Rw3G019190

D-lactate dehydrogenase cytochrome

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
21695285 .. 21704512
9228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G019190.1

Sequence Viewer

Length: 1341 bp
ATGACAGTGGATTATGAGGAGAGGTATAACCATGGTAAGCCACAAAACAGCTTTCACAAAGCTGTCAACATTCCTGACCTGGTTGTTTTCCCGCGGTCTGAAGAGGAAGTCTGTAAGATAGTCAAGCTATGTGACAAGCACAAGGTCCCCATTGTGCCATATGGTGGAGCGACATCAATCGAGGGTCACACCTTGTCTCCCCATGGAGGTGTTTGCATTGACATGTCATCAATGAAGAATGTCAAAGCTTTACATGTTGAGGACATGGATGTCATTGTTGAACCTGGCATTGGATGGATGGAGCTTAATGAATACTTGGAGCCTTATGGTTTATTCTTTCCCCTGGATCCAGGACCTGGTGCAACAATTGGAGGAATGTGTGCTACACGTTGCTCTGGTTCGTTAGCTGTTAGGTATGGAACCATGCGTGATAATGTCATCAGTCTCAAGGCAGTTCTTGCAAATGGAGAGGTGGTGAAGACTGCATCTCGTGCTCGAAAGAGTGCAGCAGGGTATGATTTGACACGCCTGATGATTGGAAGTGAAGGAACTCTTGGTGTAATTACTGAAGTAACTCTACGACTGCAGAAAATTCCCCAATATTCAGTGGTTGCTATGTGTAATTTCCCATCAATTAAGGATGCGGCAGATGTTGCTATTGCCACTATGCTGTCTGGAATACAAGTGTCAAGGGTTGAGCTACTGGATGAAGTTCAAGTGAGGGCTATCAATATTGCTAATGGGAAGAATTTGCCAGAAACACCAACTTTGATGTTTGAGTTTATAGGCACAGAGGCCTATTCACGTGAACAAACCCAAATAGTTCAGAAGATTGTGTCTGAACACAATGGCTCAGACTTTGTTTTTGCAGAAGACCCTGATACTAAAAAGGAACTCTGGGAGATAAGGAAGGAAGCACTCTGGGCATGCTTTGCAATGGAACCTGATTTTGAGGCGATGATTTCGGATGTTTGTGTACCTCTATCATGCCTTGCAGAATTGATATCAAGGTCCAAGCAAGAATTGGATGCATCAGAACTGGTTTGCACAGTTATTGCTCATGCTGGTGATGGGAACTTCCACACAGTGATTCTTTTCGATCCTAACAAAGAAGAACATCGACGAGAAGCAGAGAGATTGAACCATTTTATGGTTCATGCTGCCTTGTCAATGGAAGGAACATGTACCGGGGAACATGGTGTTGGCACAGGAAAAATGAAGTATCTTGAAAAAGAATTAGGAGTAGAGGCTTTGAAGACCATGAAAAGAATAAAAGTAGCATTGGATCCCAACAACATCATGAATCCAGGAAAGCTTATTCCTTCTCATGTTTGTTTCTAA

Protein Analysis

446

Amino Acids

49.1

Weight (kDa)

