RLG00000023711

D-lactate dehydrogenase cytochrome

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
27338763 .. 27346794
8032 bp
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UTR
Exon/CDS
Intron
RLM00000023711

Sequence Viewer

Length: 1665 bp
ATGTCTTCCTGGTTCTCTCGCTTACGCTATTCCTCAAAGTCCTTGTTCAACTCTACCCCGCCTCTCCTCCGATCCTCCTTCTCCACCAAGCTCATTACAACTCCAACACCAACAGCAAACTCCGGCAGCTCAAGACACCCATTTCCGTTTTGGTCTCTTCCAATCGCTGTAGCTGCTGGATCACTCGCCCTCTATCCCCAATCAAACCCATCACTCTGCCAAGCTCCCAATGTCAATGCTCGAACCGAGTTTGTGGTCAAAGGCTCACACAGGGATGTCCCACAAGAACTTATTAATGAATTGAAGGCTGTTTGTAAGGATAACATGACAGTGGATTATGAGGAGAGGTATAACCATGGCAAACCACAAAACAGCTTTCACAAAGCTGTCAACATTCCTGACCTGGTTGTTTTCGCGCGGTCTGAAGAGGAAGTTTGTAAGATAGTCAAGCTATGTGACAAGTACAAGGTCCCCATTGTGCCATATGGTGGAGCGACATCAATCGAGGGTCACACCTTGTCTCCCCATGGAGGTGTTTGCATTGACATGTCATCAATGAAGAATGTCAAAGCTTTACATGTTGAGGACATGGATGTCATTGTTGAACCTGGCATTGGATGGATGGAGCTTAATGAATACTTGGAGCCTTATGGTTTATTCTTTCCCCTGGATCCAGGACCTGGTGCAACAATTGGAGGAATGTGTGCTACACGTTGCTCTGGTTCGTTAGCTGTTAGGTATGGAACCATGCGTGATAATGTCATCAGTCTCAAGGCAGTTCTTGCAAATGGAGAGGTGGTGAAGACTGCATCTCGTGCTCGAAAGAGTGCAGCAGGGTATGATTTGACACGCCTGATGATTGGAAGTGAAGGAACTCTTGGTGTAATTACTGAAGTGACTCTACGACTGCAGAAAATTCCCCAATATTCAGTGGTTGCTATGTGTAATTTCCCTTCAATTAAGGATGCGGCAGATGTTGCTATTGCTACTATGCTGTCTGGAATACAAGTGTCAAGGGTTGAGCTACTGGATGAAGTTCAAGTGAGGGCTATCAATATTGCTAATGGGAAGAATTTGCCAGAAACACCAACTTTGATGTTTGAGTTTATAGGCACAGAGGCCTATTCACGTGAACAAACCCAAATAGTTCAGAAGATTGTGTCTGAACACAATGGCTCAGACTTTGTTTTTGCAGAAGACCCTGATACTAAAAAGGAACTCTGGGAGATAAGGAAGGAAGCACTCTGGGCATGCTTTGCAATGGAACCTGATTTTGAGGCAATGATTTCGGATGTTTGTGTACCTCTATCATGCCTTGCAGAATTGATATCAAGGTCCAAGCAAGAATTGGATGCATCAGAACTGGTTTGCACAGTTATTGCTCATGCCGGTGATGGGAACTTCCACACAGTGATTCTTTTCGATCCTAACAAAGAAGAACATCGACGAGAAGCAGAGAGATTAAACCATTTTATGGTTCATACTGCCTTGTCAATGGAAGGAACATGTACCGGGGAACATGGTGTTGGCACAGGAAAAATGAAGTATCTTGAAAAAGAATTAGGAGCAGAGGCTTTGAAGACCATGAAAAGAATAAAAGTAGCATTGGATCCCAACAACATCATGAATCCAGGAAAGCTTATTCCTTCTCATGTTTGTTTCTAA

