RLG00000023859

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010896
Physical Location & Seq
Reverse (-)
29252837 .. 29253767
931 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023859

Sequence Viewer

Length: 501 bp
ATGAATGATGGAAGCCCTCCCTGCACTTTCTTGTCATGGTTCTTGCCTAACCTCCTTCTTCCTCACCAATCTTTCCATCAATTAGGTTCAGAGCAGCCCTGCAGACTCTGTTTCTCCCCTGTTTCACTAGCTAGAGGTTTCTCAATTCCCCAAGGTATCATGAGTCGCAGAAACGGAGGCGGTCCAAAGCTTGATCTGAAGCTTAACCTTTCCCCACCGAGGGCAAACCGTACGGCTGAGTCTCCCGGACGATCATCCACCGTGTCCCCCACGTCCCCACCGAGCTCATGCGTGTCGTCGGAGCTGACTCAGGACGACAACAACAACATGAGGTACTCCAACAGCCCCGAGGCCACTTCCATGGTGCTTGTGGGTTGCCCCAGGTGTCTCATGTACGTCATGCTATCCGAGGACGACCCGAAATGCCCCAAATGCAAGAGCACTGTTCTGCTGGACTTCCTCCATGAGAACAGCAACACCATGACGACAAGGAAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.18

Weight (kDa)

8.47

Isoelectric Point (pI)

