Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003093.1

Orthogroup ID

OG0010896

Physical Location & Seq

Genomic Coordinates Forward (+)

157897 .. 164558

Gene Structure 6662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003093.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgggagagaagatggggaggaatcctattggcgacgacatggcaaaggaagaggctggtggtgggactgcacatgagggtcaacaccccatccacctcctaatcacttatccccaagaagaaggcggacttgataaggaagaaggccacagaggttggcgcctgagtcaatgcagtcgagacgacaatggggcacctcagggcgggcggcgatggaggttgaaggagaagatcgggtcttcttctttctcgttcacaacatcgtcgctgttctctgacgccgccggtgccatcgtccccggattccggatttcggtgaccggtcacctgattccggtcatcggtcgccggattccagtcaccggtctcatgaatcgggtcaccagaacgccaccggagtcatgttcagagcagccctgcagactctgtttctcccctgtttcactagctagaggtttctcaattccccaaggtatcatgagtcgcagaaacggaggcggtccgaagcttgatctgaagcttaacctttccccaccgagggcaaaccgtacggctgagtctcccggacgatcatccaccgtgtcccccacgtccccgccgagctcatgcgtgtcgtcggagctgactcaggacgacaacaacaacatgaggtactccaacagccccgaggccacttccatggtgctcgtgggttgccccaggtgtctcatgtacgtcatgctatccgaggacgacccgaaatgccccaaatgcaagagcactgttctgctggacttcctccatgagaacagcaacaccatgacgacaaggaagagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

29.49

Weight (kDa)

8.75

Isoelectric Point (pI)

