Prupe.7G088900_v2.0.a1

D-lactate dehydrogenase cytochrome

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
12248599 .. 12257464
8866 bp
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UTR
Exon/CDS
Intron
Prupe.7G088900.2

Sequence Viewer

Length: 1677 bp
ATGGCAATGTCGTCGTGGTTCTCTCGCCTACGCTGTTCCTCAAAGTGCTTCTTCAACTCCTTGGCTCTACGAACCTCAGTGTCCCGCAAGCTTGTCAGAACTCAGACAACCATAAACTCTGAGAGCACAAGAAACCCATTTCTATTCTGGTCGCGCTCGCTGCTTCCAATTGCTCTCGCAGTCTCAGCTGGATCACTTGCCCTCCATCCCCAGTCAGACCCATCACTCTGTGAAGCTCCCAGTGTCAATTCTCGCGCCGAGTTAGTGGTTAAAGGCTCGCACAAGGAAGTCCCACGAGAGCTTATTGATGAATTGAAGGCTATTTGTCAAGATAATATGACACTGGATTATGAGGAGAGGTATAACCATGGAAAACCACAAAACAGCTTTCACAAAGCAGTTAATATTCCTGATGTGGTTGTTTTCCCTAGGTCCGAAGAGCAAGTTTCTAAGATAGTCAATTCATGTGACAAGCATAAGGTACCCATTGTACCATATGGTGGAGCTACATCACTTGAGGGTCACACCTTGTCTCCCAATGGAGGGGTTTGCATAGACATGTCATTAATGAATCGTGTTAAAGCATTACATGTTGAGGACATGGATGTGGTTGTTGAGCCTGGGGTTGGATGGATGGAGCTTAATGAATACCTGGAGCCTTATGGTCTATTCTTTCCCCTGGATCCAGGGCCTGGTGCAACAATTGGAGGAATGTGTGCTACACGTTGCTCTGGATCCCTAGCTGTTAGGTATGGAACCATGCGTGATAATGTCATCAGTCTCAAGGTAGTTCTTGCAAATGGAGATGTTGTGAAGACTGCATCTCGTGCTCGAAAGAGTGCTGCAGGGTATGATTTAACCCGCCTGGTGATTGGTAGTGAAGGAACTCTTGGTGTAATAACAGAAGTCACTTTACGGCTTCAAAAAATTCCACAATATTCAGTGGTTGCTGTGTGTAATTTTCCTACAGTTAAGGATGCAGCAGATGTTGCTATTGCTACTATGCTGTCTGGAATACAGGTGTCAAGGGTTGAACTACTGGATGAGGTTCAAGTGAGGGCTATCAACATTGCTAATGGGAAGAGTTTGCCTGAAACTCCGACTTTAATGTTCGAATTTATAGGCACAGAGGCATATTCCCGTGAACAAACCCTTATAGTTAAGAAGATTGCTTCTGAACACAACGGGTCAGACTTTGTTTTTGCGGAAGATCCTGAAACTAAAAAGGAACTTTGGAAGATGAGGAAGGAGGCACTTTGGGCATGCTTTGCAATGGAGCCTAATTTCGAGGCAATGATTTCGGACGTATGTGTTCCTCTATCGTGCCTTGCAGAATTGATATCAAGGTCCAAACAAGAGCTGGATGCATCAGAACTGATTTGCACAGTTATTGCTCATGCTGGTGATGGGAACTTCCACACAGTGATTCTTTTTGACCCTAACAATGAAGAACATCGACAAGAAGCACAGAGACTAAACCATTTTATGGTCCATACTGCCTTGTCAATGGAAGGAACATGTACGGGTGAACATGGCGTTGGTACAGGAAAAATGAAGTATCTGGAACAAGAATTGGGGATGGAGGCTTTGAAGACAATGAAAAGAATAAAAGCAGCATTAGATCCGAACAATACTATGAATCCAGGAAAGCTTATCCCTTCTCATGTTTGTTTTTAA

Protein Analysis

559

Amino Acids

61.35

Weight (kDa)

