Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386717.1

Orthogroup ID

OG0003659

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 852

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386717.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 370 bp

atgcgtgataatgtcatcagtctcaaggcagttcttgcaaatggagaggtggtgaagactgcatctcgtgctcgtaagagtgcagcagggtatgatttgacacgcctgatgattggaagtgaaggaactcttggtgtaattactgaagtaactctacgactgcagaaaattccccaatattcagtggttgctatgtgtaatttcccatcagttaaggatgcggcagatgttgctattgccactatgctgtctggaatacaagtgtcaagggttgagctactggatgaagttcaagtgagggctatcaatattgctaatgggaagaatttgccagaaacaccaactttgatgtttgagtttataggcacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003973 GO:0004457 GO:0004458 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0008144 GO:0008150 GO:0008152 GO:0008720 GO:0008891 GO:0009056 GO:0009438 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016898 GO:0016899 GO:0017076 GO:0019154 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042180 GO:0042182 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046185 GO:0048037 GO:0050660 GO:0050662 GO:0051596 GO:0055114 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

FAD-oxidase_C FAD_binding_4

Protein Analysis

123

Amino Acids

13.22

Weight (kDa)

7.86

Isoelectric Point (pI)

19.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06580
fragaria_vesca	FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120
malus_domestica	MD12G1046600.v1.1 MD12G1046700.v1.1 MD14G1045600.v1.1
prunus_persica	Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1
pyrus_communis	pycom12g04020 pycom12g04030
rosa_chinensis	RchiOBHm_Chr3g0477531
rosa_laevigata	RLG00000023711
rosa_multiflora	Rmu_co8386717.1_g000001 Rmu_sc0000775.1_g000016
rosa_roxburghii	Rroxscaffold_6G00403860 Rroxscaffold_6G00403870 Rroxscaffold_6G00404560
rosa_rugosa	Rorug03G0161800
rosa_samantha	Rh3AG211800 Rh3BG245600 Rh3CG239200 Rh3DG238700
rosa_wichuraiana	Rw3G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	168, 325
AcuI	CTGAAG	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	293
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	168, 325
AsuHPI	GGTGA	1 cut(s)	64
BarI	GAAGNNNNNNTAC	2 cut(s)	138, 170
BauI	CACGAG	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	161
BisI	GCNGC	2 cut(s)	84, 222
BlsI	GCNGC	2 cut(s)	85, 223
BmsI	GCATC	2 cut(s)	71, 208
BpiI	GAAGAC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bse1I	ACTGG	1 cut(s)	285
BseGI	GGATG	2 cut(s)	223, 289
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	221
BspMAI	CTGCAG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	285
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
BstAPI	GCANNNNNTGC	3 cut(s)	35, 68, 230
BstF5I	GGATG	2 cut(s)	223, 289
BstMAI	GTCTC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 68, 230
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	223, 289
BtsIMutI	CAGTG	1 cut(s)	189
CviJI	RGCY	2 cut(s)	277, 302
CviKI_1	RGCY	2 cut(s)	277, 302
Eco57I	CTGAAG	1 cut(s)	165
FaiI	YATR	4 cut(s)	93, 194, 245, 362
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
Fnu4HI	GCNGC	2 cut(s)	84, 222
FokI	GGATG	2 cut(s)	230, 296
Fsp4HI	GCNGC	2 cut(s)	84, 222
GluI	GCNGC	2 cut(s)	84, 222
HphI	GGTGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	116
HpyCH4V	TGCA	4 cut(s)	38, 62, 83, 163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 68, 230
LpnPI	CCDG	5 cut(s)	72, 119, 237, 266, 345
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	2 cut(s)	71, 208
MaeIII	GTNAC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	67, 334
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	4 cut(s)	138, 168, 199, 325
MnlI	CCTC	2 cut(s)	40, 291
MseI	TTAA	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	35, 68, 230
PkrI	GCNGC	2 cut(s)	85, 223
PstI	CTGCAG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	84, 222
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	2 cut(s)	51, 279
SfaNI	GCATC	2 cut(s)	71, 208
SfcI	CTRYAG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	4 cut(s)	138, 168, 199, 325
SsiI	CCGC	1 cut(s)	221
SspI	AATATT	2 cut(s)	179, 310
TasI	AATT	4 cut(s)	138, 168, 199, 325
TauI	GCSGC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	189
XapI	RAATTY	2 cut(s)	168, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.