Protein Analysis

555

Amino Acids

60.94

Weight (kDa)

5.97

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 133 - 269 5e-37 FAD binding domain
FAD-oxidase_C PF02913 306 - 547 2.5e-71 FAD linked oxidases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
AccB7I CCANNNNNTGG 3 cut(s) 488, 680, 1474
AccII CGCG 2 cut(s) 416, 418
AciI CCGC 3 cut(s) 59, 418, 968
AclWI GGATC 7 cut(s) 66, 187, 665, 678, 1418, 1604, 1617
AcsI RAATTY 2 cut(s) 915, 1072
AcuI CTGAAG 2 cut(s) 444, 912
AcvI CACGTG 1 cut(s) 1130
AdeI CACNNNGTG 1 cut(s) 1411
AfaI GTAC 3 cut(s) 464, 1302, 1510
AfiI CCNNNNNNNGG 6 cut(s) 488, 530, 614, 680, 1395, 1474
AflIII ACRYGT 4 cut(s) 546, 577, 710, 1505
AgsI TTSAA 7 cut(s) 49, 304, 605, 957, 1040, 1553, 1579
AjnI CCWGG 7 cut(s) 8, 402, 607, 666, 673, 679, 1630
AjuI GAANNNNNNNTTGG 6 cut(s) 597, 629, 861, 893, 1509, 1541
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 3 cut(s) 159, 525, 773
AlwI GGATC 7 cut(s) 66, 187, 665, 678, 1418, 1604, 1617
AlwNI CAGNNNCTG 1 cut(s) 680
AoxI GGCC 1 cut(s) 1119
ApeKI GCWGC 3 cut(s) 126, 173, 830
ApoI RAATTY 2 cut(s) 915, 1072
ArsI GACNNNNNNTTYG 2 cut(s) 1172, 1204
AseI ATTAAT 1 cut(s) 294
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 3 cut(s) 469, 677, 1335
AsuC2I CCSGG 1 cut(s) 1513
AsuHPI GGTGA 2 cut(s) 811, 1403
AvaII GGWCC 3 cut(s) 469, 677, 1335
BamHI GGATCC 2 cut(s) 670, 1609
BarI GAAGNNNNNNTAC 4 cut(s) 885, 917, 937, 969
BauI CACGAG 1 cut(s) 813
BbrPI CACGTG 1 cut(s) 1130
BbsI GAAGAC 3 cut(s) 809, 1203, 1586
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 3 cut(s) 138, 160, 842
BccI CCATC 4 cut(s) 217, 612, 616, 1388
BcgI CGANNNNNNTGC 2 cut(s) 1269, 1303
BciT130I CCWGG 7 cut(s) 10, 404, 609, 668, 675, 681, 1632
BcnI CCSGG 1 cut(s) 1513
BcoDI GTCTC 3 cut(s) 159, 525, 773
BfmI CTRYAG 2 cut(s) 168, 908
BisI GCNGC 4 cut(s) 127, 174, 831, 969
BlsI GCNGC 4 cut(s) 128, 175, 832, 970
Bme1390I CCNGG 8 cut(s) 10, 404, 609, 668, 675, 681, 1513, 1632
Bme18I GGWCC 3 cut(s) 469, 677, 1335
BmgT120I GGNCC 3 cut(s) 469, 677, 1335
BmiI GGNNCC 6 cut(s) 471, 645, 672, 745, 1266, 1611
BmrFI CCNGG 8 cut(s) 10, 404, 609, 668, 675, 681, 1513, 1632
BmsI GCATC 4 cut(s) 818, 955, 1342, 1364
BpiI GAAGAC 3 cut(s) 809, 1203, 1586