6.05

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 3 cut(s) 500, 692, 1486
AccII CGCG 2 cut(s) 154, 255
AciI CCGC 3 cut(s) 85, 862, 1205
AclWI GGATC 7 cut(s) 199, 677, 690, 729, 742, 1205, 1616
AcsI RAATTY 2 cut(s) 927, 1115
AdeI CACNNNGTG 2 cut(s) 230, 1423
AfaI GTAC 4 cut(s) 483, 492, 1522, 1543
AfiI CCNNNNNNNGG 6 cut(s) 500, 542, 543, 626, 692, 1486
AflIII ACRYGT 4 cut(s) 558, 589, 722, 1517
AgsI TTSAA 6 cut(s) 55, 316, 923, 1034, 1052, 1591
AjnI CCWGG 7 cut(s) 619, 651, 678, 685, 691, 864, 1642
AjuI GAANNNNNNNTTGG 4 cut(s) 873, 905, 1521, 1553
Alw21I GWGCWC 2 cut(s) 128, 832
Alw26I GTCTC 4 cut(s) 187, 537, 785, 1465
AlwI GGATC 7 cut(s) 199, 677, 690, 729, 742, 1205, 1616
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 1 cut(s) 689
ApeKI GCWGC 4 cut(s) 160, 842, 980, 1613
ApoI RAATTY 2 cut(s) 927, 1115
ArsI GACNNNNNNTTYG 2 cut(s) 1184, 1216
AseI ATTAAT 1 cut(s) 566
Asp718I GGTACC 1 cut(s) 481
AspA2I CCTAGG 1 cut(s) 428
AspLEI GCGC 2 cut(s) 156, 257
AspS9I GGNCC 4 cut(s) 432, 689, 1347, 1489
AsuHPI GGTGA 3 cut(s) 880, 1415, 1538
AsuII TTCGAA 1 cut(s) 1113
AvaII GGWCC 3 cut(s) 432, 1347, 1489
AvrII CCTAGG 1 cut(s) 428
BamHI GGATCC 2 cut(s) 682, 734
BanI GGYRCC 1 cut(s) 481
BarI GAAGNNNNNNTAC 2 cut(s) 897, 929
BauI CACGAG 2 cut(s) 294, 825
BbsI GAAGAC 2 cut(s) 821, 1598
Bbv12I GWGCWC 2 cut(s) 128, 832
BbvI GCAGC 4 cut(s) 147, 829, 992, 1625
BccI CCATC 6 cut(s) 213, 229, 624, 628, 1400, 1573
BceAI ACGGC 1 cut(s) 932
BcgI CGANNNNNNTGC 3 cut(s) 28, 1281, 1315
BciT130I CCWGG 7 cut(s) 621, 653, 680, 687, 693, 866, 1644
BcoDI GTCTC 4 cut(s) 187, 537, 785, 1465
BfaI CTAG 2 cut(s) 429, 740
BfmI CTRYAG 2 cut(s) 843, 966
BisI GCNGC 4 cut(s) 161, 843, 981, 1614
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 4 cut(s) 162, 844, 982, 1615
Bme1390I CCNGG 7 cut(s) 621, 653, 680, 687, 693, 866, 1644
Bme18I GGWCC 3 cut(s) 432, 1347, 1489
BmgT120I GGNCC 4 cut(s) 432, 689, 1347, 1489
BmiI GGNNCC 6 cut(s) 483, 657, 684, 736, 757, 1278
BmrFI CCNGG 7 cut(s) 621, 653, 680, 687, 693, 866, 1644
BmrI ACTGGG 2 cut(s) 205, 234
BmsI GCATC 4 cut(s) 830, 967, 1354, 1376
BmuI ACTGGG 2 cut(s) 205, 234
BpiI GAAGAC 2 cut(s) 821, 1598
BpmI CTGGAG 1 cut(s) 674
Bpu14I TTCGAA 1 cut(s) 1113
BpuEI CTTGAG 2 cut(s) 536, 767
BsaJI CCNNGG 6 cut(s) 60, 367, 428, 620, 678, 686
BsaXI ACNNNNNCTCC 6 cut(s) 186, 216, 517, 547, 795, 825
