Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004769.1

Orthogroup ID

OG0010581

Physical Location & Seq

Genomic Coordinates Forward (+)

49864 .. 50629

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004769.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ctgattgcttcacgacaaacatctcgagctcgcagtctcttcatcgggccgcactgctgccgagcccgacctgcctactcctccacttgcacacctagcaccgtcacgagcccgaactatagctcggacctccgacccaaacttgtcctcgtgttcaatctcaccacttcgccttttccggagggctgcgactacgacgaagatcgctgcgatatggccggaggagccatgaccgatccaaatttaggtcaggtccggctatggtactttatactcatttggagatctaaaacgaagaacaaaaatttggtcactgagacctgtgttctgctcaacggcggcaagaagaagctctatgatttggcaaattgggtttctggaaaattgggtcttttgggggatgcacgtaaggtgtttgatagaatgcctgagaggaatttggtttcgtgggctactataatttctgggtatgcaatgcaacgcttggctggagatgcgttggagcttctcgggttgatgcgtagaggtgaggagagtgagggagagaatgagtttattttgactagtgttgtgagtgccttagctgtacgttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

198

Amino Acids

21.96

Weight (kDa)

8.94

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010581)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18090
malus_domestica	MD14G1017200.v1.1
prunus_persica	Prupe.7G115900_v2.0.a1
pyrus_communis	pycom14g01500
rosa_chinensis	RchiOBHm_Chr3g0472361
rosa_laevigata	RLG00000004865 RLG00000014944 RLG00000024085 RLG00000029058
rosa_multiflora	Rmu_sc0000627.1_g000006 Rmu_sc0000798.1_g000019 Rmu_sc0004769.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100500 Rroxscaffold_3G00231020 Rroxscaffold_6G00408990
rosa_rugosa	Rorug03G0124300
rosa_samantha	Rh2DG097700 Rh3BG202500 Rh3DG172700 Rh7CG172300
rosa_wichuraiana	Rw3G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	2 cut(s)	50, 339
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	3 cut(s)	241, 304, 436
AfaI	GTAC	2 cut(s)	266, 588
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	157
AhlI	ACTAGT	1 cut(s)	563
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	5 cut(s)	29, 123, 352, 505, 584
AluI	AGCT	5 cut(s)	29, 123, 352, 505, 584
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	2 cut(s)	41, 311
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	2 cut(s)	24, 509
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	2 cut(s)	47, 216
ApeKI	GCWGC	3 cut(s)	57, 186, 207
ApoI	RAATTY	3 cut(s)	241, 304, 436
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspS9I	GGNCC	3 cut(s)	47, 127, 253
AsuHPI	GGTGA	2 cut(s)	154, 539
AvaI	CYCGRG	2 cut(s)	24, 509
AvaII	GGWCC	2 cut(s)	127, 253
BanII	GRGCYC	3 cut(s)	31, 67, 113
BauI	CACGAG	2 cut(s)	106, 149
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	3 cut(s)	44, 173, 194
BceAI	ACGGC	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	41, 311
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	2 cut(s)	96, 564
BfmI	CTRYAG	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	5 cut(s)	50, 58, 187, 208, 340
BlsI	GCNGC	5 cut(s)	51, 59, 188, 209, 341
Bme18I	GGWCC	2 cut(s)	127, 253
BmeT110I	CYCGRG	2 cut(s)	24, 509
BmgT120I	GGNCC	3 cut(s)	47, 127, 253
BmiI	GGNNCC	1 cut(s)	226
BmsI	GCATC	3 cut(s)	391, 484, 507
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	580
BsaAI	YACGTR	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	178
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	306, 420
BseRI	GAGGAG	3 cut(s)	70, 237, 545
BseXI	GCAGC	3 cut(s)	44, 173, 194
BshFI	GGCC	2 cut(s)	49, 218
BsiHKAI	GWGCWC	1 cut(s)	31
BsiHKCI	CYCGRG	2 cut(s)	24, 509
BsiSI	CCGG	3 cut(s)	179, 219, 256
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	41, 311
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	49, 218
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	2 cut(s)	24, 509
Bsp1286I	GDGCHC	3 cut(s)	31, 67, 113
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	202, 235, 284
BspACI	CCGC	2 cut(s)	50, 339
BspANI	GGCC	2 cut(s)	49, 218
BspCNI	CTCAG	2 cut(s)	307, 421
BspEI	TCCGGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	480
BssMI	GATC	3 cut(s)	202, 235, 284
BssSI	CACGAG	2 cut(s)	106, 149
Bst2BI	CACGAG	2 cut(s)	106, 149
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	315, 429, 580
