Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003659

Physical Location & Seq

Genomic Coordinates Forward (+)

26326417 .. 26334682

Gene Structure 8266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCCATGTCTTCCTGGTTCTCTCGCTTACGCTATTCCTCAAAGTCCTTGTTCAACTCTACCCCGCCTCTCCTCCGATCCTCCTTCTCCACCAAGCTCATCACAACTCCAACACCAACAGCAAACTCCGGCAGCTCAAGACACCCTTTTCCGTTTTGGTCTCTTCCAATCGCTGTAGCTGCTGGATCACTCGCCCTCTATCCCCAATCAAACCCATCACTCTGCCAAGCTCCCAGTGCCAATGCTCGGTCTGAAGAGGAAGTTTGTAAGATAGTCAAGCTATGTGACAAACACAAGGTCCCCATTGTGCCATATGGTGGAGCGACATCAATCGAGGGTCACACCTTGTCTCCCCATGGAGGTGTCTGCATTGACATGTCATCAATGAAGGACCTGGTGCAACAATTGGAGGAATGTGTGCTACACGTTGCTCTGGTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003973 GO:0004457 GO:0004458 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0008144 GO:0008150 GO:0008152 GO:0008720 GO:0008891 GO:0009056 GO:0009438 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0016898 GO:0016899 GO:0017076 GO:0019154 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042180 GO:0042182 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046185 GO:0048037 GO:0050660 GO:0050662 GO:0051596 GO:0055114 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

FAD-oxidase_C FAD_binding_4

Protein Analysis

147

Amino Acids

15.89

Weight (kDa)

8.91

Isoelectric Point (pI)