Bsc4I CCNNNNNNNGG 6 cut(s) 500, 542, 543, 626, 692, 1486
Bse1I ACTGG 4 cut(s) 211, 240, 348, 1044
Bse3DI GCAATG 4 cut(s) 12, 1068, 1278, 1299
BseBI CCWGG 7 cut(s) 621, 653, 680, 687, 693, 866, 1644
BseDI CCNNGG 6 cut(s) 60, 367, 428, 620, 678, 686
BseGI GGATG 8 cut(s) 205, 610, 635, 639, 982, 1048, 1369, 1584
BseLI CCNNNNNNNGG 6 cut(s) 500, 542, 543, 626, 692, 1486
BseMI GCAATG 4 cut(s) 12, 1068, 1278, 1299
BseMII CTCAG 4 cut(s) 90, 111, 116, 198
BseNI ACTGG 4 cut(s) 211, 240, 348, 1044
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 4 cut(s) 147, 829, 992, 1625
Bsh1236I CGCG 2 cut(s) 154, 255
BshFI GGCC 1 cut(s) 691
BshNI GGYRCC 1 cut(s) 481
BsiHKAI GWGCWC 2 cut(s) 128, 832
BslFI GGGAC 2 cut(s) 67, 275
BslI CCNNNNNNNGG 6 cut(s) 500, 542, 543, 626, 692, 1486
BsmAI GTCTC 4 cut(s) 187, 537, 785, 1465
BsmFI GGGAC 2 cut(s) 67, 275
BsnI GGCC 1 cut(s) 691
Bsp119I TTCGAA 1 cut(s) 1113
Bsp1286I GDGCHC 2 cut(s) 128, 832
Bsp143I GATC 5 cut(s) 191, 682, 734, 1210, 1621
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 3 cut(s) 85, 862, 1205
BspANI GGCC 1 cut(s) 691
BspCNI CTCAG 4 cut(s) 89, 112, 115, 197
BspFNI CGCG 2 cut(s) 154, 255
BspLI GGNNCC 6 cut(s) 483, 657, 684, 736, 757, 1278
BspMAI CTGCAG 1 cut(s) 847
BspPI GGATC 7 cut(s) 199, 677, 690, 729, 742, 1205, 1616
BspQI GCTCTTC 1 cut(s) 432
BspT104I TTCGAA 1 cut(s) 1113
BspT107I GGYRCC 1 cut(s) 481
BsrDI GCAATG 4 cut(s) 12, 1068, 1278, 1299
BsrI ACTGG 4 cut(s) 211, 240, 348, 1044
BssECI CCNNGG 6 cut(s) 60, 367, 428, 620, 678, 686
BssMI GATC 5 cut(s) 191, 682, 734, 1210, 1621
BssSI CACGAG 2 cut(s) 294, 825
BssT1I CCWWGG 3 cut(s) 60, 367, 428
Bst2BI CACGAG 2 cut(s) 294, 825
Bst2UI CCWGG 7 cut(s) 621, 653, 680, 687, 693, 866, 1644
Bst4CI ACNGT 3 cut(s) 970, 1387, 1423
Bst6I CTCTTC 2 cut(s) 432, 1076
BstAPI GCANNNNNTGC 3 cut(s) 827, 989, 1268
BstBI TTCGAA 1 cut(s) 1113
BstC8I GCNNGC 4 cut(s) 89, 158, 278, 1264
BstDEI CTNAG 5 cut(s) 76, 102, 120, 184, 450
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 8 cut(s) 205, 610, 635, 639, 982, 1048, 1369, 1584
BstFNI CGCG 2 cut(s) 154, 255
BstHHI GCGC 2 cut(s) 156, 257
BstKTI GATC 5 cut(s) 194, 685, 737, 1213, 1624
BstMAI GTCTC 4 cut(s) 187, 537, 785, 1465
BstMBI GATC 5 cut(s) 191, 682, 734, 1210, 1621
BstMWI GCNNNNNNNGC 6 cut(s) 160, 185, 827, 989, 1259, 1268
BstNI CCWGG 7 cut(s) 621, 653, 680, 687, 693, 866, 1644
BstNSI RCATGY 4 cut(s) 562, 593, 1266, 1521