59.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11600 AT5G06270 AT5G06270
fragaria_vesca	FvH4_6g19800
malus_domestica	MD03G1151000.v1.1 MD11G1170900.v1.1 MD12G1033200.v1.1 MD14G1034000.v1.1
prunus_persica	Prupe.6G139000_v2.0.a1 Prupe.7G099000_v2.0.a1
pyrus_communis	pycom03g10550 pycom11g14430
rosa_chinensis	RchiOBHm_Chr3g0475171
rosa_laevigata	RLG00000023859
rosa_multiflora	Rmu_sc0003093.1_g000033
rosa_rugosa	Rorug03G0147100
rosa_samantha	Rh3AG197000 Rh3BG227300 Rh3DG222500
rosa_wichuraiana	Rw3G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	159, 193, 287
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	6 cut(s)	126, 204, 208, 282, 498, 596
AcuI	CTGAAG	1 cut(s)	536
AcyI	GRCGYC	2 cut(s)	160, 279
AfaI	GTAC	3 cut(s)	550, 653, 713
AfiI	CCNNNNNNNGG	8 cut(s)	203, 306, 313, 334, 341, 362, 537, 538
AgeI	ACCGGT	2 cut(s)	320, 362
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	591
AjnI	CCWGG	1 cut(s)	698
AluBI	AGCT	6 cut(s)	449, 508, 520, 603, 622, 816
AluI	AGCT	6 cut(s)	449, 508, 520, 603, 622, 816
Alw21I	GWGCWC	3 cut(s)	605, 687, 761
Alw26I	GTCTC	4 cut(s)	174, 371, 564, 710
AlwNI	CAGNNNCTG	1 cut(s)	426
Ama87I	CYCGRG	1 cut(s)	665
Aor13HI	TCCGGA	1 cut(s)	306
AoxI	GGCC	2 cut(s)	145, 669
ApeKI	GCWGC	1 cut(s)	412
AsiGI	ACCGGT	2 cut(s)	320, 362
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	2 cut(s)	300, 564
AsuHPI	GGTGA	4 cut(s)	317, 328, 352, 373
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	196
BanI	GGYRCC	3 cut(s)	159, 193, 287
BanII	GRGCYC	1 cut(s)	605
BauI	CACGAG	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	3 cut(s)	605, 687, 761
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	4 cut(s)	7, 98, 207, 299
BceAI	ACGGC	1 cut(s)	567
BciT130I	CCWGG	1 cut(s)	700
BcnI	CCSGG	2 cut(s)	300, 564
BcoDI	GTCTC	4 cut(s)	174, 371, 564, 710
BfaI	CTAG	2 cut(s)	446, 450
BfmI	CTRYAG	1 cut(s)	418
BfoI	RGCGCY	1 cut(s)	163
BisI	GCNGC	3 cut(s)	209, 282, 413
BlsI	GCNGC	3 cut(s)	210, 283, 414
Bme1390I	CCNGG	3 cut(s)	300, 564, 700
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	665
BmgBI	CACGTC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	161, 195, 289
BmrFI	CCNGG	3 cut(s)	300, 564, 700
BpiI	GAAGAC	1 cut(s)	231
BpuMI	CCSGG	2 cut(s)	300, 564
BsaHI	GRCGYC	2 cut(s)	160, 279
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	7 cut(s)	298, 469, 536, 666, 678, 698, 726
BsaWI	WCCGGW	5 cut(s)	306, 320, 334, 362, 394
Bsc4I	CCNNNNNNNGG	8 cut(s)	203, 306, 313, 334, 341, 362, 537, 538
Bse118I	RCCGGY	3 cut(s)	284, 320, 362
Bse1I	ACTGG	1 cut(s)	356
Bse21I	CCTNAGG	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	700
BseDI	CCNNGG	7 cut(s)	298, 469, 536, 666, 678, 698, 726
BseGI	GGATG	2 cut(s)	90, 572
BseLI	CCNNNNNNNGG	8 cut(s)	203, 306, 313, 334, 341, 362, 537, 538
BseMII	CTCAG	4 cut(s)	155, 212, 546, 641
BseNI	ACTGG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	2 cut(s)	147, 671
BshNI	GGYRCC	3 cut(s)	159, 193, 287
BshTI	ACCGGT	2 cut(s)	320, 362
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	3 cut(s)	605, 687, 761
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	9 cut(s)	285, 300, 307, 321, 335, 349, 363, 395, 564
BsiWI	CGTACG	1 cut(s)	548
BslFI	GGGAC	4 cut(s)	79, 281, 568, 577
BslI	CCNNNNNNNGG	8 cut(s)	203, 306, 313, 334, 341, 362, 537, 538
BsmAI	GTCTC	4 cut(s)	174, 371, 564, 710
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	4 cut(s)	79, 281, 568, 577
BsnI	GGCC	2 cut(s)	147, 671
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	665
Bsp1286I	GDGCHC	4 cut(s)	196, 605, 687, 761
Bsp13I	TCCGGA	1 cut(s)	306
Bsp143I	GATC	3 cut(s)	231, 511, 569
Bsp19I	CCATGG	1 cut(s)	678
