FvH4_6g21120

D-lactate dehydrogenase cytochrome

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
14694170 .. 14702273
8104 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21120.t3

Sequence Viewer

Length: 1680 bp
ATGATGGCCATGTCTTCCTGGTTCTCTCGCCTACGCCACTCCTCCAAGTCCTTACTCACCATCTCCACTCCCCATTTCCTCCGATCATCCTCCACCAACCTCCTTAAAACTTCAACAACAAACTCCGGCAGCTCCAAAACCCCATTTCCGTTCTGGTCGCTCCCAATCGCAGTCGCAGTCTCAGCTGCTGCTGGATCACTCGCTCTCTACCCCCAATCAAATCTCCCGCGCTGTGAACCTCCCAATCCCAATTCTCGCACCGAGTTTGTGGTTAAAGGCTCGCACAAGCCAGTCCCGCAGGAACTTGTGAATGAATTGAAGGCTTTTTGTAAGGATAACATGACAATGGATTATGAGGAGAGGTATAACCATGGCAAACCACTGAACAGCTTTCACAAAGCTGTCAACATTCCTGACCTTGTTGTTTTCGCTCGGTCTGAAGAGGAAGTTTGTAAGATAGTTAAGTTATGCGACAAGCACAAGGTCCCTATTGTACCTTACGGTGGAGCTACATCAATCGAGGGTCACACCTTGTCTCCCCATGGAGGTGTTTGCATTGACATGTCATCGATGAAGAATGTTAAAGCTTTGCATGTTGAAGACATGGATGTCGTTGTTGAACCCGGCATTGGATGGATGGAGCTTAATGAATACCTGGAGCCTTATGGTTTATTCTTTCCCCTGGATCCAGGACCTGGTGCAACAATTGGAGGAATGTGTGCTACACGTTGCTCTGGTTCATTAGCTGTCAGGTATGGAACCATGCGTGATAACGTCATCAGTCTCAAGGCAGTTCTTGCAAATGGAGAGGTAGTGAAGACTGCATCTCGTGCTCGAAAAAGTGCTGCAGGGTATGATTTGACACGCCTGATGATTGGAAGTGAAGGAACTCTGGGTGTAATTACTGAAGTAACTCTACGACTGCAGAAAATTCCCAAATATTCAGTGGTTGCTATGTGTAATTTCCCTTCAATTAAGGATGCAGCAGATGTTGCTATTACTACTATGCTGTCTGGAATACAAGTGTCAAGGGTTGAGCTACTGGATGAGGTTCAAGTGAGGGCTATCAATATTGCTAATGGGAAAAATTTGCCAGAAACTCCAACTTTGATGTTTGAATTTATAGGCACAGAGGCATATTCACGTGAACAAACCCAAATAGTTCAGAGGATTGTGTCTGAACACAATGGCTCAGACTTTGTTTTTGCAGAAGACACCGATGCTAAAAAGGAACTCTGGAAGATCAGGAAGGAGGCACTCTGGGCATGCTTTGCAATGGAACCTGATTTTGAAGCAATGATTTCGGATGTTTGTGTACCTCTGTCATGCCTTGCAGAATTGATATCTAGGTCCAAGCAAGAACTGGATGCATCAGAACTGGTTTGCACGGTTATTGCTCATGCTGGTGATGGGAACTTCCACACAGTGATTCTTTTCGATCCCAACAAAGAAGAACATCGCCGAGAAGCAGAAAGGTTGAACCATTTTATGGTTCATACTGCCTTGTCAATGGAAGGAACATGTACCGGGGAACATGGTGTTGGCACAGGAAAAATGAAGTATCTTGAAGAGGAACTAGGAGCAGAGGCTTTGAAGACCATGAAAAGAATAAAAGTAGCACTGGATCCCAACAACATTATGAATCCAGGAAAGCTCATTCCTTCTCATGTTTGTTTCTAA

Protein Analysis

560

Amino Acids

61.44

Weight (kDa)