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	3 cut(s)	205, 238, 287
BstMAI	GTCTC	2 cut(s)	41, 311
BstMBI	GATC	3 cut(s)	202, 235, 284
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 96, 224, 494
BstSFI	CTRYAG	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	44, 173, 194
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	49, 218
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 312
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	47, 127, 253
Csp6I	GTAC	2 cut(s)	265, 587
CviAII	CATG	1 cut(s)	229
CviQI	GTAC	2 cut(s)	265, 587
DdeI	CTNAG	3 cut(s)	315, 429, 580
DpnI	GATC	3 cut(s)	204, 237, 286
DpnII	GATC	3 cut(s)	202, 235, 284
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	29
Eco24I	GRGCYC	3 cut(s)	31, 67, 113
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	2 cut(s)	127, 253
Eco53kI	GAGCTC	1 cut(s)	29
Eco88I	CYCGRG	2 cut(s)	24, 509
EcoICRI	GAGCTC	1 cut(s)	29
EcoT38I	GRGCYC	3 cut(s)	31, 67, 113
FaeI	CATG	1 cut(s)	232
FaiI	YATR	8 cut(s)	120, 215, 230, 262, 272, 357, 458, 471
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	5 cut(s)	50, 58, 187, 208, 340
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	3 cut(s)	31, 67, 113
Fsp4HI	GCNGC	5 cut(s)	50, 58, 187, 208, 340
FspBI	CTAG	2 cut(s)	96, 564
GluI	GCNGC	5 cut(s)	50, 58, 187, 208, 340
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	49, 218
HapII	CCGG	3 cut(s)	179, 219, 256
Hin1II	CATG	1 cut(s)	232
HpaII	CCGG	3 cut(s)	179, 219, 256
HphI	GGTGA	2 cut(s)	154, 539
Hpy188I	TCNGA	2 cut(s)	127, 134
Hpy188III	TCNNGA	6 cut(s)	12, 24, 106, 179, 378, 594
Hpy99I	CGWCG	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	406, 589
HpyCH4V	TGCA	4 cut(s)	90, 404, 473, 478
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 96, 224, 494
HpyF3I	CTNAG	3 cut(s)	315, 429, 580
HpySE526I	ACGT	2 cut(s)	406, 589
Hsp92II	CATG	1 cut(s)	232
Kpn2I	TCCGGA	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	202, 235, 284
LmnI	GCTCC	2 cut(s)	224, 502
Lsp1109I	GCAGC	3 cut(s)	44, 173, 194
LweI	GCATC	3 cut(s)	391, 484, 507
MaeI	CTAG	2 cut(s)	96, 564
MaeII	ACGT	2 cut(s)	406, 589
MaeIII	GTNAC	2 cut(s)	103, 310
MalI	GATC	3 cut(s)	204, 237, 286
MboI	GATC	3 cut(s)	202, 235, 284
MboII	GAAGA	4 cut(s)	31, 212, 307, 358
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	3 cut(s)	31, 67, 113
MluCI	AATT	6 cut(s)	241, 304, 367, 383, 436, 459
MmeI	TCCRAC	2 cut(s)	157, 480
MnlI	CCTC	9 cut(s)	91, 140, 158, 175, 215, 426, 518, 523, 532
MroI	TCCGGA	1 cut(s)	178
MspI	CCGG	3 cut(s)	179, 219, 256
Mva1269I	GAATGC	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	71, 96, 224, 494
NdeII	GATC	3 cut(s)	202, 235, 284
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	2 cut(s)	103, 310
PaeR7I	CTCGAG	1 cut(s)	24
PctI	GAATGC	1 cut(s)	429
PkrI	GCNGC	5 cut(s)	51, 59, 188, 209, 341
Ppu21I	YACGTR	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	3 cut(s)	47, 127, 253
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	2 cut(s)	266, 588
RsaNI	GTAC	2 cut(s)	265, 587
SacI	GAGCTC	1 cut(s)	31
SatI	GCNGC	5 cut(s)	50, 58, 187, 208, 340
Sau3AI	GATC	3 cut(s)	202, 235, 284
Sau96I	GGNCC	3 cut(s)	47, 127, 253
SduI	GDGCHC	3 cut(s)	31, 67, 113
SfaNI	GCATC	3 cut(s)	391, 484, 507
SfcI	CTRYAG	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	2 cut(s)	127, 253
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SpeI	ACTAGT	1 cut(s)	563
Sse9I	AATT	6 cut(s)	241, 304, 367, 383, 436, 459
SsiI	CCGC	2 cut(s)	50, 339
SspMI	CTAG	2 cut(s)	96, 564
SstI	GAGCTC	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	2 cut(s)	409, 592
TaqI	TCGA	1 cut(s)	25
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	6 cut(s)	241, 304, 367, 383, 436, 459
TauI	GCSGC	2 cut(s)	52, 342
TscAI	CASTG	2 cut(s)	59, 319
TseFI	GTSAC	2 cut(s)	103, 310
TseI	GCWGC	3 cut(s)	57, 186, 207
Tsp45I	GTSAC	2 cut(s)	103, 310
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	59, 319
VpaK11BI	GGWCC	2 cut(s)	127, 253
XapI	RAATTY	3 cut(s)	241, 304, 436
XhoI	CTCGAG	1 cut(s)	24
XspI	CTAG	2 cut(s)	96, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.