Rmu_sc0000775.1_g000016

D-lactate dehydrogenase cytochrome

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000775.1
Physical Location & Seq
Forward (+)
79457 .. 89705
10249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000775.1_g000016.1.cds

Sequence Viewer

Length: 2223 bp
atggccatgtcttcctggttctctcgcttacgccattcctcaaagtccttgttcaactctactccgcctctcctccgatcctccttctccaccaagctcatcacaactccaacaccaacagcaaactccggcagctcaacacacccatttccgttttggtctcttccaatcgctgtagcggctggatcactcgccctctatccccaatcaaacccctcactctgtcaagctcccaatgccaatgctcgcaccgagtttgtggtcaagggctcacacaaggatgtaccacaagaacttatcaatgaattgaaggctgtttgtaaggataacatgacagtggattatgaggagaggtataaccatggtaagccacaaaacagctttcacaaagctgtcaacattcctgacctggttgttttcgcgcggtctgaagaggaagtttgctctctgtttttgatcaaacccagcaccgagtttgtggtcaaaggcgtacacaaggatgtcccacaagaacttatcaatgaattgaaggctgtttgtaaggataacatgacagtggattatgaggagaggtataaccatggtaaaccacaaaacagctttcacaaagctgtcaacattcctgacctggttgttttcgcgcggtctgaagaggaagtttgtaagatagtcaagctatgtgacaaacacaaggtccccattgtgccatatggtggagcgacatcaatcgagggtcacaccttgtctccccatggaggtgtttgcattgacatgtcatcaatgaagaatgtcaaagctttacatgttgaggacatggatgtcattgttgaacctggcattggatggatggagcttaatgaatacttggagccttatggtttattctttcccctggatccaggacctggtgcaacaattggaggaatgtgtgctacacgttgctctggttcgttagctaatgtcaaagctttacatgttgaggacatggatgtcattgttgaacctggcattggatggatggagcttaatgaatacttggagccttatggtttattctttcccctggatccaggacctggtgcaacaattggaggaatgtgtgctacacgttgctctggttcgttagctgttaggtatggaaccatgcgtgataatgtcatcagtctcaaggcagttcttgcaaatggagaggtggtgaagactgcatctcgtgctcgtaagagtgcagcagggtatgatttgacacgcctgatgattggaagtgaaggaactcttggtgtaattactgaagtaactctacgactgcagaaaattccccaatattcagtggttgctatgtgtaatttcccatcagttaaggatgcggcagatgttgctattgccactatgctgtctggaatacaagtgtcaagggttgagctactggatgaagttcaagtgagggctatcaatattgctaatgggaagaatttgccagaaacaccaactttgatgtttgagtttataggcacaggagaatacaggggttgcaagattggccgacacactgaagtaccagcctatatatcattttcatcagcaatgaataaagacagagggttgaagtcatttctaacctggtatggaaccatgcgtgataatgtcatcagtctcaaggcagttcttgcaaatggagaggtggtgaagactgcatctcgtgctcgtaagagtgcagcaggtttgggtttggactttggaactctatttcaaaatttcaacattattttatcctacaatttcaacataataaggaaggaagcactctgggcatgctttgcaatggaacctgattttgaggcgatgatttcggatgtttgtgtacctctatcatgccttgcagaattgatatcaaggtccaagcaagaattggatgcgtcagaactggtttgcacagttattgctcatgctggtgatgggaacttccacacagtgattcttttcgatcctaacaaagaagaacatcgacgagaagcagagagattgaaccattttatggttcatactgccttgtcaatggaaggaacatgtaccggggaacatggtgttggcacaggaaaaatgaagtatcttgaaaaagaattaggattagaggctttgaagaccatgaaaagaataaaagtagcattggatcccaacaacatcatgaatccaggaaagcttattccttctcatgtttgtttctaa

Protein Analysis

740

Amino Acids

81.14

Weight (kDa)