67.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn-ribbon_GIR1 PF24747 119 - 155 1.1e-28 GIR1-like zinc ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 3 cut(s) 232, 335, 395
AfiI CCNNNNNNNGG 2 cut(s) 219, 220
AjiI CACGTC 1 cut(s) 273
AjnI CCWGG 1 cut(s) 380
AluBI AGCT 6 cut(s) 131, 190, 202, 285, 304, 498
AluI AGCT 6 cut(s) 131, 190, 202, 285, 304, 498
Alw21I GWGCWC 2 cut(s) 287, 443
Alw26I GTCTC 2 cut(s) 246, 392
AlwNI CAGNNNCTG 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 287
Bbv12I GWGCWC 2 cut(s) 287, 443
BbvI GCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 2, 84
BceAI ACGGC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 382
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 246, 392
BfaI CTAG 2 cut(s) 128, 132
BfmI CTRYAG 1 cut(s) 100
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 246, 382
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 347
BmgBI CACGTC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 246, 382
BpuMI CCSGG 1 cut(s) 246
BsaJI CCNNGG 6 cut(s) 151, 218, 348, 360, 380, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 220
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 6 cut(s) 151, 218, 348, 360, 380, 408
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 219, 220
BseMII CTCAG 2 cut(s) 228, 323
BseXI GCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 7
BshFI GGCC 1 cut(s) 353
BsiHKAI GWGCWC 2 cut(s) 287, 443
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 1 cut(s) 246
BsiWI CGTACG 1 cut(s) 230
BslFI GGGAC 2 cut(s) 250, 259
BslI CCNNNNNNNGG 2 cut(s) 219, 220
BsmAI GTCTC 2 cut(s) 246, 392
BsmFI GGGAC 2 cut(s) 250, 259
BsnI GGCC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 287, 443
Bsp143I GATC 2 cut(s) 193, 251
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 2 cut(s) 229, 322
BspHI TCATGA 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 104
BspQI GCTCTTC 1 cut(s) 488
BssECI CCNNGG 6 cut(s) 151, 218, 348, 360, 380, 408
BssMI GATC 2 cut(s) 193, 251
BssT1I CCWWGG 2 cut(s) 151, 360
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 3 cut(s) 230, 262, 445
Bst6I CTCTTC 1 cut(s) 488
BstDEI CTNAG 2 cut(s) 237, 309
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 2 cut(s) 196, 254
BstMAI GTCTC 2 cut(s) 246, 392
BstMBI GATC 2 cut(s) 193, 251
BstMWI GCNNNNNNNGC 2 cut(s) 21, 432
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 2 cut(s) 244, 380
BstSFI CTRYAG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 361
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 360
BtrI CACGTC 1 cut(s) 273
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 441
CaiI CAGNNNCTG 1 cut(s) 108
CciI TCATGA 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 231, 334, 394
CviAII CATG 9 cut(s) 36, 160, 288, 328, 361, 391, 400, 464, 481
CviQI GTAC 3 cut(s) 231, 334, 394
DdeI CTNAG 2 cut(s) 237, 309
DpnI GATC 2 cut(s) 195, 253
DpnII GATC 2 cut(s) 193, 251
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Ecl136II GAGCTC 1 cut(s) 285
Eco130I CCWWGG 2 cut(s) 151, 360
Eco24I GRGCYC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 182
Eco53kI GAGCTC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 380
EcoT14I CCWWGG 2 cut(s) 151, 360
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 2 cut(s) 151, 360
FaeI CATG 9 cut(s) 39, 163, 291, 331, 364, 394, 403, 467, 484
FaiI YATR 9 cut(s) 37, 161, 289, 329, 362, 392, 401, 465, 482
FaqI GGGAC 2 cut(s) 250, 259
FatI CATG 9 cut(s) 35, 159, 287, 327, 360, 390, 399, 463, 480
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 2 cut(s) 128, 132
GluI GCNGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 246
Hin1II CATG 9 cut(s) 39, 163, 291, 331, 364, 394, 403, 467, 484
HindIII AAGCTT 2 cut(s) 188, 200
HinfI GANTC 4 cut(s) 105, 163, 239, 307
HpaII CCGG 1 cut(s) 246
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 4 cut(s) 91, 198, 301, 409
Hpy188III TCNNGA 2 cut(s) 160, 311
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 3 cut(s) 230, 262, 445
HpyCH4IV ACGT 2 cut(s) 272, 396
HpyCH4V TGCA 3 cut(s) 24, 102, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 432
HpyF3I CTNAG 2 cut(s) 237, 309
HpySE526I ACGT 2 cut(s) 272, 396
Hsp92II CATG 9 cut(s) 39, 163, 291, 331, 364, 394, 403, 467, 484
Kzo9I GATC 2 cut(s) 193, 251
LguI GCTCTTC 1 cut(s) 488
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 8 cut(s) 34, 112, 132, 259, 296, 367, 394, 437
Lsp1109I GCAGC 1 cut(s) 106
MaeI CTAG 2 cut(s) 128, 132
MaeII ACGT 2 cut(s) 272, 396
MalI GATC 2 cut(s) 195, 253
MboI GATC 2 cut(s) 193, 251
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 2 cut(s) 287, 443
MluCI AATT 2 cut(s) 80, 144
MlyI GAGTC 4 cut(s) 99, 172, 248, 301
MmeI TCCRAC 2 cut(s) 279, 363
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 246, 382
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 21, 432
NciI CCSGG 1 cut(s) 246
NcoI CCATGG 1 cut(s) 360
NdeII GATC 2 cut(s) 193, 251
NlaIII CATG 9 cut(s) 39, 163, 291, 331, 364, 394, 403, 467, 484
PagI TCATGA 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 278
Pfl23II CGTACG 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 4 cut(s) 99, 171, 247, 301
PpsI GAGTC 4 cut(s) 99, 171, 247, 301
Psp124BI GAGCTC 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PspLI CGTACG 1 cut(s) 230
PspPI GGNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 104
PstNI CAGNNNCTG 1 cut(s) 108
RsaI GTAC 3 cut(s) 232, 335, 395
RsaNI GTAC 3 cut(s) 231, 334, 394
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 2 cut(s) 193, 251
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 4 cut(s) 99, 172, 248, 301
ScrFI CCNGG 2 cut(s) 246, 382
SduI GDGCHC 2 cut(s) 287, 443
SfcI CTRYAG 1 cut(s) 100
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 359
Sse9I AATT 2 cut(s) 80, 144
SsiI CCGC 1 cut(s) 180
SspMI CTAG 2 cut(s) 128, 132
SstI GAGCTC 1 cut(s) 287
StyD4I CCNGG 2 cut(s) 244, 380
StyI CCWWGG 2 cut(s) 151, 360
TaaI ACNGT 3 cut(s) 230, 262, 445
TaiI ACGT 2 cut(s) 275, 399
TasI AATT 2 cut(s) 80, 144
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 448
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XspI CTAG 2 cut(s) 128, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.