BpuEI CTTGAG 2 cut(s) 115, 755
BpuMI CCSGG 1 cut(s) 1513
BsaAI YACGTR 1 cut(s) 1130
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 4 cut(s) 355, 526, 666, 1512
BsaXI ACNNNNNCTCC 4 cut(s) 505, 535, 783, 813
Bsc4I CCNNNNNNNGG 6 cut(s) 488, 530, 614, 680, 1395, 1474
Bse118I RCCGGY 1 cut(s) 1388
Bse1I ACTGG 2 cut(s) 1032, 1368
Bse3DI GCAATG 2 cut(s) 1266, 1287
BseBI CCWGG 7 cut(s) 10, 404, 609, 668, 675, 681, 1632
BseDI CCNNGG 4 cut(s) 355, 526, 666, 1512
BseGI GGATG 8 cut(s) 280, 598, 623, 627, 970, 1036, 1297, 1357
BseLI CCNNNNNNNGG 6 cut(s) 488, 530, 614, 680, 1395, 1474
BseMI GCAATG 2 cut(s) 1266, 1287
BseMII CTCAG 1 cut(s) 1191
BseNI ACTGG 2 cut(s) 1032, 1368
BseRI GAGGAG 2 cut(s) 56, 356
BseXI GCAGC 3 cut(s) 138, 160, 842
BsgI GTGCAG 1 cut(s) 849
Bsh1236I CGCG 2 cut(s) 416, 418
BshFI GGCC 1 cut(s) 1121
BsiHKAI GWGCWC 1 cut(s) 820
BsiSI CCGG 3 cut(s) 123, 1389, 1512
BslFI GGGAC 2 cut(s) 263, 455
BslI CCNNNNNNNGG 6 cut(s) 488, 530, 614, 680, 1395, 1474
BsmAI GTCTC 3 cut(s) 159, 525, 773
BsmFI GGGAC 2 cut(s) 263, 455
BsnI GGCC 1 cut(s) 1121
Bso31I GGTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 820
Bsp143I GATC 5 cut(s) 71, 179, 670, 1423, 1609
Bsp19I CCATGG 2 cut(s) 355, 526
BspACI CCGC 3 cut(s) 59, 418, 968
BspANI GGCC 1 cut(s) 1121
BspCNI CTCAG 1 cut(s) 1190
BspFNI CGCG 2 cut(s) 416, 418
BspHI TCATGA 1 cut(s) 1623
BspLI GGNNCC 6 cut(s) 471, 645, 672, 745, 1266, 1611
BspMAI CTGCAG 1 cut(s) 912
BspPI GGATC 7 cut(s) 66, 187, 665, 678, 1418, 1604, 1617
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 1266, 1287
BsrFI RCCGGY 1 cut(s) 1388
BsrI ACTGG 2 cut(s) 1032, 1368
BssAI RCCGGY 1 cut(s) 1388
BssECI CCNNGG 4 cut(s) 355, 526, 666, 1512
BssMI GATC 5 cut(s) 71, 179, 670, 1423, 1609
BssSI CACGAG 1 cut(s) 813
BssT1I CCWWGG 2 cut(s) 355, 526
Bst2BI CACGAG 1 cut(s) 813
Bst2UI CCWGG 7 cut(s) 10, 404, 609, 668, 675, 681, 1632
Bst4CI ACNGT 3 cut(s) 331, 1375, 1411
Bst6I CTCTTC 2 cut(s) 162, 420
BstAPI GCANNNNNTGC 4 cut(s) 782, 815, 977, 1256
BstBAI YACGTR 1 cut(s) 1130
BstC8I GCNNGC 1 cut(s) 1252
BstDEI CTNAG 1 cut(s) 1177
BstDSI CCRYGG 2 cut(s) 355, 526
BstF5I GGATG 8 cut(s) 280, 598, 623, 627, 970, 1036, 1297, 1357
BstFNI CGCG 2 cut(s) 416, 418