BspACI	CCGC	6 cut(s)	126, 204, 208, 282, 498, 596
BspANI	GGCC	2 cut(s)	147, 671
BspCNI	CTCAG	4 cut(s)	156, 211, 547, 640
BspEI	TCCGGA	1 cut(s)	306
BspHI	TCATGA	2 cut(s)	369, 477
BspLI	GGNNCC	3 cut(s)	161, 195, 289
BspMAI	CTGCAG	1 cut(s)	422
BspQI	GCTCTTC	1 cut(s)	806
BspT107I	GGYRCC	3 cut(s)	159, 193, 287
BspTNI	GGTCTC	1 cut(s)	371
BsrFI	RCCGGY	3 cut(s)	284, 320, 362
BsrI	ACTGG	1 cut(s)	356
BssAI	RCCGGY	3 cut(s)	284, 320, 362
BssECI	CCNNGG	7 cut(s)	298, 469, 536, 666, 678, 698, 726
BssMI	GATC	3 cut(s)	231, 511, 569
BssNI	GRCGYC	2 cut(s)	160, 279
BssSI	CACGAG	1 cut(s)	686
BssT1I	CCWWGG	2 cut(s)	469, 678
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	3 cut(s)	548, 580, 763
Bst6I	CTCTTC	2 cut(s)	45, 806
BstACI	GRCGYC	2 cut(s)	160, 279
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	4 cut(s)	164, 198, 555, 627
BstDSI	CCRYGG	1 cut(s)	678
BstEII	GGTNACC	3 cut(s)	316, 323, 379
BstF5I	GGATG	2 cut(s)	90, 572
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	3 cut(s)	234, 514, 572
BstMAI	GTCTC	4 cut(s)	174, 371, 564, 710
BstMBI	GATC	3 cut(s)	231, 511, 569
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 750
BstNI	CCWGG	1 cut(s)	700
BstPI	GGTNACC	3 cut(s)	316, 323, 379
BstSCI	CCNGG	3 cut(s)	298, 562, 698
BstSFI	CTRYAG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	679
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	147, 671
BtgI	CCRYGG	1 cut(s)	678
BtgZI	GCGATG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	591
BtsCI	GGATG	2 cut(s)	90, 572
BtsIMutI	CAGTG	1 cut(s)	759
Cac8I	GCNNGC	1 cut(s)	206
CaiI	CAGNNNCTG	1 cut(s)	426
CciI	TCATGA	2 cut(s)	369, 477
CfoI	GCGC	1 cut(s)	162
Cfr10I	RCCGGY	3 cut(s)	284, 320, 362
Cfr13I	GGNCC	1 cut(s)	500
CpoI	CGGWCCG	1 cut(s)	500
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	549, 652, 712
CspAI	ACCGGT	2 cut(s)	320, 362
CspCI	CAANNNNNGTGG	2 cut(s)	137, 172
CspI	CGGWCCG	1 cut(s)	500
CviQI	GTAC	3 cut(s)	549, 652, 712
DdeI	CTNAG	4 cut(s)	164, 198, 555, 627
DinI	GGCGCC	1 cut(s)	161
DpnI	GATC	3 cut(s)	233, 513, 571
DpnII	GATC	3 cut(s)	231, 511, 569
Eam1104I	CTCTTC	2 cut(s)	45, 806
EarI	CTCTTC	2 cut(s)	45, 806
EciI	GGCGGA	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	603
Eco130I	CCWWGG	2 cut(s)	469, 678
Eco24I	GRGCYC	1 cut(s)	605
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	500
Eco53kI	GAGCTC	1 cut(s)	603
Eco57I	CTGAAG	1 cut(s)	536
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	665
Eco91I	GGTNACC	3 cut(s)	316, 323, 379
EcoICRI	GAGCTC	1 cut(s)	603
EcoO65I	GGTNACC	3 cut(s)	316, 323, 379
EcoRII	CCWGG	1 cut(s)	698
EcoT14I	CCWWGG	2 cut(s)	469, 678
EcoT38I	GRGCYC	1 cut(s)	605
EgeI	GGCGCC	1 cut(s)	161
EheI	GGCGCC	1 cut(s)	161
ErhI	CCWWGG	2 cut(s)	469, 678
Esp3I	CGTCTC	1 cut(s)	174
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	4 cut(s)	79, 281, 568, 577
FauI	CCCGC	2 cut(s)	197, 603
Fnu4HI	GCNGC	3 cut(s)	209, 282, 413
FokI	GGATG	2 cut(s)	77, 559
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	3 cut(s)	209, 282, 413
FspBI	CTAG	2 cut(s)	446, 450
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	3 cut(s)	209, 282, 413
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	147, 671
HapII	CCGG	9 cut(s)	285, 300, 307, 321, 335, 349, 363, 395, 564
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	162
Hin1I	GRCGYC	2 cut(s)	160, 279
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HindIII	AAGCTT	2 cut(s)	506, 518
HpaII	CCGG	9 cut(s)	285, 300, 307, 321, 335, 349, 363, 395, 564
HphI	GGTGA	4 cut(s)	317, 328, 352, 373
Hpy166II	GTNNAC	2 cut(s)	83, 255
Hpy188I	TCNGA	6 cut(s)	277, 409, 504, 516, 619, 727
Hpy188III	TCNNGA	5 cut(s)	179, 307, 370, 478, 629
Hpy8I	GTNNAC	2 cut(s)	83, 255