6.26

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 818, 989
Acc36I ACCTGC 1 cut(s) 1706
AccB7I CCANNNNNTGG 4 cut(s) 713, 905, 1076, 2032
AccII CGCG 4 cut(s) 422, 424, 641, 643
AciI CCGC 5 cut(s) 65, 179, 424, 643, 1364
AclWI GGATC 9 cut(s) 72, 193, 890, 903, 1061, 1074, 1976, 2162, 2175
AcoI YGGCCR 2 cut(s) 3, 1537
AcsI RAATTY 3 cut(s) 1311, 1468, 1750
AcuI CTGAAG 4 cut(s) 450, 669, 1308, 1569
AdeI CACNNNGTG 1 cut(s) 1969
AfaI GTAC 5 cut(s) 285, 492, 1554, 1860, 2068
AfiI CCNNNNNNNGG 7 cut(s) 713, 755, 839, 905, 1010, 1076, 2032
AflIII ACRYGT 6 cut(s) 771, 802, 935, 973, 1106, 2063
AjuI GAANNNNNNNTTGG 8 cut(s) 822, 854, 993, 1025, 1257, 1289, 2067, 2099
Alw21I GWGCWC 2 cut(s) 1216, 1702
Alw26I GTCTC 4 cut(s) 165, 750, 1169, 1655
AlwI GGATC 9 cut(s) 72, 193, 890, 903, 1061, 1074, 1976, 2162, 2175
AlwNI CAGNNNCTG 2 cut(s) 905, 1076
AoxI GGCC 2 cut(s) 3, 1537
ApeKI GCWGC 3 cut(s) 132, 1226, 1712
ApoI RAATTY 3 cut(s) 1311, 1468, 1750
ArsI GACNNNNNNTTYG 2 cut(s) 678, 710
AspLEI GCGC 2 cut(s) 424, 643
AspS9I GGNCC 4 cut(s) 694, 902, 1073, 1893
AsuC2I CCSGG 1 cut(s) 2071
AsuHPI GGTGA 3 cut(s) 1207, 1693, 1961
AvaII GGWCC 4 cut(s) 694, 902, 1073, 1893
BaeI ACNNNNGTAYC 2 cut(s) 1536, 1569
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 3 cut(s) 895, 1066, 2167
BanII GRGCYC 1 cut(s) 272
BarI GAAGNNNNNNTAC 2 cut(s) 1281, 1313
BauI CACGAG 2 cut(s) 1209, 1695
BbsI GAAGAC 4 cut(s) 3, 1205, 1691, 2144
Bbv12I GWGCWC 2 cut(s) 1216, 1702
BbvI GCAGC 3 cut(s) 144, 1238, 1724
BccI CCATC 6 cut(s) 837, 841, 1008, 1012, 1357, 1946
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 1 cut(s) 2071
BcoDI GTCTC 4 cut(s) 165, 750, 1169, 1655
BfmI CTRYAG 2 cut(s) 174, 1304
BfuAI ACCTGC 1 cut(s) 1706
BisI GCNGC 5 cut(s) 133, 180, 1227, 1365, 1713
BlsI GCNGC 5 cut(s) 134, 181, 1228, 1366, 1714
Bme18I GGWCC 4 cut(s) 694, 902, 1073, 1893
BmgT120I GGNCC 4 cut(s) 694, 902, 1073, 1893
BmiI GGNNCC 9 cut(s) 696, 870, 897, 1041, 1068, 1141, 1627, 1824, 2169
BmsI GCATC 4 cut(s) 1214, 1351, 1700, 1900
BpiI GAAGAC 4 cut(s) 3, 1205, 1691, 2144
BpuEI CTTGAG 2 cut(s) 1151, 1637
BpuMI CCSGG 1 cut(s) 2071
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 6 cut(s) 361, 580, 751, 891, 1062, 2070
BsaXI ACNNNNNCTCC 6 cut(s) 730, 760, 1179, 1209, 1665, 1695
Bsc4I CCNNNNNNNGG 7 cut(s) 713, 755, 839, 905, 1010, 1076, 2032
Bse1I ACTGG 2 cut(s) 1428, 1926
Bse3DI GCAATG 2 cut(s) 1587, 1824
BseDI CCNNGG 6 cut(s) 361, 580, 751, 891, 1062, 2070
BseLI CCNNNNNNNGG 7 cut(s) 713, 755, 839, 905, 1010, 1076, 2032
BseMI GCAATG 2 cut(s) 1587, 1824
BseNI ACTGG 2 cut(s) 1428, 1926