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 5 cut(s) 74, 182, 673, 1426, 1612
BstMAI GTCTC 3 cut(s) 159, 525, 773
BstMBI GATC 5 cut(s) 71, 179, 670, 1423, 1609
BstMWI GCNNNNNNNGC 6 cut(s) 173, 782, 815, 977, 1247, 1256
BstNI CCWGG 7 cut(s) 10, 404, 609, 668, 675, 681, 1632
BstNSI RCATGY 4 cut(s) 550, 581, 1254, 1509
BstSCI CCNGG 8 cut(s) 8, 402, 607, 666, 673, 679, 1511, 1630
BstSFI CTRYAG 2 cut(s) 168, 908
BstUI CGCG 2 cut(s) 416, 418
BstV1I GCAGC 3 cut(s) 138, 160, 842
BstV2I GAAGAC 3 cut(s) 809, 1203, 1586
BstX2I RGATCY 2 cut(s) 670, 1609
BstYI RGATCY 2 cut(s) 670, 1609
BsuRI GGCC 1 cut(s) 1121
BtgI CCRYGG 2 cut(s) 355, 526
BtsCI GGATG 8 cut(s) 280, 598, 623, 627, 970, 1036, 1297, 1357
BtsIMutI CAGTG 3 cut(s) 336, 936, 1416
Cac8I GCNNGC 1 cut(s) 1252
CaiI CAGNNNCTG 1 cut(s) 680
CciI TCATGA 1 cut(s) 1623
CfoI GCGC 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 1388
Cfr13I GGNCC 3 cut(s) 469, 677, 1335
CsiI ACCWGGT 2 cut(s) 402, 679
Csp6I GTAC 3 cut(s) 463, 1301, 1509
CviQI GTAC 3 cut(s) 463, 1301, 1509
DdeI CTNAG 1 cut(s) 1177
DpnI GATC 5 cut(s) 73, 181, 672, 1425, 1611
DpnII GATC 5 cut(s) 71, 179, 670, 1423, 1609
DraIII CACNNNGTG 1 cut(s) 1411
DrdI GACNNNNNNGTC 1 cut(s) 593
DseDI GACNNNNNNGTC 1 cut(s) 593
Eam1104I CTCTTC 2 cut(s) 162, 420
EarI CTCTTC 2 cut(s) 162, 420
Eco130I CCWWGG 2 cut(s) 355, 526
Eco147I AGGCCT 1 cut(s) 1121
Eco31I GGTCTC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 1329
Eco47I GGWCC 3 cut(s) 469, 677, 1335
Eco57I CTGAAG 2 cut(s) 444, 912
Eco72I CACGTG 1 cut(s) 1130
EcoO109I RGGNCCY 2 cut(s) 469, 677
EcoRII CCWGG 7 cut(s) 8, 402, 607, 666, 673, 679, 1630
EcoRV GATATC 1 cut(s) 1329
EcoT14I CCWWGG 2 cut(s) 355, 526
EcoT22I ATGCAT 1 cut(s) 1357
ErhI CCWWGG 2 cut(s) 355, 526
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FaqI GGGAC 2 cut(s) 263, 455
FauI CCCGC 1 cut(s) 66
FauNDI CATATG 1 cut(s) 484
Fnu4HI GCNGC 4 cut(s) 127, 174, 831, 969
FokI GGATG 8 cut(s) 287, 605, 630, 634, 977, 1043, 1304, 1364
Fsp4HI GCNGC 4 cut(s) 127, 174, 831, 969
GlaI GCGC 1 cut(s) 417
GluI GCNGC 4 cut(s) 127, 174, 831, 969
HaeIII GGCC 1 cut(s) 1121
HapII CCGG 3 cut(s) 123, 1389, 1512
HhaI GCGC 1 cut(s) 418
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 2 cut(s) 570, 1637
HinfI GANTC 3 cut(s) 898, 1414, 1627
