Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010896

Physical Location & Seq

Genomic Coordinates Forward (+)

13295010 .. 13296353

Gene Structure 1344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGTCGCAGAAACGGAGGCGGTCCAAAGCTTGATCTGAAGCTCAACCTTTCCCCACCAAGGCACAACCCTATGGCTGAGTCCCCGGGACGATCATCCACCATGTCACCAACGTCCCCACCGAGCTCATGCGTGTCGTCGGAGCTGACTCAGGATGACAACAACAATATGAGGTACTCCAACAGCCCCGAGGCAACTTCCATGGTGCTGGTGGGGTGCCCCAGGTGTCTCATGTACGTCATGCTATCCGAGGACGACCCGAAATGCCCCAAATGCAAGAGCACTGTTCTGCTGGACTTCCTCCATGAGAACAACACCACCATGAAGACAAGGAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.44

Weight (kDa)

8.68

Isoelectric Point (pI)

75.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn-ribbon_GIR1	PF24747	66 - 102	5.6e-29	GIR1-like zinc ribbon domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11600 AT5G06270 AT5G06270
fragaria_vesca	FvH4_6g19800
malus_domestica	MD03G1151000.v1.1 MD11G1170900.v1.1 MD12G1033200.v1.1 MD14G1034000.v1.1
prunus_persica	Prupe.6G139000_v2.0.a1 Prupe.7G099000_v2.0.a1
pyrus_communis	pycom03g10550 pycom11g14430
rosa_chinensis	RchiOBHm_Chr3g0475171
rosa_laevigata	RLG00000023859
rosa_multiflora	Rmu_sc0003093.1_g000033
rosa_rugosa	Rorug03G0147100
rosa_samantha	Rh3AG197000 Rh3BG227300 Rh3DG222500
rosa_wichuraiana	Rw3G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AciI	CCGC	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	176, 236
AfiI	CCNNNNNNNGG	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	5 cut(s)	31, 43, 126, 145, 339
AluI	AGCT	5 cut(s)	31, 43, 126, 145, 339
Alw21I	GWGCWC	2 cut(s)	128, 284
Alw26I	GTCTC	1 cut(s)	233
Ama87I	CYCGRG	2 cut(s)	85, 188
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	2 cut(s)	86, 87
AsuHPI	GGTGA	1 cut(s)	99
AvaI	CYCGRG	2 cut(s)	85, 188
AvaII	GGWCC	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	128, 284
BciT130I	CCWGG	1 cut(s)	223
BcnI	CCSGG	2 cut(s)	86, 87
BcoDI	GTCTC	1 cut(s)	233
Bme1390I	CCNGG	3 cut(s)	86, 87, 223
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	2 cut(s)	85, 188
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	3 cut(s)	86, 87, 223
BpiI	GAAGAC	1 cut(s)	332
BpuMI	CCSGG	2 cut(s)	86, 87
BsaJI	CCNNGG	7 cut(s)	59, 84, 85, 189, 201, 221, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	7 cut(s)	59, 84, 85, 189, 201, 221, 249
BseGI	GGATG	2 cut(s)	95, 160
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	69, 164
BseSI	GKGCMC	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	128, 284
BsiHKCI	CYCGRG	2 cut(s)	85, 188
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	3 cut(s)	67, 100, 102
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	3 cut(s)	67, 100, 102
BsoBI	CYCGRG	2 cut(s)	85, 188
Bsp1286I	GDGCHC	3 cut(s)	128, 221, 284
Bsp143I	GATC	2 cut(s)	34, 92
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	2 cut(s)	70, 163
BspLI	GGNNCC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	216
BssECI	CCNNGG	7 cut(s)	59, 84, 85, 189, 201, 221, 249
BssMI	GATC	2 cut(s)	34, 92
BssT1I	CCWWGG	2 cut(s)	59, 201
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	78, 150
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	95, 160
BstKTI	GATC	2 cut(s)	37, 95
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	34, 92
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	3 cut(s)	84, 85, 221
BstSLI	GKGCMC	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	95, 160
BtsIMutI	CAGTG	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	23
Cfr9I	CCCGGG	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	175, 235
CviAII	CATG	7 cut(s)	103, 129, 202, 232, 241, 305, 322
CviJI	RGCY	7 cut(s)	31, 43, 77, 126, 145, 186, 339
CviKI_1	RGCY	7 cut(s)	31, 43, 77, 126, 145, 186, 339
CviQI	GTAC	2 cut(s)	175, 235
DdeI	CTNAG	2 cut(s)	78, 150
DpnI	GATC	2 cut(s)	36, 94
DpnII	GATC	2 cut(s)	34, 92
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	59, 201
Eco24I	GRGCYC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	2 cut(s)	85, 188
EcoICRI	GAGCTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	59, 201
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	2 cut(s)	59, 201
FaeI	CATG	7 cut(s)	106, 132, 205, 235, 244, 308, 325
FaiI	YATR	9 cut(s)	74, 104, 130, 170, 203, 233, 242, 306, 323
FaqI	GGGAC	3 cut(s)	67, 100, 102
FatI	CATG	7 cut(s)	102, 128, 201, 231, 240, 304, 321
FokI	GGATG	2 cut(s)	82, 167
FriOI	GRGCYC	1 cut(s)	128
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	7 cut(s)	106, 132, 205, 235, 244, 308, 325
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	3 cut(s)	4, 80, 148
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	39, 142, 250
Hpy188III	TCNNGA	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	2 cut(s)	113, 237
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	2 cut(s)	78, 150
HpySE526I	ACGT	2 cut(s)	113, 237
Hsp92II	CATG	7 cut(s)	106, 132, 205, 235, 244, 308, 325
Kzo9I	GATC	2 cut(s)	34, 92
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	99, 137, 194, 208, 235, 278
MaeII	ACGT	2 cut(s)	113, 237
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	2 cut(s)	36, 94
MboI	GATC	2 cut(s)	34, 92
MboII	GAAGA	1 cut(s)	337
MhlI	GDGCHC	3 cut(s)	128, 221, 284
MlyI	GAGTC	3 cut(s)	13, 89, 142
MmeI	TCCRAC	2 cut(s)	120, 204
MnlI	CCTC	5 cut(s)	11, 165, 184, 244, 311
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	3 cut(s)	86, 87, 223
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	273
NciI	CCSGG	2 cut(s)	86, 87
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	2 cut(s)	34, 92
NlaIII	CATG	7 cut(s)	106, 132, 205, 235, 244, 308, 325
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PleI	GAGTC	3 cut(s)	12, 88, 142
PpsI	GAGTC	3 cut(s)	12, 88, 142
Psp124BI	GAGCTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	23
RsaI	GTAC	2 cut(s)	176, 236
RsaNI	GTAC	2 cut(s)	175, 235
RseI	CAYNNNNRTG	1 cut(s)	320
SacI	GAGCTC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	329
Sau3AI	GATC	2 cut(s)	34, 92
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	3 cut(s)	13, 89, 142
ScrFI	CCNGG	3 cut(s)	86, 87, 223
SduI	GDGCHC	3 cut(s)	128, 221, 284
SinI	GGWCC	1 cut(s)	23
SmaI	CCCGGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	320
SsiI	CCGC	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	84, 85, 221
StyI	CCWWGG	2 cut(s)	59, 201
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	2 cut(s)	116, 240
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	30
TspMI	CCCGGG	1 cut(s)	85
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmaI	CCCGGG	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.