5.46

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 25 - 161 3.3e-38 FAD binding domain
FAD-oxidase_C PF02913 198 - 439 2.7e-71 FAD linked oxidases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AccB7I CCANNNNNTGG 3 cut(s) 164, 356, 1150
AccII CGCG 1 cut(s) 94
AciI CCGC 3 cut(s) 92, 94, 644
AclWI GGATC 5 cut(s) 341, 354, 1094, 1280, 1293
AcsI RAATTY 2 cut(s) 591, 748
AcuI CTGAAG 2 cut(s) 120, 588
AcvI CACGTG 1 cut(s) 806
AdeI CACNNNGTG 1 cut(s) 1087
AfaI GTAC 2 cut(s) 978, 1186
AfiI CCNNNNNNNGG 5 cut(s) 164, 206, 290, 356, 1150
AflIII ACRYGT 4 cut(s) 222, 253, 386, 1181
AgsI TTSAA 5 cut(s) 281, 716, 1141, 1229, 1255
AjnI CCWGG 6 cut(s) 78, 283, 342, 349, 355, 1306
AjuI GAANNNNNNNTTGG 6 cut(s) 273, 305, 537, 569, 1185, 1217
AluBI AGCT 8 cut(s) 51, 62, 127, 248, 304, 407, 700, 1315
AluI AGCT 8 cut(s) 51, 62, 127, 248, 304, 407, 700, 1315
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 2 cut(s) 201, 449
AlwI GGATC 5 cut(s) 341, 354, 1094, 1280, 1293
AlwNI CAGNNNCTG 1 cut(s) 356
AoxI GGCC 1 cut(s) 795
ApeKI GCWGC 2 cut(s) 506, 1160
ApoI RAATTY 2 cut(s) 591, 748
ArsI GACNNNNNNTTYG 2 cut(s) 848, 880
AspS9I GGNCC 3 cut(s) 145, 353, 1011
AsuC2I CCSGG 1 cut(s) 1189
AsuHPI GGTGA 2 cut(s) 487, 1079
AvaII GGWCC 3 cut(s) 145, 353, 1011
BamHI GGATCC 2 cut(s) 346, 1285
BarI GAAGNNNNNNTAC 2 cut(s) 561, 593
BauI CACGAG 1 cut(s) 489
BbrPI CACGTG 1 cut(s) 806
BbsI GAAGAC 3 cut(s) 485, 879, 1262
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 2 cut(s) 518, 1147
BccI CCATC 4 cut(s) 288, 292, 637, 1064
BciT130I CCWGG 6 cut(s) 80, 285, 344, 351, 357, 1308
BcnI CCSGG 1 cut(s) 1189
BcoDI GTCTC 2 cut(s) 201, 449
BfmI CTRYAG 1 cut(s) 584
BisI GCNGC 3 cut(s) 507, 645, 1161
BlsI GCNGC 3 cut(s) 508, 646, 1162
Bme1390I CCNGG 7 cut(s) 80, 285, 344, 351, 357, 1189, 1308
Bme18I GGWCC 3 cut(s) 145, 353, 1011
BmgT120I GGNCC 3 cut(s) 145, 353, 1011
BmiI GGNNCC 6 cut(s) 147, 321, 348, 421, 942, 1287
BmrFI CCNGG 7 cut(s) 80, 285, 344, 351, 357, 1189, 1308
BmsI GCATC 4 cut(s) 494, 631, 1018, 1040
BpiI GAAGAC 3 cut(s) 485, 879, 1262
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 1189
BsaAI YACGTR 1 cut(s) 806
BsaJI CCNNGG 5 cut(s) 31, 92, 202, 342, 1188
BsaXI ACNNNNNCTCC 4 cut(s) 181, 211, 459, 489
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 206, 290, 356, 1150
Bse1I ACTGG 2 cut(s) 708, 1044
Bse3DI GCAATG 1 cut(s) 942
BseBI CCWGG 6 cut(s) 80, 285, 344, 351, 357, 1308
BseDI CCNNGG 5 cut(s) 31, 92, 202, 342, 1188
BseGI GGATG 7 cut(s) 274, 299, 303, 646, 712, 973, 1033