Hpy99I	CGWCG	3 cut(s)	38, 268, 619
HpyAV	CCTTC	3 cut(s)	116, 137, 217
HpyCH4III	ACNGT	3 cut(s)	548, 580, 763
HpyCH4IV	ACGT	2 cut(s)	590, 714
HpyCH4V	TGCA	4 cut(s)	71, 174, 420, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 750
HpyF3I	CTNAG	4 cut(s)	164, 198, 555, 627
HpySE526I	ACGT	2 cut(s)	590, 714
Hsp92I	GRCGYC	2 cut(s)	160, 279
HspAI	GCGC	1 cut(s)	160
KasI	GGCGCC	1 cut(s)	159
Kpn2I	TCCGGA	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	231, 511, 569
LguI	GCTCTTC	1 cut(s)	806
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	1 cut(s)	424
MaeI	CTAG	2 cut(s)	446, 450
MaeII	ACGT	2 cut(s)	590, 714
MaeIII	GTNAC	4 cut(s)	316, 323, 358, 379
MalI	GATC	3 cut(s)	233, 513, 571
MboI	GATC	3 cut(s)	231, 511, 569
MboII	GAAGA	7 cut(s)	22, 62, 131, 152, 231, 234, 241
MhlI	GDGCHC	4 cut(s)	196, 605, 687, 761
MluCI	AATT	1 cut(s)	462
Mly113I	GGCGCC	1 cut(s)	160
MlyI	GAGTC	6 cut(s)	175, 407, 417, 490, 566, 619
MmeI	TCCRAC	2 cut(s)	597, 681
MroI	TCCGGA	1 cut(s)	306
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	1 cut(s)	677
MspI	CCGG	9 cut(s)	285, 300, 307, 321, 335, 349, 363, 395, 564
MspR9I	CCNGG	3 cut(s)	300, 564, 700
MvaI	CCWGG	1 cut(s)	700
MwoI	GCNNNNNNNGC	2 cut(s)	287, 750
NarI	GGCGCC	1 cut(s)	160
NciI	CCSGG	2 cut(s)	300, 564
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	3 cut(s)	231, 511, 569
NlaIV	GGNNCC	3 cut(s)	161, 195, 289
NmeAIII	GCCGAG	1 cut(s)	624
NmuCI	GTSAC	4 cut(s)	316, 323, 358, 379
PagI	TCATGA	2 cut(s)	369, 477
PciSI	GCTCTTC	1 cut(s)	806
PcsI	WCGNNNNNNNCGW	1 cut(s)	596
PfeI	GAWTC	5 cut(s)	22, 303, 331, 352, 373
Pfl23II	CGTACG	1 cut(s)	548
PfoI	TCCNGGA	1 cut(s)	562
PinAI	ACCGGT	2 cut(s)	320, 362
PkrI	GCNGC	3 cut(s)	210, 283, 414
PleI	GAGTC	6 cut(s)	174, 406, 417, 489, 565, 619
PluTI	GGCGCC	1 cut(s)	163
PpsI	GAGTC	6 cut(s)	174, 406, 417, 489, 565, 619
Psp124BI	GAGCTC	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	698
PspEI	GGTNACC	3 cut(s)	316, 323, 379
PspGI	CCWGG	1 cut(s)	698
PspLI	CGTACG	1 cut(s)	548
PspN4I	GGNNCC	3 cut(s)	161, 195, 289
PspPI	GGNCC	1 cut(s)	500
PstI	CTGCAG	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	426
RsaI	GTAC	3 cut(s)	550, 653, 713
RsaNI	GTAC	3 cut(s)	549, 652, 712
RseI	CAYNNNNRTG	1 cut(s)	677
Rsr2I	CGGWCCG	1 cut(s)	500
RsrII	CGGWCCG	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	605
SapI	GCTCTTC	1 cut(s)	806
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	3 cut(s)	209, 282, 413
Sau3AI	GATC	3 cut(s)	231, 511, 569
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	6 cut(s)	175, 407, 417, 490, 566, 619
ScrFI	CCNGG	3 cut(s)	300, 564, 700
SduI	GDGCHC	4 cut(s)	196, 605, 687, 761
SfcI	CTRYAG	1 cut(s)	418
SfoI	GGCGCC	1 cut(s)	161
SgrAI	CRCCGGYG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	677
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	6 cut(s)	126, 204, 208, 282, 498, 596
SspDI	GGCGCC	1 cut(s)	159
SspMI	CTAG	2 cut(s)	446, 450
SstI	GAGCTC	1 cut(s)	605
StyD4I	CCNGG	3 cut(s)	298, 562, 698
StyI	CCWWGG	2 cut(s)	469, 678
TaaI	ACNGT	3 cut(s)	548, 580, 763
TaiI	ACGT	2 cut(s)	593, 717
TaqI	TCGA	1 cut(s)	178
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	1 cut(s)	462
TauI	GCSGC	2 cut(s)	211, 284
TfiI	GAWTC	5 cut(s)	22, 303, 331, 352, 373
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	4 cut(s)	316, 323, 358, 379
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	4 cut(s)	316, 323, 358, 379
TspDTI	ATGAA	1 cut(s)	386
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	766
VpaK11BI	GGWCC	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	685
XspI	CTAG	2 cut(s)	446, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.