HpaII CCGG 3 cut(s) 123, 1389, 1512
HphI GGTGA 2 cut(s) 811, 1403
Hpy166II GTNNAC 3 cut(s) 391, 1133, 1301
Hpy188I TCNGA 7 cut(s) 71, 424, 1152, 1165, 1180, 1291, 1360
Hpy188III TCNNGA 5 cut(s) 132, 398, 999, 1550, 1624
Hpy8I GTNNAC 3 cut(s) 391, 1133, 1301
Hpy99I CGWCG 1 cut(s) 1449
HpyAV CCTTC 7 cut(s) 88, 298, 863, 963, 1228, 1493, 1656
HpyCH4III ACNGT 3 cut(s) 331, 1375, 1411
HpyCH4IV ACGT 2 cut(s) 712, 1129
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 782, 815, 977, 1247, 1256
HpyF3I CTNAG 1 cut(s) 1177
HpySE526I ACGT 2 cut(s) 712, 1129
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 5 cut(s) 71, 179, 670, 1423, 1609
LmnI GCTCC 5 cut(s) 229, 491, 625, 643, 1565
Lsp1109I GCAGC 3 cut(s) 138, 160, 842
LweI GCATC 4 cut(s) 818, 955, 1342, 1364
MabI ACCWGGT 2 cut(s) 402, 679
MaeII ACGT 2 cut(s) 712, 1129
MaeIII GTNAC 3 cut(s) 455, 509, 895
MalI GATC 5 cut(s) 73, 181, 672, 1425, 1611
MboI GATC 5 cut(s) 71, 179, 670, 1423, 1609
MboII GAAGA 9 cut(s) 149, 437, 571, 814, 1081, 1165, 1208, 1448, 1591
MfeI CAATTG 1 cut(s) 690
MflI RGATCY 2 cut(s) 670, 1609
MhlI GDGCHC 1 cut(s) 820
MlyI GAGTC 1 cut(s) 892
MmeI TCCRAC 1 cut(s) 128
Mph1103I ATGCAT 1 cut(s) 1357
MseI TTAA 4 cut(s) 294, 630, 960, 1463
MslI CAYNNNNRTG 5 cut(s) 273, 329, 531, 545, 1389
MspI CCGG 3 cut(s) 123, 1389, 1512
MspR9I CCNGG 8 cut(s) 10, 404, 609, 668, 675, 681, 1513, 1632
MunI CAATTG 1 cut(s) 690
MvaI CCWGG 7 cut(s) 10, 404, 609, 668, 675, 681, 1632
MvnI CGCG 2 cut(s) 416, 418
MwoI GCNNNNNNNGC 6 cut(s) 173, 782, 815, 977, 1247, 1256
NciI CCSGG 1 cut(s) 1513
NcoI CCATGG 2 cut(s) 355, 526
NdeI CATATG 1 cut(s) 484
NdeII GATC 5 cut(s) 71, 179, 670, 1423, 1609
NlaIV GGNNCC 6 cut(s) 471, 645, 672, 745, 1266, 1611
NmuCI GTSAC 3 cut(s) 455, 509, 895
NsiI ATGCAT 1 cut(s) 1357
NspI RCATGY 4 cut(s) 550, 581, 1254, 1509
PaeI GCATGC 1 cut(s) 1254
PagI TCATGA 1 cut(s) 1623
PceI AGGCCT 1 cut(s) 1121
PciI ACATGT 3 cut(s) 546, 577, 1505
PfeI GAWTC 2 cut(s) 1414, 1627
PflMI CCANNNNNTGG 3 cut(s) 488, 680, 1474
PfoI TCCNGGA 2 cut(s) 673, 1630
PkrI GCNGC 4 cut(s) 128, 175, 832, 970
PleI GAGTC 1 cut(s) 892
PmaCI CACGTG 1 cut(s) 1130
PmlI CACGTG 1 cut(s) 1130
PpsI GAGTC 1 cut(s) 892
Ppu21I YACGTR 1 cut(s) 1130