6.21

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD-oxidase_C PF02913 57 - 298 6e-72 FAD linked oxidases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 608
AccB7I CCANNNNNTGG 2 cut(s) 695, 1489
AccII CGCG 1 cut(s) 229
AciI CCGC 2 cut(s) 227, 296
AclWI GGATC 6 cut(s) 202, 680, 693, 1433, 1619, 1632
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 3 cut(s) 930, 1087, 1118
AcuI CTGAAG 2 cut(s) 459, 927
AcvI CACGTG 1 cut(s) 1145
AdeI CACNNNGTG 1 cut(s) 1426
AfaI GTAC 3 cut(s) 495, 1317, 1525
AfiI CCNNNNNNNGG 5 cut(s) 503, 545, 629, 695, 1489
AflIII ACRYGT 3 cut(s) 561, 725, 1520
AjnI CCWGG 6 cut(s) 17, 654, 681, 688, 694, 1645
AjuI GAANNNNNNNTTGG 4 cut(s) 612, 644, 1524, 1556
Alw21I GWGCWC 1 cut(s) 835
Alw26I GTCTC 3 cut(s) 184, 540, 788
AlwI GGATC 6 cut(s) 202, 680, 693, 1433, 1619, 1632
AlwNI CAGNNNCTG 2 cut(s) 188, 695
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 5 cut(s) 129, 185, 188, 845, 983
ApoI RAATTY 3 cut(s) 930, 1087, 1118
ArsI GACNNNNNNTTYG 2 cut(s) 1187, 1219
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 3 cut(s) 484, 692, 1350
AsuC2I CCSGG 2 cut(s) 624, 1528
AsuHPI GGTGA 2 cut(s) 49, 1418
AvaII GGWCC 3 cut(s) 484, 692, 1350
BalI TGGCCA 1 cut(s) 8
BamHI GGATCC 2 cut(s) 685, 1624
BarI GAAGNNNNNNTAC 4 cut(s) 900, 932, 952, 984
BauI CACGAG 1 cut(s) 828
BbrPI CACGTG 1 cut(s) 1145
BbsI GAAGAC 5 cut(s) 6, 606, 824, 1218, 1601
Bbv12I GWGCWC 1 cut(s) 835
BbvI GCAGC 5 cut(s) 141, 172, 175, 832, 995
BccI CCATC 4 cut(s) 68, 627, 631, 1403
BcgI CGANNNNNNTGC 2 cut(s) 1284, 1318
BciT130I CCWGG 6 cut(s) 19, 656, 683, 690, 696, 1647
BcnI CCSGG 2 cut(s) 624, 1528
BcoDI GTCTC 3 cut(s) 184, 540, 788
BfaI CTAG 2 cut(s) 1347, 1577
BfmI CTRYAG 2 cut(s) 846, 923
BisI GCNGC 5 cut(s) 130, 186, 189, 846, 984
BlsI GCNGC 5 cut(s) 131, 187, 190, 847, 985
Bme1390I CCNGG 8 cut(s) 19, 624, 656, 683, 690, 696, 1528, 1647
Bme18I GGWCC 3 cut(s) 484, 692, 1350
BmgT120I GGNCC 3 cut(s) 484, 692, 1350
BmiI GGNNCC 6 cut(s) 486, 660, 687, 760, 1281, 1626
BmrFI CCNGG 8 cut(s) 19, 624, 656, 683, 690, 696, 1528, 1647
BmsI GCATC 5 cut(s) 833, 970, 1210, 1357, 1379
BpiI GAAGAC 5 cut(s) 6, 606, 824, 1218, 1601
BpmI CTGGAG 1 cut(s) 677
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 2 cut(s) 624, 1528
Bsa29I ATCGAT 1 cut(s) 569
BsaAI YACGTR 1 cut(s) 1145
BsaJI CCNNGG 4 cut(s) 370, 541, 681, 1527
BsaXI ACNNNNNCTCC 4 cut(s) 520, 550, 798, 828
Bsc4I CCNNNNNNNGG 5 cut(s) 503, 545, 629, 695, 1489
Bse1I ACTGG 5 cut(s) 290, 1047, 1368, 1383, 1626
Bse3DI GCAATG 2 cut(s) 1281, 1302
BseBI CCWGG 6 cut(s) 19, 656, 683, 690, 696, 1647
BseCI ATCGAT 1 cut(s) 569
BseDI CCNNGG 4 cut(s) 370, 541, 681, 1527
BseGI GGATG 8 cut(s) 86, 613, 638, 642, 985, 1051, 1312, 1372