BseLI CCNNNNNNNGG 5 cut(s) 164, 206, 290, 356, 1150
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 1 cut(s) 867
BseNI ACTGG 2 cut(s) 708, 1044
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 518, 1147
BsgI GTGCAG 1 cut(s) 525
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 1 cut(s) 797
BsiHKAI GWGCWC 1 cut(s) 496
BsiSI CCGG 1 cut(s) 1188
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 5 cut(s) 164, 206, 290, 356, 1150
BsmAI GTCTC 2 cut(s) 201, 449
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 797
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 3 cut(s) 346, 1099, 1285
Bsp19I CCATGG 2 cut(s) 31, 202
BspACI CCGC 3 cut(s) 92, 94, 644
BspANI GGCC 1 cut(s) 797
BspCNI CTCAG 1 cut(s) 866
BspFNI CGCG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 1299
BspLI GGNNCC 6 cut(s) 147, 321, 348, 421, 942, 1287
BspMAI CTGCAG 1 cut(s) 588
BspPI GGATC 5 cut(s) 341, 354, 1094, 1280, 1293
BsrDI GCAATG 1 cut(s) 942
BsrI ACTGG 2 cut(s) 708, 1044
BssECI CCNNGG 5 cut(s) 31, 92, 202, 342, 1188
BssMI GATC 3 cut(s) 346, 1099, 1285
BssSI CACGAG 1 cut(s) 489
BssT1I CCWWGG 2 cut(s) 31, 202
Bst2BI CACGAG 1 cut(s) 489
Bst2UI CCWGG 6 cut(s) 80, 285, 344, 351, 357, 1308
Bst4CI ACNGT 3 cut(s) 7, 1051, 1087
Bst6I CTCTTC 1 cut(s) 96
BstAPI GCANNNNNTGC 4 cut(s) 458, 491, 653, 932
BstBAI YACGTR 1 cut(s) 806
BstC8I GCNNGC 1 cut(s) 928
BstDEI CTNAG 1 cut(s) 853
BstDSI CCRYGG 3 cut(s) 31, 92, 202
BstF5I GGATG 7 cut(s) 274, 299, 303, 646, 712, 973, 1033
BstFNI CGCG 1 cut(s) 94
BstKTI GATC 3 cut(s) 349, 1102, 1288
BstMAI GTCTC 2 cut(s) 201, 449
BstMBI GATC 3 cut(s) 346, 1099, 1285
BstMWI GCNNNNNNNGC 5 cut(s) 458, 491, 653, 923, 932
BstNI CCWGG 6 cut(s) 80, 285, 344, 351, 357, 1308
BstNSI RCATGY 4 cut(s) 226, 257, 930, 1185
BstSCI CCNGG 7 cut(s) 78, 283, 342, 349, 355, 1187, 1306
BstSFI CTRYAG 1 cut(s) 584
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 518, 1147
BstV2I GAAGAC 3 cut(s) 485, 879, 1262
BstX2I RGATCY 2 cut(s) 346, 1285
BstYI RGATCY 2 cut(s) 346, 1285
BsuRI GGCC 1 cut(s) 797
BtgI CCRYGG 3 cut(s) 31, 92, 202
BtgZI GCGATG 1 cut(s) 971
BtsCI GGATG 7 cut(s) 274, 299, 303, 646, 712, 973, 1033
BtsIMutI CAGTG 3 cut(s) 12, 612, 1092
Cac8I GCNNGC 1 cut(s) 928
CaiI CAGNNNCTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 1299
Cfr13I GGNCC 3 cut(s) 145, 353, 1011
Cfr42I CCGCGG 1 cut(s) 95
CsiI ACCWGGT 2 cut(s) 78, 355
Csp6I GTAC 2 cut(s) 977, 1185
CviQI GTAC 2 cut(s) 977, 1185
DdeI CTNAG 1 cut(s) 853
DpnI GATC 3 cut(s) 348, 1101, 1287
DpnII GATC 3 cut(s) 346, 1099, 1285