BseRI GAGGAG 3 cut(s) 62, 362, 581
BseXI GCAGC 3 cut(s) 144, 1238, 1724
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 2 cut(s) 1245, 1731
Bsh1236I CGCG 4 cut(s) 422, 424, 641, 643
BshFI GGCC 2 cut(s) 5, 1539
BsiHKAI GWGCWC 2 cut(s) 1216, 1702
BsiSI CCGG 2 cut(s) 129, 2070
BslFI GGGAC 2 cut(s) 488, 680
BslI CCNNNNNNNGG 7 cut(s) 713, 755, 839, 905, 1010, 1076, 2032
BsmAI GTCTC 4 cut(s) 165, 750, 1169, 1655
BsmFI GGGAC 2 cut(s) 488, 680
BsnI GGCC 2 cut(s) 5, 1539
Bso31I GGTCTC 1 cut(s) 165
Bsp1286I GDGCHC 3 cut(s) 272, 1216, 1702
Bsp143I GATC 7 cut(s) 77, 185, 456, 895, 1066, 1981, 2167
Bsp19I CCATGG 3 cut(s) 361, 580, 751
BspACI CCGC 5 cut(s) 65, 179, 424, 643, 1364
BspANI GGCC 2 cut(s) 5, 1539
BspFNI CGCG 4 cut(s) 422, 424, 641, 643
BspHI TCATGA 1 cut(s) 2181
BspLI GGNNCC 9 cut(s) 696, 870, 897, 1041, 1068, 1141, 1627, 1824, 2169
BspMAI CTGCAG 1 cut(s) 1308
BspMI ACCTGC 1 cut(s) 1706
BspPI GGATC 9 cut(s) 72, 193, 890, 903, 1061, 1074, 1976, 2162, 2175
BspTNI GGTCTC 1 cut(s) 165
BsrDI GCAATG 2 cut(s) 1587, 1824
BsrI ACTGG 2 cut(s) 1428, 1926
BssECI CCNNGG 6 cut(s) 361, 580, 751, 891, 1062, 2070
BssMI GATC 7 cut(s) 77, 185, 456, 895, 1066, 1981, 2167
BssSI CACGAG 2 cut(s) 1209, 1695
BssT1I CCWWGG 3 cut(s) 361, 580, 751
Bst2BI CACGAG 2 cut(s) 1209, 1695
Bst4CI ACNGT 4 cut(s) 337, 556, 1933, 1969
Bst6I CTCTTC 3 cut(s) 168, 426, 645
BstAPI GCANNNNNTGC 6 cut(s) 1178, 1211, 1373, 1664, 1697, 1814
BstC8I GCNNGC 2 cut(s) 247, 1810
BstDSI CCRYGG 3 cut(s) 361, 580, 751
BstFNI CGCG 4 cut(s) 422, 424, 641, 643
BstHHI GCGC 2 cut(s) 424, 643
BstKTI GATC 7 cut(s) 80, 188, 459, 898, 1069, 1984, 2170
BstMAI GTCTC 4 cut(s) 165, 750, 1169, 1655
BstMBI GATC 7 cut(s) 77, 185, 456, 895, 1066, 1981, 2167
BstNSI RCATGY 5 cut(s) 775, 806, 977, 1812, 2067
BstSFI CTRYAG 2 cut(s) 174, 1304
BstUI CGCG 4 cut(s) 422, 424, 641, 643
BstV1I GCAGC 3 cut(s) 144, 1238, 1724
BstV2I GAAGAC 4 cut(s) 3, 1205, 1691, 2144
BstX2I RGATCY 3 cut(s) 895, 1066, 2167
BstYI RGATCY 3 cut(s) 895, 1066, 2167
BsuRI GGCC 2 cut(s) 5, 1539
BtgI CCRYGG 3 cut(s) 361, 580, 751
BtgZI GCGATG 1 cut(s) 1853
BtsIMutI CAGTG 5 cut(s) 342, 561, 1332, 1545, 1974
BveI ACCTGC 1 cut(s) 1706
Cac8I GCNNGC 2 cut(s) 247, 1810
CaiI CAGNNNCTG 2 cut(s) 905, 1076
CciI TCATGA 1 cut(s) 2181
CfoI GCGC 2 cut(s) 424, 643
Cfr13I GGNCC 4 cut(s) 694, 902, 1073, 1893
CseI GACGC 1 cut(s) 1902
CsiI ACCWGGT 5 cut(s) 408, 627, 904, 1075, 1616
Csp6I GTAC 5 cut(s) 284, 491, 1553, 1859, 2067
CviQI GTAC 5 cut(s) 284, 491, 1553, 1859, 2067
DpnI GATC 7 cut(s) 79, 187, 458, 897, 1068, 1983, 2169
DpnII GATC 7 cut(s) 77, 185, 456, 895, 1066, 1981, 2167