PpuMI RGGWCCY 2 cut(s) 469, 677
PscI ACATGT 3 cut(s) 546, 577, 1505
PshBI ATTAAT 1 cut(s) 294
Psp5II RGGWCCY 2 cut(s) 469, 677
Psp6I CCWGG 7 cut(s) 8, 402, 607, 666, 673, 679, 1630
PspCI CACGTG 1 cut(s) 1130
PspGI CCWGG 7 cut(s) 8, 402, 607, 666, 673, 679, 1630
PspN4I GGNNCC 6 cut(s) 471, 645, 672, 745, 1266, 1611
PspPI GGNCC 3 cut(s) 469, 677, 1335
PspPPI RGGWCCY 2 cut(s) 469, 677
PstI CTGCAG 1 cut(s) 912
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 2 cut(s) 670, 1609
RsaI GTAC 3 cut(s) 464, 1302, 1510
RsaNI GTAC 3 cut(s) 463, 1301, 1509
RseI CAYNNNNRTG 5 cut(s) 273, 329, 531, 545, 1389
SaqAI TTAA 4 cut(s) 294, 630, 960, 1463
SatI GCNGC 4 cut(s) 127, 174, 831, 969
Sau3AI GATC 5 cut(s) 71, 179, 670, 1423, 1609
Sau96I GGNCC 3 cut(s) 469, 677, 1335
SchI GAGTC 1 cut(s) 892
ScrFI CCNGG 8 cut(s) 10, 404, 609, 668, 675, 681, 1513, 1632
SduI GDGCHC 1 cut(s) 820
SexAI ACCWGGT 2 cut(s) 402, 679
SfaNI GCATC 4 cut(s) 818, 955, 1342, 1364
SfcI CTRYAG 2 cut(s) 168, 908
SinI GGWCC 3 cut(s) 469, 677, 1335
SmiMI CAYNNNNRTG 5 cut(s) 273, 329, 531, 545, 1389
SmlI CTYRAG 2 cut(s) 130, 770
SmoI CTYRAG 2 cut(s) 130, 770
SphI GCATGC 1 cut(s) 1254
SseBI AGGCCT 1 cut(s) 1121
SsiI CCGC 3 cut(s) 59, 418, 968
SspI AATATT 2 cut(s) 926, 1057
StuI AGGCCT 1 cut(s) 1121
StyD4I CCNGG 8 cut(s) 8, 402, 607, 666, 673, 679, 1511, 1630
StyI CCWWGG 2 cut(s) 355, 526
TaaI ACNGT 3 cut(s) 331, 1375, 1411
TaiI ACGT 2 cut(s) 715, 1132
TaqI TCGA 5 cut(s) 241, 504, 820, 1422, 1444
TatI WGTACW 1 cut(s) 462
TauI GCSGC 1 cut(s) 971
TfiI GAWTC 2 cut(s) 1414, 1627
Tru1I TTAA 4 cut(s) 294, 630, 960, 1463
Tru9I TTAA 4 cut(s) 294, 630, 960, 1463
TscAI CASTG 3 cut(s) 336, 936, 1416
TseFI GTSAC 3 cut(s) 455, 509, 895
TseI GCWGC 3 cut(s) 126, 173, 830
Tsp45I GTSAC 3 cut(s) 455, 509, 895
TspDTI ATGAA 8 cut(s) 312, 572, 648, 1047, 1469, 1556, 1601, 1640
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 3 cut(s) 336, 936, 1416
Van91I CCANNNNNTGG 3 cut(s) 488, 680, 1474
VpaK11BI GGWCC 3 cut(s) 469, 677, 1335
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 2 cut(s) 915, 1072
XceI RCATGY 4 cut(s) 550, 581, 1254, 1509
XcmI CCANNNNNNNNNTGG 2 cut(s) 147, 1345
Zsp2I ATGCAT 1 cut(s) 1357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.