DraIII CACNNNGTG 1 cut(s) 1087
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 31, 202
Eco147I AGGCCT 1 cut(s) 797
Eco32I GATATC 1 cut(s) 1005
Eco47I GGWCC 3 cut(s) 145, 353, 1011
Eco57I CTGAAG 2 cut(s) 120, 588
Eco72I CACGTG 1 cut(s) 806
EcoO109I RGGNCCY 2 cut(s) 145, 353
EcoRII CCWGG 6 cut(s) 78, 283, 342, 349, 355, 1306
EcoRV GATATC 1 cut(s) 1005
EcoT14I CCWWGG 2 cut(s) 31, 202
EcoT22I ATGCAT 1 cut(s) 1033
ErhI CCWWGG 2 cut(s) 31, 202
FalI AAGNNNNNCTT 2 cut(s) 537, 569
FaqI GGGAC 1 cut(s) 131
FauI CCCGC 1 cut(s) 99
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 507, 645, 1161
FokI GGATG 7 cut(s) 281, 306, 310, 653, 719, 980, 1040
Fsp4HI GCNGC 3 cut(s) 507, 645, 1161
GluI GCNGC 3 cut(s) 507, 645, 1161
HaeIII GGCC 1 cut(s) 797
HapII CCGG 1 cut(s) 1188
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 2 cut(s) 246, 1313
HinfI GANTC 2 cut(s) 1090, 1303
HpaII CCGG 1 cut(s) 1188
HphI GGTGA 2 cut(s) 487, 1079
Hpy166II GTNNAC 3 cut(s) 67, 809, 977
Hpy188I TCNGA 6 cut(s) 100, 828, 841, 856, 967, 1036
Hpy188III TCNNGA 4 cut(s) 74, 675, 1226, 1300
Hpy8I GTNNAC 3 cut(s) 67, 809, 977
Hpy99I CGWCG 1 cut(s) 1125
HpyAV CCTTC 4 cut(s) 539, 904, 1169, 1332
HpyCH4III ACNGT 3 cut(s) 7, 1051, 1087
HpyCH4IV ACGT 2 cut(s) 388, 805
HpyF10VI GCNNNNNNNGC 5 cut(s) 458, 491, 653, 923, 932
HpyF3I CTNAG 1 cut(s) 853
HpySE526I ACGT 2 cut(s) 388, 805
KspI CCGCGG 1 cut(s) 95
Kzo9I GATC 3 cut(s) 346, 1099, 1285
LmnI GCTCC 3 cut(s) 167, 301, 319
Lsp1109I GCAGC 2 cut(s) 518, 1147
LweI GCATC 4 cut(s) 494, 631, 1018, 1040
MabI ACCWGGT 2 cut(s) 78, 355
MaeII ACGT 2 cut(s) 388, 805
MaeIII GTNAC 3 cut(s) 131, 185, 571
MalI GATC 3 cut(s) 348, 1101, 1287
MboI GATC 3 cut(s) 346, 1099, 1285
MboII GAAGA 8 cut(s) 113, 247, 490, 757, 841, 884, 1124, 1267
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 2 cut(s) 346, 1285
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 9 cut(s) 366, 561, 591, 622, 633, 748, 998, 1022, 1235
Mph1103I ATGCAT 1 cut(s) 1033
MseI TTAA 2 cut(s) 306, 636
MslI CAYNNNNRTG 3 cut(s) 207, 221, 1065
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 1 cut(s) 1188
MspR9I CCNGG 7 cut(s) 80, 285, 344, 351, 357, 1189, 1308
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 6 cut(s) 80, 285, 344, 351, 357, 1308
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 5 cut(s) 458, 491, 653, 923, 932
NciI CCSGG 1 cut(s) 1189
NcoI CCATGG 2 cut(s) 31, 202
NdeI CATATG 1 cut(s) 160
NdeII GATC 3 cut(s) 346, 1099, 1285
NlaIV GGNNCC 6 cut(s) 147, 321, 348, 421, 942, 1287
