Prupe.7G099000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010896
Physical Location & Seq
Reverse (-)
12994579 .. 12995951
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G099000.1

Sequence Viewer

Length: 369 bp
ATGAGTAGGAGGAATGGAAGTGGTCCAAAGCTTGATCTGAAGCTGAACCTGTCACCACCAAGGGCAAGTAATAATAATCCACTGCTGCAATCACCAAGAAGATCAGCTACTGTTTCACCAACATCACCACCAAGCTCATGTGTTTCCTCTGAGCTCAATCAGGAAGACAATTTCAGATACTCAAACAGCCCTGAGGCCGAGGCCACTTCCATGGTGCTTGTAGGTTGCCCAAGGTGCCTCATGTATGTGATGCTTTCAGAAGATGACCCAAAATGCCCCAAATGCAAGAGCACTGTTTTGCTTGACTTTGTTCATGACAACAACTACAACAACAACTCAACAACAACCACGAAGACAAGGAGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.47

Weight (kDa)

8.93

Isoelectric Point (pI)

78.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 59
AluBI AGCT 6 cut(s) 31, 43, 107, 135, 154, 366
AluI AGCT 6 cut(s) 31, 43, 107, 135, 154, 366
Alw21I GWGCWC 2 cut(s) 156, 293
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 2 cut(s) 195, 201
ApeKI GCWGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 4 cut(s) 45, 84, 108, 117
AvaII GGWCC 1 cut(s) 23
AxyI CCTNAGG 1 cut(s) 192
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 156
BarI GAAGNNNNNNTAC 2 cut(s) 91, 123
BbsI GAAGAC 2 cut(s) 171, 359
Bbv12I GWGCWC 2 cut(s) 156, 293
BbvI GCAGC 1 cut(s) 72
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 236
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 2 cut(s) 171, 359
BsaJI CCNNGG 4 cut(s) 59, 198, 210, 230
Bse21I CCTNAGG 1 cut(s) 192
BseDI CCNNGG 4 cut(s) 59, 198, 210, 230
BseMII CTCAG 2 cut(s) 141, 183
BseXI GCAGC 1 cut(s) 72
BshFI GGCC 2 cut(s) 197, 203
BshNI GGYRCC 1 cut(s) 234
BsiHKAI GWGCWC 2 cut(s) 156, 293
BsnI GGCC 2 cut(s) 197, 203
Bsp1286I GDGCHC 2 cut(s) 156, 293
Bsp143I GATC 2 cut(s) 34, 101
Bsp19I CCATGG 1 cut(s) 210
BspANI GGCC 2 cut(s) 197, 203
BspCNI CTCAG 2 cut(s) 142, 184
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 234
BssECI CCNNGG 4 cut(s) 59, 198, 210, 230
BssMI GATC 2 cut(s) 34, 101
BssT1I CCWWGG 3 cut(s) 59, 210, 230
Bst4CI ACNGT 2 cut(s) 112, 295
BstDEI CTNAG 2 cut(s) 150, 192
BstDSI CCRYGG 1 cut(s) 210
BstKTI GATC 2 cut(s) 37, 104
BstMBI GATC 2 cut(s) 34, 101
BstMWI GCNNNNNNNGC 2 cut(s) 234, 282
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 2 cut(s) 171, 359
BstXI CCANNNNNNTGG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 192
BsuRI GGCC 2 cut(s) 197, 203
BtgI CCRYGG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 2 cut(s) 80, 291
CaiI CAGNNNCTG 1 cut(s) 110
CciI TCATGA 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 4 cut(s) 138, 211, 241, 314
CviJI RGCY 9 cut(s) 31, 43, 107, 135, 154, 189, 197, 203, 366
CviKI_1 RGCY 9 cut(s) 31, 43, 107, 135, 154, 189, 197, 203, 366
DdeI CTNAG 2 cut(s) 150, 192
DpnI GATC 2 cut(s) 36, 103
DpnII GATC 2 cut(s) 34, 101
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 3 cut(s) 59, 210, 230
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 3 cut(s) 59, 210, 230
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 3 cut(s) 59, 210, 230
FaeI CATG 4 cut(s) 141, 214, 244, 317
FaiI YATR 5 cut(s) 139, 212, 242, 246, 315
FatI CATG 4 cut(s) 137, 210, 240, 313
Fnu4HI GCNGC 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 197, 203
Hin1II CATG 4 cut(s) 141, 214, 244, 317
HindIII AAGCTT 1 cut(s) 29
HphI GGTGA 4 cut(s) 45, 84, 108, 117
Hpy188I TCNGA 4 cut(s) 39, 151, 176, 259
Hpy188III TCNNGA 2 cut(s) 161, 314
HpyCH4III ACNGT 2 cut(s) 112, 295
HpyCH4V TGCA 2 cut(s) 88, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 282
HpyF3I CTNAG 2 cut(s) 150, 192
Hsp92II CATG 4 cut(s) 141, 214, 244, 317
Kzo9I GATC 2 cut(s) 34, 101
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 3 cut(s) 62, 146, 204
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 51
MalI GATC 2 cut(s) 36, 103
MboI GATC 2 cut(s) 34, 101
MboII GAAGA 4 cut(s) 111, 176, 272, 364
MhlI GDGCHC 2 cut(s) 156, 293
MluCI AATT 1 cut(s) 169
MnlI CCTC 6 cut(s) 3, 157, 187, 193, 248, 354
MslI CAYNNNNRTG 2 cut(s) 209, 245
MwoI GCNNNNNNNGC 2 cut(s) 234, 282
NcoI CCATGG 1 cut(s) 210
NdeII GATC 2 cut(s) 34, 101
NlaIII CATG 4 cut(s) 141, 214, 244, 317
NlaIV GGNNCC 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 51
PagI TCATGA 1 cut(s) 313
PkrI GCNGC 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 110
RseI CAYNNNNRTG 2 cut(s) 209, 245
SacI GAGCTC 1 cut(s) 156
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 2 cut(s) 34, 101
Sau96I GGNCC 1 cut(s) 23
SduI GDGCHC 2 cut(s) 156, 293
SetI ASST 9 cut(s) 33, 45, 51, 109, 137, 156, 226, 236, 368
SfaNI GCATC 1 cut(s) 240
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 209, 245
Sse9I AATT 1 cut(s) 169
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 3 cut(s) 59, 210, 230
TaaI ACNGT 2 cut(s) 112, 295
TasI AATT 1 cut(s) 169
TscAI CASTG 2 cut(s) 87, 298
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 2 cut(s) 87, 298
VpaK11BI GGWCC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.