68.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	82 - 135	2.3e-10	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06580
fragaria_vesca	FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120 FvH4_6g21120
malus_domestica	MD12G1046600.v1.1 MD12G1046700.v1.1 MD14G1045600.v1.1
prunus_persica	Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088800_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1 Prupe.7G088900_v2.0.a1
pyrus_communis	pycom12g04020 pycom12g04030
rosa_chinensis	RchiOBHm_Chr3g0477531
rosa_laevigata	RLG00000023711
rosa_multiflora	Rmu_co8386717.1_g000001 Rmu_sc0000775.1_g000016
rosa_roxburghii	Rroxscaffold_6G00403860 Rroxscaffold_6G00403870 Rroxscaffold_6G00404560
rosa_rugosa	Rorug03G0161800
rosa_samantha	Rh3AG211800 Rh3BG245600 Rh3CG239200 Rh3DG238700
rosa_wichuraiana	Rw3G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	317
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	2 cut(s)	72, 193
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	273
AfiI	CCNNNNNNNGG	3 cut(s)	246, 317, 359
AflIII	ACRYGT	2 cut(s)	375, 424
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	14, 393
AluBI	AGCT	5 cut(s)	97, 135, 179, 230, 280
AluI	AGCT	5 cut(s)	97, 135, 179, 230, 280
Alw26I	GTCTC	2 cut(s)	165, 354
AlwI	GGATC	2 cut(s)	72, 193
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	132, 179
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AspS9I	GGNCC	2 cut(s)	298, 391
AvaII	GGWCC	2 cut(s)	298, 391
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	3
BbvI	GCAGC	2 cut(s)	144, 166
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	16, 395
BcoDI	GTCTC	2 cut(s)	165, 354
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	2 cut(s)	133, 180
BlsI	GCNGC	2 cut(s)	134, 181
Bme1390I	CCNGG	2 cut(s)	16, 395
Bme18I	GGWCC	2 cut(s)	298, 391
BmgT120I	GGNCC	2 cut(s)	298, 391
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	16, 395
BmrI	ACTGGG	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	3
BpuEI	CTTGAG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	246, 317, 359
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	16, 395
BseDI	CCNNGG	1 cut(s)	355
BseLI	CCNNNNNNNGG	3 cut(s)	246, 317, 359
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	144, 166
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	3 cut(s)	246, 317, 359
BsmAI	GTCTC	2 cut(s)	165, 354
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	77, 185
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	2 cut(s)	72, 193
BspTNI	GGTCTC	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	77, 185
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	16, 395
Bst6I	CTCTTC	2 cut(s)	168, 249
BstDSI	CCRYGG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	80, 188
BstMAI	GTCTC	2 cut(s)	165, 354
BstMBI	GATC	2 cut(s)	77, 185
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 236
BstNI	CCWGG	2 cut(s)	16, 395
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	14, 393
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	144, 166
BstV2I	GAAGAC	1 cut(s)	3
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	298, 391
CsiI	ACCWGGT	1 cut(s)	393
CviAII	CATG	3 cut(s)	7, 356, 376
CviJI	RGCY	6 cut(s)	5, 97, 135, 179, 230, 280
CviKI_1	RGCY	6 cut(s)	5, 97, 135, 179, 230, 280
DpnI	GATC	2 cut(s)	79, 187
DpnII	GATC	2 cut(s)	77, 185
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	168, 249
EarI	CTCTTC	2 cut(s)	168, 249
Eco130I	CCWWGG	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	298, 391
Eco57I	CTGAAG	1 cut(s)	273
EcoO109I	RGGNCCY	2 cut(s)	298, 391
EcoRII	CCWGG	2 cut(s)	14, 393
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	3 cut(s)	10, 359, 379
FaiI	YATR	6 cut(s)	8, 283, 313, 315, 357, 377
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	3 cut(s)	6, 355, 375
FauI	CCCGC	1 cut(s)	72
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	133, 180
Fsp4HI	GCNGC	2 cut(s)	133, 180
GluI	GCNGC	2 cut(s)	133, 180
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	3 cut(s)	10, 359, 379
HpaII	CCGG	1 cut(s)	129
Hpy188I	TCNGA	2 cut(s)	77, 253
Hpy188III	TCNNGA	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	94, 382
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	2 cut(s)	369, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 236
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	10, 359, 379
Kzo9I	GATC	2 cut(s)	77, 185
LmnI	GCTCC	2 cut(s)	235, 320
LpnPI	CCDG	7 cut(s)	28, 142, 168, 247, 380, 407, 419
Lsp1109I	GCAGC	2 cut(s)	144, 166
MabI	ACCWGGT	1 cut(s)	393
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	284, 338
MalI	GATC	2 cut(s)	79, 187
MboI	GATC	2 cut(s)	77, 185
MboII	GAAGA	3 cut(s)	3, 155, 266
MfeI	CAATTG	1 cut(s)	404
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	404
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	9 cut(s)	49, 78, 83, 91, 206, 250, 328, 353, 403
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	360, 374
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	16, 395
MunI	CAATTG	1 cut(s)	404
MvaI	CCWGG	2 cut(s)	16, 395
MwoI	GCNNNNNNNGC	2 cut(s)	179, 236
NcoI	CCATGG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	2 cut(s)	77, 185
NlaIII	CATG	3 cut(s)	10, 359, 379
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	2 cut(s)	284, 338
NspI	RCATGY	1 cut(s)	379
PciI	ACATGT	1 cut(s)	375
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	134, 181
PpuMI	RGGWCCY	2 cut(s)	298, 391
PscI	ACATGT	1 cut(s)	375
Psp5II	RGGWCCY	2 cut(s)	298, 391
Psp6I	CCWGG	2 cut(s)	14, 393
PspGI	CCWGG	2 cut(s)	14, 393
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	298, 391
PspPPI	RGGWCCY	2 cut(s)	298, 391
RseI	CAYNNNNRTG	2 cut(s)	360, 374
SatI	GCNGC	2 cut(s)	133, 180
Sau3AI	GATC	2 cut(s)	77, 185
Sau96I	GGNCC	2 cut(s)	298, 391
ScrFI	CCNGG	2 cut(s)	16, 395
SexAI	ACCWGGT	1 cut(s)	393
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	2 cut(s)	298, 391
SmiMI	CAYNNNNRTG	2 cut(s)	360, 374
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	1 cut(s)	404
SsiI	CCGC	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	14, 393
StyI	CCWWGG	1 cut(s)	355
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	333
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	1 cut(s)	404
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	284, 338
TseI	GCWGC	2 cut(s)	132, 179
Tsp45I	GTSAC	2 cut(s)	284, 338
TspDTI	ATGAA	1 cut(s)	401
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	298, 391
XceI	RCATGY	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.