Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003659

Physical Location & Seq

Genomic Coordinates Reverse (-)

4349019 .. 4349421

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1045600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACCACAAATTACAGTTCTGTTTACAGGGTTGCTATGTGTAATCTCCCTTCAACTAAGGATGCAACAGATGTTTCTATTGCTACAATGCTGTCGGGAATTCAGGTTTCAAGGGTTGAACTACTGGATGAGGTTCAAGTGAGGGCTATCAACATTGCGAATGGGAAGAATTTGCCTGAAACTACAACTTTGATGTTCGAATCTATAGGCACAGGTTTAGGTCCCTTCTATCTTGACTGTCATTTGCTTTTTATTTTAAATTTTAATTTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003973 GO:0004457 GO:0004458 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0008144 GO:0008150 GO:0008152 GO:0008720 GO:0008891 GO:0009056 GO:0009438 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016898 GO:0016899 GO:0017076 GO:0019154 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042180 GO:0042182 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046185 GO:0048037 GO:0050660 GO:0050662 GO:0051596 GO:0055114 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

FAD-oxidase_C FAD_binding_4

Protein Analysis

92

Amino Acids

9.99

Weight (kDa)

4.75

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06580
fragaria_vesca	FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120
malus_domestica	MD12G1046600.v1.1 MD12G1046700.v1.1 MD14G1045600.v1.1
prunus_persica	Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1
pyrus_communis	pycom12g04020 pycom12g04030
rosa_chinensis	RchiOBHm_Chr3g0477531
rosa_laevigata	RLG00000023711
rosa_multiflora	Rmu_co8386717.1_g000001 Rmu_sc0000775.1_g000016
rosa_roxburghii	Rroxscaffold_6G00403860 Rroxscaffold_6G00403870 Rroxscaffold_6G00404560
rosa_rugosa	Rorug03G0161800
rosa_samantha	Rh3AG211800 Rh3BG245600 Rh3CG239200 Rh3DG238700
rosa_wichuraiana	Rw3G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	99, 169, 259
AgsI	TTSAA	4 cut(s)	54, 111, 119, 137
ApoI	RAATTY	3 cut(s)	99, 169, 259
AspS9I	GGNCC	1 cut(s)	221
AsuII	TTCGAA	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	221
BarI	GAAGNNNNNNTAC	2 cut(s)	34, 66
BfmI	CTRYAG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	223
BmsI	GCATC	1 cut(s)	52
Bpu14I	TTCGAA	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	67, 133
BseMI	GCAATG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	207
Bsp119I	TTCGAA	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	223
BspT104I	TTCGAA	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	17, 239
BstBI	TTCGAA	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	67, 133
BstSFI	CTRYAG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	67, 133
Cfr13I	GGNCC	1 cut(s)	221
CviJI	RGCY	2 cut(s)	146, 273
CviKI_1	RGCY	2 cut(s)	146, 273
DdeI	CTNAG	1 cut(s)	57
DraI	TTTAAA	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	99
FaiI	YATR	2 cut(s)	38, 206
FaqI	GGGAC	1 cut(s)	207
FokI	GGATG	2 cut(s)	74, 140
HinfI	GANTC	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	96, 233
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	60, 235
HpyCH4III	ACNGT	2 cut(s)	17, 239
HpyCH4V	TGCA	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	57
LpnPI	CCDG	5 cut(s)	13, 89, 110, 189, 198
LweI	GCATC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	178
MluCI	AATT	5 cut(s)	10, 99, 169, 259, 265
MnlI	CCTC	2 cut(s)	124, 135
MseI	TTAA	2 cut(s)	257, 264
NlaIV	GGNNCC	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	221
PspPPI	RGGWCCY	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	257, 264
Sau96I	GGNCC	1 cut(s)	221
SetI	ASST	4 cut(s)	108, 135, 217, 223
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	198
SgeI	CNNG	9 cut(s)	40, 108, 116, 123, 137, 149, 188, 225, 245
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	5 cut(s)	10, 99, 169, 259, 265
TaaI	ACNGT	2 cut(s)	17, 239
TaqI	TCGA	1 cut(s)	198
TasI	AATT	5 cut(s)	10, 99, 169, 259, 265
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	257, 264
Tru9I	TTAA	2 cut(s)	257, 264
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	3 cut(s)	99, 169, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.