGTGTTTGGCTCGGTACCTTCACTTGTCCTGAAATGGCTGCTAGGGCTTATGATGTAGCAGCTCTGGCTCTGAAAGGTGAATCTGCTCAGTTGAACTTTCCGGATGAAGCTAAGGCGTCTCCTTCTTGGACTTCGAGTATGTCATTGCCGGAGTTGACGAGTATGGTGAACTTGGAGAAGGTAGAAGTAGGGTCGAGTAAAGGGTATGTGGATGAGGAGGAGTTGTTTAACATGCCAGAGATACTTGACAGTATGGCTGAGGGTTTGATTCTAACTCCCCCAGCCCTGAAGAAAGGTTTTAACTGGGATGATTATGATCTGGAGAATGCCGTAGAGTTTTCTCTGTGGAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

190

Amino Acids

21.23

Weight (kDa)

6.76

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	48 - 98	7.8e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	524
AcyI	GRCGYC	2 cut(s)	156, 332
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	2 cut(s)	149, 232
AgsI	TTSAA	2 cut(s)	127, 310
AluBI	AGCT	4 cut(s)	41, 110, 278, 326
AluI	AGCT	4 cut(s)	41, 110, 278, 326
Alw26I	GTCTC	4 cut(s)	125, 209, 219, 339
Aor13HI	TCCGGA	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	23, 254, 275
Asp700I	GAANNNNTTC	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	230
AsuC2I	CCSGG	2 cut(s)	143, 201
AsuHPI	GGTGA	2 cut(s)	305, 394
BanI	GGYRCC	1 cut(s)	230
BauI	CACGAG	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	3 cut(s)	35, 241, 287
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	2 cut(s)	187, 530
BclI	TGATCA	1 cut(s)	93
BcnI	CCSGG	2 cut(s)	143, 201
BcoDI	GTCTC	4 cut(s)	125, 209, 219, 339
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	3 cut(s)	24, 255, 276
BlsI	GCNGC	3 cut(s)	25, 256, 277
Bme1390I	CCNGG	2 cut(s)	143, 201
BmiI	GGNNCC	2 cut(s)	18, 232
BmrFI	CCNGG	2 cut(s)	143, 201
BmrI	ACTGGG	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	529
BpmI	CTGGAG	2 cut(s)	21, 557
Bpu10I	CCTNAGC	2 cut(s)	327, 474
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	143, 201
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	2 cut(s)	156, 332
BsaI	GGTCTC	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bse1I	ACTGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	531
BseAI	TCCGGA	1 cut(s)	316
BseGI	GGATG	3 cut(s)	325, 433, 529
BseJI	GATNNNNATC	1 cut(s)	531
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	317, 465
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	2 cut(s)	446, 449
BseXI	GCAGC	3 cut(s)	35, 241, 287
BseYI	CCCAGC	2 cut(s)	110, 496
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	4 cut(s)	143, 200, 317, 365
BsmAI	GTCTC	4 cut(s)	125, 209, 219, 339
BsmBI	CGTCTC	1 cut(s)	339
BsmI	GAATGC	1 cut(s)	547
Bso31I	GGTCTC	1 cut(s)	209
Bsp13I	TCCGGA	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	93, 532
BspCNI	CTCAG	2 cut(s)	316, 466
BspEI	TCCGGA	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	18, 232
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	524
BssMI	GATC	2 cut(s)	93, 532
BssNI	GRCGYC	2 cut(s)	156, 332
BssSI	CACGAG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	2 cut(s)	156, 332
BstAUI	TGTACA	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	303, 327, 474
BstF5I	GGATG	3 cut(s)	325, 433, 529
BstKTI	GATC	2 cut(s)	96, 535
BstMAI	GTCTC	4 cut(s)	125, 209, 219, 339
BstMBI	GATC	2 cut(s)	93, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 281
