Prupe.6G139000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010896
Physical Location & Seq
Forward (+)
11290777 .. 11292058
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G139000.1

Sequence Viewer

Length: 333 bp
ATGAGCAGAAGAGGAAGTACTAGTCCAAAGCTTGAATTGAGGCTAAACCTGTCTCCTCCAAGAACTCACTCACCAATTGGCTCCCCGAATGCCTCCGAATCATCCTCGAACATGTCGCTTGACCGCGGCTCTTGCGTGTCATCGGAGCCTGAACAACAGACGATGTACTACCAGAGCAGCCCTGAAGCGAAGGCCATGGTGCTTGCCGGGTGTCCACGGTGCCTCATGTATGTCATGCTATCTGATGCCGATCCGAAGTGCCCAAAATGCAAAAGCACAGTCTTGCTCGATTTCCTTATTAACGAAGAAAGCACCAAGAGGACAAGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.11

Weight (kDa)

8.68

Isoelectric Point (pI)

87.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 219
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 124, 126
AclWI GGATC 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 2 cut(s) 19, 167
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 35
AhlI ACTAGT 1 cut(s) 20
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 245
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 177
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 219
BarI GAAGNNNNNNTAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 189
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 127, 178
BlsI GCNGC 2 cut(s) 128, 179
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 208
BmiI GGNNCC 3 cut(s) 82, 147, 221
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 124, 195, 215
Bse8I GATNNNNATC 1 cut(s) 249
BseDI CCNNGG 3 cut(s) 124, 195, 215
BseGI GGATG 1 cut(s) 101
BseJI GATNNNNATC 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 1 cut(s) 250
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 2 cut(s) 124, 126
BspANI GGCC 1 cut(s) 194
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 82, 147, 221
BspPI GGATC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 219
BssECI CCNNGG 3 cut(s) 124, 195, 215
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 219, 280
Bst6I CTCTTC 1 cut(s) 4
BstC8I GCNNGC 1 cut(s) 204
BstDSI CCRYGG 3 cut(s) 124, 195, 215
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 132, 267
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 3 cut(s) 124, 195, 215
BtsCI GGATG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 204
Cfr42I CCGCGG 1 cut(s) 127
Csp6I GTAC 2 cut(s) 18, 166
CviAII CATG 4 cut(s) 112, 196, 226, 235
CviJI RGCY 7 cut(s) 31, 43, 81, 129, 148, 180, 194
CviKI_1 RGCY 7 cut(s) 31, 43, 81, 129, 148, 180, 194
CviQI GTAC 2 cut(s) 18, 166
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
Eco130I CCWWGG 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 4 cut(s) 115, 199, 229, 238
FaiI YATR 6 cut(s) 113, 197, 227, 231, 236, 331
FatI CATG 4 cut(s) 111, 195, 225, 234
Fnu4HI GCNGC 2 cut(s) 127, 178
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 127, 178
FspBI CTAG 1 cut(s) 21
GluI GCNGC 2 cut(s) 127, 178
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 207
Hin1II CATG 4 cut(s) 115, 199, 229, 238
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 1 cut(s) 98
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 4 cut(s) 97, 145, 244, 255
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 219, 280
HpyCH4V TGCA 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 267
Hsp92II CATG 4 cut(s) 115, 199, 229, 238
KspI CCGCGG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 86, 145
LpnPI CCDG 5 cut(s) 62, 162, 185, 195, 220
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 235
MaeI CTAG 1 cut(s) 21
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 2 cut(s) 21, 317
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 2 cut(s) 35, 75
MnlI CCTC 7 cut(s) 5, 33, 66, 103, 115, 233, 312
MseI TTAA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 94
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 132, 267
NciI CCSGG 1 cut(s) 208
NcoI CCATGG 1 cut(s) 195
NdeII GATC 1 cut(s) 250
NlaIII CATG 4 cut(s) 115, 199, 229, 238
NlaIV GGNNCC 3 cut(s) 82, 147, 221
NspI RCATGY 1 cut(s) 115
PciI ACATGT 1 cut(s) 111
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 2 cut(s) 128, 179
PscI ACATGT 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 82, 147, 221
RsaI GTAC 2 cut(s) 19, 167
RsaNI GTAC 2 cut(s) 18, 166
SacII CCGCGG 1 cut(s) 127
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 127, 178
Sau3AI GATC 1 cut(s) 250
ScaI AGTACT 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 263
SetI ASST 2 cut(s) 33, 51
SfaNI GCATC 1 cut(s) 235
Sfr303I CCGCGG 1 cut(s) 127
SgrBI CCGCGG 1 cut(s) 127
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 2 cut(s) 35, 75
SsiI CCGC 2 cut(s) 124, 126
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 219, 280
TaqI TCGA 2 cut(s) 107, 288
TasI AATT 2 cut(s) 35, 75
TatI WGTACW 2 cut(s) 17, 165
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 1 cut(s) 177
XceI RCATGY 1 cut(s) 115
XspI CTAG 1 cut(s) 21
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.