BstSCI CCNGG 7 cut(s) 619, 651, 678, 685, 691, 864, 1642
BstSFI CTRYAG 2 cut(s) 843, 966
BstUI CGCG 2 cut(s) 154, 255
BstV1I GCAGC 4 cut(s) 147, 829, 992, 1625
BstV2I GAAGAC 2 cut(s) 821, 1598
BstX2I RGATCY 4 cut(s) 682, 734, 1210, 1621
BstYI RGATCY 4 cut(s) 682, 734, 1210, 1621
BsuRI GGCC 1 cut(s) 691
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 8 cut(s) 205, 610, 635, 639, 982, 1048, 1369, 1584
BtsIMutI CAGTG 5 cut(s) 84, 247, 341, 948, 1428
Cac8I GCNNGC 4 cut(s) 89, 158, 278, 1264
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 2 cut(s) 156, 257
Cfr13I GGNCC 4 cut(s) 432, 689, 1347, 1489
Csp6I GTAC 4 cut(s) 482, 491, 1521, 1542
CviQI GTAC 4 cut(s) 482, 491, 1521, 1542
DdeI CTNAG 5 cut(s) 76, 102, 120, 184, 450
DpnI GATC 5 cut(s) 193, 684, 736, 1212, 1623
DpnII GATC 5 cut(s) 191, 682, 734, 1210, 1621
DraIII CACNNNGTG 2 cut(s) 230, 1423
Eam1104I CTCTTC 2 cut(s) 432, 1076
EarI CTCTTC 2 cut(s) 432, 1076
Eco130I CCWWGG 3 cut(s) 60, 367, 428
Eco32I GATATC 1 cut(s) 1341
Eco47I GGWCC 3 cut(s) 432, 1347, 1489
EcoO109I RGGNCCY 1 cut(s) 689
EcoRII CCWGG 7 cut(s) 619, 651, 678, 685, 691, 864, 1642
EcoRV GATATC 1 cut(s) 1341
EcoT14I CCWWGG 3 cut(s) 60, 367, 428
EcoT22I ATGCAT 1 cut(s) 1369
ErhI CCWWGG 3 cut(s) 60, 367, 428
FalI AAGNNNNNCTT 4 cut(s) 35, 67, 873, 905
FaqI GGGAC 2 cut(s) 67, 275
FauI CCCGC 2 cut(s) 92, 869
FauNDI CATATG 1 cut(s) 496
Fnu4HI GCNGC 4 cut(s) 161, 843, 981, 1614
FokI GGATG 8 cut(s) 192, 617, 642, 646, 989, 1055, 1376, 1591
Fsp4HI GCNGC 4 cut(s) 161, 843, 981, 1614
FspBI CTAG 2 cut(s) 429, 740
GlaI GCGC 2 cut(s) 155, 256
GluI GCNGC 4 cut(s) 161, 843, 981, 1614
GsuI CTGGAG 1 cut(s) 674
HaeIII GGCC 1 cut(s) 691
HhaI GCGC 2 cut(s) 156, 257
Hin6I GCGC 2 cut(s) 154, 255
HinP1I GCGC 2 cut(s) 154, 255
HindIII AAGCTT 2 cut(s) 89, 1649
HinfI GANTC 3 cut(s) 571, 1426, 1639
HphI GGTGA 3 cut(s) 880, 1415, 1538
Hpy166II GTNNAC 2 cut(s) 1145, 1529
Hpy188III TCNNGA 6 cut(s) 329, 410, 732, 1011, 1214, 1562
Hpy8I GTNNAC 2 cut(s) 1145, 1529
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 5 cut(s) 310, 875, 1240, 1505, 1668
HpyCH4III ACNGT 3 cut(s) 970, 1387, 1423
HpyCH4IV ACGT 2 cut(s) 724, 1305
HpyF10VI GCNNNNNNNGC 6 cut(s) 160, 185, 827, 989, 1259, 1268
HpyF3I CTNAG 5 cut(s) 76, 102, 120, 184, 450
HpySE526I ACGT 2 cut(s) 724, 1305
HspAI GCGC 2 cut(s) 154, 255
KpnI GGTACC 1 cut(s) 485
