Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003659

Physical Location & Seq

Genomic Coordinates Forward (+)

26329893 .. 26331426

Gene Structure 1534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCGTGATAATGTCATCAGTCTCAAGGCAGTTCTTGCAAATGGAGAGGTGGTGAAGACTGCATCTCGTGCTCGAAAGAGTGTGCAGCAGGAGTTTGCATGCCATAGGTATGATTTGACCCGCCTGATGATTGGAAGTGAAGGAACTCTTGGTGTAATTACTGAAGTAACTCTACGACTGCAGAAAATTCCCCAATATTCAGTGAAATTGCAGGTTGCTATGTGTAATTTCCCATCAATTAAGGATGCGGCAGATGTTGCTATTGCTACTATGCTGTCTGGAATACAAGTGTCAAGGGTTGAGCTACTGGATGAAGTTCAAGTGAGGGCTATCAATATTGCTAATGGGAAGAATTTGCCAGAAACACCAACTTTGATGTTTGAGTTTATAGGCACAGGTCAGATAGGGCCTCTTCTCTTTCCTCCGGAATGCCAGGCCAATGCCAGTGGAATATCAACAGTATTGTTGAATACTGGATCAAAATCAAGGAAAAATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003973 GO:0004457 GO:0004458 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0008144 GO:0008150 GO:0008152 GO:0008720 GO:0008891 GO:0009056 GO:0009438 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016898 GO:0016899 GO:0017076 GO:0019154 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042180 GO:0042182 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046185 GO:0048037 GO:0050660 GO:0050662 GO:0051596 GO:0055114 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

FAD-oxidase_C FAD_binding_4

Protein Analysis

166

Amino Acids

17.98

Weight (kDa)

9.12

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD-oxidase_C	PF02913	71 - 133	9.1e-08	FAD linked oxidases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06580
fragaria_vesca	FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120
malus_domestica	MD12G1046600.v1.1 MD12G1046700.v1.1 MD14G1045600.v1.1
prunus_persica	Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1
pyrus_communis	pycom12g04020 pycom12g04030
rosa_chinensis	RchiOBHm_Chr3g0477531
rosa_laevigata	RLG00000023711
rosa_multiflora	Rmu_co8386717.1_g000001 Rmu_sc0000775.1_g000016
rosa_roxburghii	Rroxscaffold_6G00403860 Rroxscaffold_6G00403870 Rroxscaffold_6G00404560
rosa_rugosa	Rorug03G0161800
rosa_samantha	Rh3AG211800 Rh3BG245600 Rh3CG239200 Rh3DG238700
rosa_wichuraiana	Rw3G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	2 cut(s)	121, 248
AclWI	GGATC	1 cut(s)	484
AcsI	RAATTY	2 cut(s)	186, 352
AcuI	CTGAAG	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	320, 469
AjnI	CCWGG	1 cut(s)	432
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	484
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	2 cut(s)	407, 435
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	2 cut(s)	186, 352
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	64
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
BauI	CACGAG	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	86, 249
BlsI	GCNGC	2 cut(s)	87, 250
Bme1390I	CCNGG	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	71, 235
BpiI	GAAGAC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	481
BsaWI	WCCGGW	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bse1I	ACTGG	3 cut(s)	312, 444, 478
Bse8I	GATNNNNATC	1 cut(s)	481
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	434
BseGI	GGATG	2 cut(s)	250, 316
BseJI	GATNNNNATC	1 cut(s)	481
BseNI	ACTGG	3 cut(s)	312, 444, 478
BseXI	GCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	409, 437
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	425
BsmAI	GTCTC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	409, 437
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	1 cut(s)	476
BspACI	CCGC	2 cut(s)	121, 248
BspANI	GGCC	2 cut(s)	409, 437
BspEI	TCCGGA	1 cut(s)	424
BspMAI	CTGCAG	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	484
BsrI	ACTGG	3 cut(s)	312, 444, 478
BssMI	GATC	1 cut(s)	476
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	417
BstAPI	GCANNNNNTGC	3 cut(s)	35, 68, 257
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	250, 316
BstKTI	GATC	1 cut(s)	479
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	476
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 68, 257
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	409, 437
BtsCI	GGATG	2 cut(s)	250, 316
BtsIMutI	CAGTG	2 cut(s)	207, 451
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	407
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	4 cut(s)	304, 329, 409, 437
CviKI_1	RGCY	4 cut(s)	304, 329, 409, 437
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	1 cut(s)	478
DpnII	GATC	1 cut(s)	476
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	432
FaeI	CATG	1 cut(s)	102
FaiI	YATR	6 cut(s)	100, 105, 111, 221, 272, 389
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	1 cut(s)	98
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	86, 249
FokI	GGATG	2 cut(s)	257, 323
Fsp4HI	GCNGC	2 cut(s)	86, 249
GluI	GCNGC	2 cut(s)	86, 249
HaeIII	GGCC	2 cut(s)	409, 437
HapII	CCGG	1 cut(s)	425
Hin1II	CATG	1 cut(s)	102
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	2 cut(s)	279, 425
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	6 cut(s)	38, 62, 85, 98, 181, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 68, 257
HpyF3I	CTNAG	1 cut(s)	498
Hsp92II	CATG	1 cut(s)	102
Kpn2I	TCCGGA	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	476
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	71, 235
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	478
MboI	GATC	1 cut(s)	476
MboII	GAAGA	3 cut(s)	67, 361, 404
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	6 cut(s)	156, 186, 206, 226, 237, 352
MnlI	CCTC	4 cut(s)	40, 318, 420, 432
MroI	TCCGGA	1 cut(s)	424
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	3 cut(s)	35, 68, 257
NdeII	GATC	1 cut(s)	476
NlaIII	CATG	1 cut(s)	102
NspI	RCATGY	1 cut(s)	102
PaeI	GCATGC	1 cut(s)	102
PctI	GAATGC	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	87, 250
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	86, 249
Sau3AI	GATC	1 cut(s)	476
Sau96I	GGNCC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	5 cut(s)	51, 110, 216, 306, 400
SfaNI	GCATC	2 cut(s)	71, 235
SfcI	CTRYAG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SphI	GCATGC	1 cut(s)	102
Sse9I	AATT	6 cut(s)	156, 186, 206, 226, 237, 352
SsiI	CCGC	2 cut(s)	121, 248
SspI	AATATT	2 cut(s)	197, 337
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	1 cut(s)	73
TasI	AATT	6 cut(s)	156, 186, 206, 226, 237, 352
TauI	GCSGC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	207, 451
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	207, 451
XapI	RAATTY	2 cut(s)	186, 352
XceI	RCATGY	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.