BseLI CCNNNNNNNGG 5 cut(s) 503, 545, 629, 695, 1489
BseMI GCAATG 2 cut(s) 1281, 1302
BseMII CTCAG 2 cut(s) 195, 1206
BseNI ACTGG 5 cut(s) 290, 1047, 1368, 1383, 1626
BseRI GAGGAG 2 cut(s) 31, 371
BseXI GCAGC 5 cut(s) 141, 172, 175, 832, 995
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 835
BsiSI CCGG 3 cut(s) 126, 624, 1527
BslFI GGGAC 2 cut(s) 278, 470
BslI CCNNNNNNNGG 5 cut(s) 503, 545, 629, 695, 1489
BsmAI GTCTC 3 cut(s) 184, 540, 788
BsmFI GGGAC 2 cut(s) 278, 470
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 835
Bsp143I GATC 6 cut(s) 83, 194, 685, 1242, 1438, 1624
Bsp19I CCATGG 2 cut(s) 370, 541
BspACI CCGC 2 cut(s) 227, 296
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 194, 1205
BspDI ATCGAT 1 cut(s) 569
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 6 cut(s) 486, 660, 687, 760, 1281, 1626
BspMAI CTGCAG 2 cut(s) 850, 927
BspPI GGATC 6 cut(s) 202, 680, 693, 1433, 1619, 1632
BsrDI GCAATG 2 cut(s) 1281, 1302
BsrI ACTGG 5 cut(s) 290, 1047, 1368, 1383, 1626
BssECI CCNNGG 4 cut(s) 370, 541, 681, 1527
BssMI GATC 6 cut(s) 83, 194, 685, 1242, 1438, 1624
BssSI CACGAG 1 cut(s) 828
BssT1I CCWWGG 2 cut(s) 370, 541
Bst2BI CACGAG 1 cut(s) 828
Bst2UI CCWGG 6 cut(s) 19, 656, 683, 690, 696, 1647
Bst4CI ACNGT 3 cut(s) 503, 1390, 1426
Bst6I CTCTTC 2 cut(s) 435, 1563
BstAPI GCANNNNNTGC 4 cut(s) 797, 830, 992, 1271
BstBAI YACGTR 1 cut(s) 1145
BstC8I GCNNGC 2 cut(s) 281, 1267
BstDEI CTNAG 2 cut(s) 181, 1192
BstDSI CCRYGG 2 cut(s) 370, 541
BstF5I GGATG 8 cut(s) 86, 613, 638, 642, 985, 1051, 1312, 1372
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 6 cut(s) 86, 197, 688, 1245, 1441, 1627
BstMAI GTCTC 3 cut(s) 184, 540, 788
BstMBI GATC 6 cut(s) 83, 194, 685, 1242, 1438, 1624
BstMWI GCNNNNNNNGC 7 cut(s) 182, 295, 797, 830, 992, 1262, 1271
BstNI CCWGG 6 cut(s) 19, 656, 683, 690, 696, 1647
BstNSI RCATGY 4 cut(s) 565, 596, 1269, 1524
BstSCI CCNGG 8 cut(s) 17, 622, 654, 681, 688, 694, 1526, 1645
BstSFI CTRYAG 2 cut(s) 846, 923
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 5 cut(s) 141, 172, 175, 832, 995
BstV2I GAAGAC 5 cut(s) 6, 606, 824, 1218, 1601
BstX2I RGATCY 2 cut(s) 685, 1624
BstYI RGATCY 2 cut(s) 685, 1624
Bsu15I ATCGAT 1 cut(s) 569
BsuRI GGCC 1 cut(s) 8
BsuTUI ATCGAT 1 cut(s) 569
BtgI CCRYGG 2 cut(s) 370, 541
BtgZI GCGATG 1 cut(s) 1442
BtsCI GGATG 8 cut(s) 86, 613, 638, 642, 985, 1051, 1312, 1372
BtsIMutI CAGTG 4 cut(s) 380, 951, 1431, 1619
Cac8I GCNNGC 2 cut(s) 281, 1267
CaiI CAGNNNCTG 2 cut(s) 188, 695
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 3 cut(s) 484, 692, 1350
ClaI ATCGAT 1 cut(s) 569
CsiI ACCWGGT 1 cut(s) 694
Csp6I GTAC 3 cut(s) 494, 1316, 1524
CviQI GTAC 3 cut(s) 494, 1316, 1524
DdeI CTNAG 2 cut(s) 181, 1192
DpnI GATC 6 cut(s) 85, 196, 687, 1244, 1440, 1626