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	141, 199
BstV1I	GCAGC	3 cut(s)	35, 241, 287
BtsCI	GGATG	3 cut(s)	325, 433, 529
CseI	GACGC	2 cut(s)	145, 321
Csp6I	GTAC	2 cut(s)	148, 231
CviAII	CATG	1 cut(s)	448
CviQI	GTAC	2 cut(s)	148, 231
DdeI	CTNAG	3 cut(s)	303, 327, 474
DpnI	GATC	2 cut(s)	95, 534
DpnII	GATC	2 cut(s)	93, 532
DraIII	CACNNNGTG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	524
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	1 cut(s)	451
FaiI	YATR	8 cut(s)	9, 267, 356, 380, 423, 449, 470, 531
FatI	CATG	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	24, 255, 276
FokI	GGATG	3 cut(s)	332, 440, 536
Fsp4HI	GCNGC	3 cut(s)	24, 255, 276
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	3 cut(s)	24, 255, 276
GsaI	CCCAGC	2 cut(s)	114, 500
GsuI	CTGGAG	2 cut(s)	21, 557
HapII	CCGG	4 cut(s)	143, 200, 317, 365
HgaI	GACGC	2 cut(s)	145, 321
Hin1I	GRCGYC	2 cut(s)	156, 332
Hin1II	CATG	1 cut(s)	451
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	4 cut(s)	55, 133, 296, 484
HpaII	CCGG	4 cut(s)	143, 200, 317, 365
HphI	GGTGA	2 cut(s)	305, 394
Hpy166II	GTNNAC	3 cut(s)	148, 372, 385
Hpy188I	TCNGA	2 cut(s)	84, 288
Hpy188III	TCNNGA	5 cut(s)	97, 208, 245, 317, 536
Hpy8I	GTNNAC	3 cut(s)	148, 372, 385
HpyAV	CCTTC	3 cut(s)	244, 348, 388
HpyCH4III	ACNGT	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 281
HpyF3I	CTNAG	3 cut(s)	303, 327, 474
Hsp92I	GRCGYC	2 cut(s)	156, 332
Hsp92II	CATG	1 cut(s)	451
Kpn2I	TCCGGA	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	93, 532
Lsp1109I	GCAGC	3 cut(s)	35, 241, 287
MaeI	CTAG	1 cut(s)	258
MalI	GATC	2 cut(s)	95, 534
MboI	GATC	2 cut(s)	93, 532
MboII	GAAGA	4 cut(s)	24, 112, 130, 517
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	8 cut(s)	7, 96, 108, 159, 186, 424, 427, 469
MroI	TCCGGA	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	4 cut(s)	50, 444, 516, 571
MspI	CCGG	4 cut(s)	143, 200, 317, 365
MspR9I	CCNGG	2 cut(s)	143, 201
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	2 cut(s)	260, 281
NciI	CCSGG	2 cut(s)	143, 201
NdeII	GATC	2 cut(s)	93, 532
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	2 cut(s)	18, 232
NspI	RCATGY	1 cut(s)	451
PctI	GAATGC	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	3 cut(s)	55, 296, 484
PkrI	GCNGC	3 cut(s)	25, 256, 277
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspFI	CCCAGC	2 cut(s)	110, 496
PspN4I	GGNNCC	2 cut(s)	18, 232
RsaI	GTAC	2 cut(s)	149, 232
RsaNI	GTAC	2 cut(s)	148, 231
SaqAI	TTAA	4 cut(s)	50, 444, 516, 571
SatI	GCNGC	3 cut(s)	24, 255, 276
Sau3AI	GATC	2 cut(s)	93, 532
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	2 cut(s)	143, 201
SetI	ASST	8 cut(s)	43, 112, 236, 280, 295, 328, 399, 514
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	141, 199
TaaI	ACNGT	1 cut(s)	467
TaqI	TCGA	2 cut(s)	350, 410
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	3 cut(s)	55, 296, 484
Tru1I	TTAA	4 cut(s)	50, 444, 516, 571
Tru9I	TTAA	4 cut(s)	50, 444, 516, 571
TseI	GCWGC	3 cut(s)	23, 254, 275
TspDTI	ATGAA	2 cut(s)	68, 336
XceI	RCATGY	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.