DraIII CACNNNGTG 1 cut(s) 1969
DrdI GACNNNNNNGTC 2 cut(s) 818, 989
DseDI GACNNNNNNGTC 2 cut(s) 818, 989
EaeI YGGCCR 2 cut(s) 3, 1537
Eam1104I CTCTTC 3 cut(s) 168, 426, 645
EarI CTCTTC 3 cut(s) 168, 426, 645
EciI GGCGGA 1 cut(s) 54
Eco130I CCWWGG 3 cut(s) 361, 580, 751
Eco24I GRGCYC 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 165
Eco32I GATATC 1 cut(s) 1887
Eco47I GGWCC 4 cut(s) 694, 902, 1073, 1893
Eco57I CTGAAG 4 cut(s) 450, 669, 1308, 1569
EcoO109I RGGNCCY 3 cut(s) 694, 902, 1073
EcoRV GATATC 1 cut(s) 1887
EcoT14I CCWWGG 3 cut(s) 361, 580, 751
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 3 cut(s) 361, 580, 751
FalI AAGNNNNNCTT 2 cut(s) 1257, 1289
FaqI GGGAC 2 cut(s) 488, 680
FauNDI CATATG 1 cut(s) 709
FbaI TGATCA 1 cut(s) 456
Fnu4HI GCNGC 5 cut(s) 133, 180, 1227, 1365, 1713
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 5 cut(s) 133, 180, 1227, 1365, 1713
GlaI GCGC 2 cut(s) 423, 642
GluI GCNGC 5 cut(s) 133, 180, 1227, 1365, 1713
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 2 cut(s) 5, 1539
HapII CCGG 2 cut(s) 129, 2070
HgaI GACGC 1 cut(s) 1902
HhaI GCGC 2 cut(s) 424, 643
Hin6I GCGC 2 cut(s) 422, 641
HinP1I GCGC 2 cut(s) 422, 641
HincII GTYRAC 2 cut(s) 397, 616
HindII GTYRAC 2 cut(s) 397, 616
HindIII AAGCTT 3 cut(s) 795, 966, 2195
HinfI GANTC 2 cut(s) 1972, 2185
HpaII CCGG 2 cut(s) 129, 2070
HphI GGTGA 3 cut(s) 1207, 1693, 1961
Hpy166II GTNNAC 5 cut(s) 397, 493, 587, 616, 1859
Hpy188I TCNGA 5 cut(s) 77, 430, 649, 1849, 1918
Hpy188III TCNNGA 5 cut(s) 404, 623, 1395, 2108, 2182
Hpy8I GTNNAC 5 cut(s) 397, 493, 587, 616, 1859
Hpy99I CGWCG 1 cut(s) 2007
HpyAV CCTTC 7 cut(s) 94, 304, 523, 1259, 1786, 2051, 2214
HpyCH4III ACNGT 4 cut(s) 337, 556, 1933, 1969
HpyCH4IV ACGT 2 cut(s) 937, 1108
HpySE526I ACGT 2 cut(s) 937, 1108
HspAI GCGC 2 cut(s) 422, 641
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 7 cut(s) 77, 185, 456, 895, 1066, 1981, 2167
LmnI GCTCC 6 cut(s) 235, 716, 850, 868, 1021, 1039
Lsp1109I GCAGC 3 cut(s) 144, 1238, 1724
LweI GCATC 4 cut(s) 1214, 1351, 1700, 1900
MabI ACCWGGT 5 cut(s) 408, 627, 904, 1075, 1616
MaeII ACGT 2 cut(s) 937, 1108
MaeIII GTNAC 3 cut(s) 680, 734, 1291
MalI GATC 7 cut(s) 79, 187, 458, 897, 1068, 1983, 2169
MboI GATC 7 cut(s) 77, 185, 456, 895, 1066, 1981, 2167
MfeI CAATTG 2 cut(s) 915, 1086
MflI RGATCY 3 cut(s) 895, 1066, 2167
MhlI GDGCHC 3 cut(s) 272, 1216, 1702
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 134
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 855, 1026, 1356
MslI CAYNNNNRTG 7 cut(s) 279, 335, 498, 554, 756, 770, 1947