DpnII GATC 6 cut(s) 83, 194, 685, 1242, 1438, 1624
DraIII CACNNNGTG 1 cut(s) 1426
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 435, 1563
EarI CTCTTC 2 cut(s) 435, 1563
Eco130I CCWWGG 2 cut(s) 370, 541
Eco32I GATATC 1 cut(s) 1344
Eco47I GGWCC 3 cut(s) 484, 692, 1350
Eco57I CTGAAG 2 cut(s) 459, 927
Eco72I CACGTG 1 cut(s) 1145
EcoO109I RGGNCCY 2 cut(s) 484, 692
EcoRII CCWGG 6 cut(s) 17, 654, 681, 688, 694, 1645
EcoRV GATATC 1 cut(s) 1344
EcoT14I CCWWGG 2 cut(s) 370, 541
EcoT22I ATGCAT 1 cut(s) 1372
ErhI CCWWGG 2 cut(s) 370, 541
FaqI GGGAC 2 cut(s) 278, 470
FauI CCCGC 2 cut(s) 234, 303
Fnu4HI GCNGC 5 cut(s) 130, 186, 189, 846, 984
FokI GGATG 8 cut(s) 73, 620, 645, 649, 992, 1058, 1319, 1379
Fsp4HI GCNGC 5 cut(s) 130, 186, 189, 846, 984
FspBI CTAG 2 cut(s) 1347, 1577
GlaI GCGC 1 cut(s) 230
GluI GCNGC 5 cut(s) 130, 186, 189, 846, 984
GsuI CTGGAG 1 cut(s) 677
HaeIII GGCC 1 cut(s) 8
HapII CCGG 3 cut(s) 126, 624, 1527
HhaI GCGC 1 cut(s) 231
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 2 cut(s) 1429, 1642
HpaII CCGG 3 cut(s) 126, 624, 1527
HphI GGTGA 2 cut(s) 49, 1418
Hpy166II GTNNAC 4 cut(s) 236, 406, 1148, 1316
Hpy188I TCNGA 7 cut(s) 83, 439, 1167, 1180, 1195, 1306, 1375
Hpy188III TCNNGA 5 cut(s) 413, 1014, 1237, 1246, 1565
Hpy8I GTNNAC 4 cut(s) 236, 406, 1148, 1316
HpyAV CCTTC 6 cut(s) 313, 878, 978, 1243, 1508, 1671
HpyCH4III ACNGT 3 cut(s) 503, 1390, 1426
HpyCH4IV ACGT 3 cut(s) 727, 774, 1144
HpyF10VI GCNNNNNNNGC 7 cut(s) 182, 295, 797, 830, 992, 1262, 1271
HpyF3I CTNAG 2 cut(s) 181, 1192
HpySE526I ACGT 3 cut(s) 727, 774, 1144
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 6 cut(s) 83, 194, 685, 1242, 1438, 1624
LmnI GCTCC 6 cut(s) 137, 165, 506, 640, 658, 1580
Lsp1109I GCAGC 5 cut(s) 141, 172, 175, 832, 995
LweI GCATC 5 cut(s) 833, 970, 1210, 1357, 1379
MabI ACCWGGT 1 cut(s) 694
MaeI CTAG 2 cut(s) 1347, 1577
MaeII ACGT 3 cut(s) 727, 774, 1144
MaeIII GTNAC 2 cut(s) 524, 910
MalI GATC 6 cut(s) 85, 196, 687, 1244, 1440, 1626
MboI GATC 6 cut(s) 83, 194, 685, 1242, 1438, 1624
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 2 cut(s) 685, 1624
MhlI GDGCHC 1 cut(s) 835
MlsI TGGCCA 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 1127
Mox20I TGGCCA 1 cut(s) 8
Mph1103I ATGCAT 1 cut(s) 1372
MscI TGGCCA 1 cut(s) 8
MseI TTAA 6 cut(s) 105, 273, 462, 582, 645, 975
MslI CAYNNNNRTG 4 cut(s) 344, 546, 560, 1404
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 3 cut(s) 126, 624, 1527
MspR9I CCNGG 8 cut(s) 19, 624, 656, 683, 690, 696, 1528, 1647
MunI CAATTG 1 cut(s) 705
MvaI CCWGG 6 cut(s) 19, 656, 683, 690, 696, 1647
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 7 cut(s) 182, 295, 797, 830, 992, 1262, 1271
NciI CCSGG 2 cut(s) 624, 1528
NcoI CCATGG 2 cut(s) 370, 541