NmuCI GTSAC 2 cut(s) 131, 185
NsiI ATGCAT 1 cut(s) 1033
NspI RCATGY 4 cut(s) 226, 257, 930, 1185
PaeI GCATGC 1 cut(s) 930
PagI TCATGA 1 cut(s) 1299
PceI AGGCCT 1 cut(s) 797
PciI ACATGT 3 cut(s) 222, 253, 1181
PfeI GAWTC 2 cut(s) 1090, 1303
PflMI CCANNNNNTGG 3 cut(s) 164, 356, 1150
PfoI TCCNGGA 2 cut(s) 349, 1306
PkrI GCNGC 3 cut(s) 508, 646, 1162
PmaCI CACGTG 1 cut(s) 806
PmlI CACGTG 1 cut(s) 806
Ppu21I YACGTR 1 cut(s) 806
PpuMI RGGWCCY 2 cut(s) 145, 353
PscI ACATGT 3 cut(s) 222, 253, 1181
Psp5II RGGWCCY 2 cut(s) 145, 353
Psp6I CCWGG 6 cut(s) 78, 283, 342, 349, 355, 1306
PspCI CACGTG 1 cut(s) 806
PspGI CCWGG 6 cut(s) 78, 283, 342, 349, 355, 1306
PspN4I GGNNCC 6 cut(s) 147, 321, 348, 421, 942, 1287
PspPI GGNCC 3 cut(s) 145, 353, 1011
PspPPI RGGWCCY 2 cut(s) 145, 353
PstI CTGCAG 1 cut(s) 588
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 2 cut(s) 346, 1285
RsaI GTAC 2 cut(s) 978, 1186
RsaNI GTAC 2 cut(s) 977, 1185
RseI CAYNNNNRTG 3 cut(s) 207, 221, 1065
SacII CCGCGG 1 cut(s) 95
SaqAI TTAA 2 cut(s) 306, 636
SatI GCNGC 3 cut(s) 507, 645, 1161
Sau3AI GATC 3 cut(s) 346, 1099, 1285
Sau96I GGNCC 3 cut(s) 145, 353, 1011
ScrFI CCNGG 7 cut(s) 80, 285, 344, 351, 357, 1189, 1308
SduI GDGCHC 1 cut(s) 496
SexAI ACCWGGT 2 cut(s) 78, 355
SfaNI GCATC 4 cut(s) 494, 631, 1018, 1040
SfcI CTRYAG 1 cut(s) 584
Sfr303I CCGCGG 1 cut(s) 95
SgrBI CCGCGG 1 cut(s) 95
SinI GGWCC 3 cut(s) 145, 353, 1011
SmiMI CAYNNNNRTG 3 cut(s) 207, 221, 1065
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SphI GCATGC 1 cut(s) 930
Sse9I AATT 9 cut(s) 366, 561, 591, 622, 633, 748, 998, 1022, 1235
SseBI AGGCCT 1 cut(s) 797
SsiI CCGC 3 cut(s) 92, 94, 644
SspI AATATT 2 cut(s) 602, 733
StuI AGGCCT 1 cut(s) 797
StyD4I CCNGG 7 cut(s) 78, 283, 342, 349, 355, 1187, 1306
StyI CCWWGG 2 cut(s) 31, 202
TaaI ACNGT 3 cut(s) 7, 1051, 1087
TaiI ACGT 2 cut(s) 391, 808
TaqI TCGA 4 cut(s) 180, 496, 1098, 1120
TasI AATT 9 cut(s) 366, 561, 591, 622, 633, 748, 998, 1022, 1235
TauI GCSGC 1 cut(s) 647
TfiI GAWTC 2 cut(s) 1090, 1303
Tru1I TTAA 2 cut(s) 306, 636
Tru9I TTAA 2 cut(s) 306, 636
TscAI CASTG 3 cut(s) 12, 612, 1092
TseFI GTSAC 2 cut(s) 131, 185
TseI GCWGC 2 cut(s) 506, 1160
Tsp45I GTSAC 2 cut(s) 131, 185
TspDTI ATGAA 7 cut(s) 248, 324, 723, 1145, 1232, 1277, 1316
TspRI CASTG 3 cut(s) 12, 612, 1092
Van91I CCANNNNNTGG 3 cut(s) 164, 356, 1150
VpaK11BI GGWCC 3 cut(s) 145, 353, 1011
XapI RAATTY 2 cut(s) 591, 748
XceI RCATGY 4 cut(s) 226, 257, 930, 1185
XcmI CCANNNNNNNNNTGG 1 cut(s) 1021
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.