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 129, 2070
MunI CAATTG 2 cut(s) 915, 1086
MvnI CGCG 4 cut(s) 422, 424, 641, 643
NciI CCSGG 1 cut(s) 2071
NcoI CCATGG 3 cut(s) 361, 580, 751
NdeI CATATG 1 cut(s) 709
NdeII GATC 7 cut(s) 77, 185, 456, 895, 1066, 1981, 2167
NlaIV GGNNCC 9 cut(s) 696, 870, 897, 1041, 1068, 1141, 1627, 1824, 2169
NmuCI GTSAC 2 cut(s) 680, 734
NspI RCATGY 5 cut(s) 775, 806, 977, 1812, 2067
PaeI GCATGC 1 cut(s) 1812
PagI TCATGA 1 cut(s) 2181
PciI ACATGT 4 cut(s) 771, 802, 973, 2063
PfeI GAWTC 2 cut(s) 1972, 2185
PflMI CCANNNNNTGG 4 cut(s) 713, 905, 1076, 2032
PfoI TCCNGGA 3 cut(s) 898, 1069, 2188
PkrI GCNGC 5 cut(s) 134, 181, 1228, 1366, 1714
PpuMI RGGWCCY 3 cut(s) 694, 902, 1073
PscI ACATGT 4 cut(s) 771, 802, 973, 2063
Psp5II RGGWCCY 3 cut(s) 694, 902, 1073
PspFI CCCAGC 1 cut(s) 464
PspN4I GGNNCC 9 cut(s) 696, 870, 897, 1041, 1068, 1141, 1627, 1824, 2169
PspPI GGNCC 4 cut(s) 694, 902, 1073, 1893
PspPPI RGGWCCY 3 cut(s) 694, 902, 1073
PstI CTGCAG 1 cut(s) 1308
PstNI CAGNNNCTG 2 cut(s) 905, 1076
PsuI RGATCY 3 cut(s) 895, 1066, 2167
RsaI GTAC 5 cut(s) 285, 492, 1554, 1860, 2068
RsaNI GTAC 5 cut(s) 284, 491, 1553, 1859, 2067
RseI CAYNNNNRTG 7 cut(s) 279, 335, 498, 554, 756, 770, 1947
SaqAI TTAA 3 cut(s) 855, 1026, 1356
SatI GCNGC 5 cut(s) 133, 180, 1227, 1365, 1713
Sau3AI GATC 7 cut(s) 77, 185, 456, 895, 1066, 1981, 2167
Sau96I GGNCC 4 cut(s) 694, 902, 1073, 1893
SduI GDGCHC 3 cut(s) 272, 1216, 1702
SexAI ACCWGGT 5 cut(s) 408, 627, 904, 1075, 1616
SfaNI GCATC 4 cut(s) 1214, 1351, 1700, 1900
SfcI CTRYAG 2 cut(s) 174, 1304
SinI GGWCC 4 cut(s) 694, 902, 1073, 1893
SmiMI CAYNNNNRTG 7 cut(s) 279, 335, 498, 554, 756, 770, 1947
SmlI CTYRAG 2 cut(s) 1166, 1652
SmoI CTYRAG 2 cut(s) 1166, 1652
SphI GCATGC 1 cut(s) 1812
SsiI CCGC 5 cut(s) 65, 179, 424, 643, 1364
SspI AATATT 2 cut(s) 1322, 1453
StyI CCWWGG 3 cut(s) 361, 580, 751
TaaI ACNGT 4 cut(s) 337, 556, 1933, 1969
TaiI ACGT 2 cut(s) 940, 1111
TaqI TCGA 3 cut(s) 729, 1980, 2002
TauI GCSGC 2 cut(s) 182, 1367
TfiI GAWTC 2 cut(s) 1972, 2185
Tru1I TTAA 3 cut(s) 855, 1026, 1356
Tru9I TTAA 3 cut(s) 855, 1026, 1356
TscAI CASTG 5 cut(s) 342, 561, 1332, 1552, 1974
TseFI GTSAC 2 cut(s) 680, 734
TseI GCWGC 3 cut(s) 132, 1226, 1712
Tsp45I GTSAC 2 cut(s) 680, 734
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 5 cut(s) 342, 561, 1332, 1552, 1974
Van91I CCANNNNNTGG 4 cut(s) 713, 905, 1076, 2032
VpaK11BI GGWCC 4 cut(s) 694, 902, 1073, 1893
XapI RAATTY 3 cut(s) 1311, 1468, 1750
XceI RCATGY 5 cut(s) 775, 806, 977, 1812, 2067
XcmI CCANNNNNNNNNTGG 2 cut(s) 153, 1903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.