NdeII GATC 6 cut(s) 83, 194, 685, 1242, 1438, 1624
NlaIV GGNNCC 6 cut(s) 486, 660, 687, 760, 1281, 1626
NmeAIII GCCGAG 1 cut(s) 1487
NmuCI GTSAC 1 cut(s) 524
NsiI ATGCAT 1 cut(s) 1372
NspI RCATGY 4 cut(s) 565, 596, 1269, 1524
PaeI GCATGC 1 cut(s) 1269
PciI ACATGT 2 cut(s) 561, 1520
PfeI GAWTC 2 cut(s) 1429, 1642
PflMI CCANNNNNTGG 2 cut(s) 695, 1489
PfoI TCCNGGA 2 cut(s) 688, 1645
PkrI GCNGC 5 cut(s) 131, 187, 190, 847, 985
PmaCI CACGTG 1 cut(s) 1145
PmlI CACGTG 1 cut(s) 1145
Ppu21I YACGTR 1 cut(s) 1145
PpuMI RGGWCCY 2 cut(s) 484, 692
PscI ACATGT 2 cut(s) 561, 1520
Psp5II RGGWCCY 2 cut(s) 484, 692
Psp6I CCWGG 6 cut(s) 17, 654, 681, 688, 694, 1645
PspCI CACGTG 1 cut(s) 1145
PspGI CCWGG 6 cut(s) 17, 654, 681, 688, 694, 1645
PspN4I GGNNCC 6 cut(s) 486, 660, 687, 760, 1281, 1626
PspPI GGNCC 3 cut(s) 484, 692, 1350
PspPPI RGGWCCY 2 cut(s) 484, 692
PstI CTGCAG 2 cut(s) 850, 927
PstNI CAGNNNCTG 2 cut(s) 188, 695
PsuI RGATCY 2 cut(s) 685, 1624
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 3 cut(s) 495, 1317, 1525
RsaNI GTAC 3 cut(s) 494, 1316, 1524
RseI CAYNNNNRTG 4 cut(s) 344, 546, 560, 1404
SaqAI TTAA 6 cut(s) 105, 273, 462, 582, 645, 975
SatI GCNGC 5 cut(s) 130, 186, 189, 846, 984
Sau3AI GATC 6 cut(s) 83, 194, 685, 1242, 1438, 1624
Sau96I GGNCC 3 cut(s) 484, 692, 1350
ScrFI CCNGG 8 cut(s) 19, 624, 656, 683, 690, 696, 1528, 1647
SduI GDGCHC 1 cut(s) 835
SexAI ACCWGGT 1 cut(s) 694
SfaNI GCATC 5 cut(s) 833, 970, 1210, 1357, 1379
SfcI CTRYAG 2 cut(s) 846, 923
SinI GGWCC 3 cut(s) 484, 692, 1350
SmiMI CAYNNNNRTG 4 cut(s) 344, 546, 560, 1404
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
SphI GCATGC 1 cut(s) 1269
SsiI CCGC 2 cut(s) 227, 296
SspI AATATT 2 cut(s) 941, 1072
SspMI CTAG 2 cut(s) 1347, 1577
StyD4I CCNGG 8 cut(s) 17, 622, 654, 681, 688, 694, 1526, 1645
StyI CCWWGG 2 cut(s) 370, 541
TaaI ACNGT 3 cut(s) 503, 1390, 1426
TaiI ACGT 3 cut(s) 730, 777, 1147
TaqI TCGA 4 cut(s) 519, 569, 835, 1437
TaqII GACCGA 1 cut(s) 423
TfiI GAWTC 2 cut(s) 1429, 1642
Tru1I TTAA 6 cut(s) 105, 273, 462, 582, 645, 975
Tru9I TTAA 6 cut(s) 105, 273, 462, 582, 645, 975
TscAI CASTG 4 cut(s) 387, 951, 1431, 1626
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 5 cut(s) 129, 185, 188, 845, 983
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 8 cut(s) 327, 587, 663, 729, 1484, 1571, 1616, 1655
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 4 cut(s) 387, 951, 1431, 1626
Van91I CCANNNNNTGG 2 cut(s) 695, 1489
VpaK11BI GGWCC 3 cut(s) 484, 692, 1350
XapI RAATTY 3 cut(s) 930, 1087, 1118
XceI RCATGY 4 cut(s) 565, 596, 1269, 1524
XcmI CCANNNNNNNNNTGG 3 cut(s) 150, 943, 1360
XspI CTAG 2 cut(s) 1347, 1577
Zsp2I ATGCAT 1 cut(s) 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.