Kzo9I GATC 5 cut(s) 191, 682, 734, 1210, 1621
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 5 cut(s) 241, 503, 637, 655, 1276
Lsp1109I GCAGC 4 cut(s) 147, 829, 992, 1625
LweI GCATC 4 cut(s) 830, 967, 1354, 1376
MaeI CTAG 2 cut(s) 429, 740
MaeII ACGT 2 cut(s) 724, 1305
MaeIII GTNAC 3 cut(s) 467, 521, 907
MalI GATC 5 cut(s) 193, 684, 736, 1212, 1623
MboI GATC 5 cut(s) 191, 682, 734, 1210, 1621
MboII GAAGA 9 cut(s) 43, 449, 826, 1093, 1177, 1220, 1249, 1460, 1603
MfeI CAATTG 2 cut(s) 168, 702
MflI RGATCY 4 cut(s) 682, 734, 1210, 1621
MhlI GDGCHC 2 cut(s) 128, 832
MmeI TCCRAC 2 cut(s) 607, 1124
Mph1103I ATGCAT 1 cut(s) 1369
MslI CAYNNNNRTG 3 cut(s) 557, 605, 1401
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 7 cut(s) 621, 653, 680, 687, 693, 866, 1644
MunI CAATTG 2 cut(s) 168, 702
MvaI CCWGG 7 cut(s) 621, 653, 680, 687, 693, 866, 1644
MvnI CGCG 2 cut(s) 154, 255
MwoI GCNNNNNNNGC 6 cut(s) 160, 185, 827, 989, 1259, 1268
NcoI CCATGG 1 cut(s) 367
NdeI CATATG 1 cut(s) 496
NdeII GATC 5 cut(s) 191, 682, 734, 1210, 1621
NlaIV GGNNCC 6 cut(s) 483, 657, 684, 736, 757, 1278
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 3 cut(s) 467, 521, 907
NsiI ATGCAT 1 cut(s) 1369
NspI RCATGY 4 cut(s) 562, 593, 1266, 1521
NspV TTCGAA 1 cut(s) 1113
PaeI GCATGC 1 cut(s) 1266
PciI ACATGT 3 cut(s) 558, 589, 1517
PciSI GCTCTTC 1 cut(s) 432
PfeI GAWTC 3 cut(s) 571, 1426, 1639
PflMI CCANNNNNTGG 3 cut(s) 500, 692, 1486
PfoI TCCNGGA 1 cut(s) 1642
PkrI GCNGC 4 cut(s) 162, 844, 982, 1615
PscI ACATGT 3 cut(s) 558, 589, 1517
PshBI ATTAAT 1 cut(s) 566
Psp6I CCWGG 7 cut(s) 619, 651, 678, 685, 691, 864, 1642
PspGI CCWGG 7 cut(s) 619, 651, 678, 685, 691, 864, 1642
PspN4I GGNNCC 6 cut(s) 483, 657, 684, 736, 757, 1278
PspPI GGNCC 4 cut(s) 432, 689, 1347, 1489
PstI CTGCAG 1 cut(s) 847
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 4 cut(s) 682, 734, 1210, 1621
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 4 cut(s) 483, 492, 1522, 1543
RsaNI GTAC 4 cut(s) 482, 491, 1521, 1542
RseI CAYNNNNRTG 3 cut(s) 557, 605, 1401
SapI GCTCTTC 1 cut(s) 432
SatI GCNGC 4 cut(s) 161, 843, 981, 1614
Sau3AI GATC 5 cut(s) 191, 682, 734, 1210, 1621
Sau96I GGNCC 4 cut(s) 432, 689, 1347, 1489
ScrFI CCNGG 7 cut(s) 621, 653, 680, 687, 693, 866, 1644
SduI GDGCHC 2 cut(s) 128, 832
SfaNI GCATC 4 cut(s) 830, 967, 1354, 1376
SfcI CTRYAG 2 cut(s) 843, 966
SfuI TTCGAA 1 cut(s) 1113
SinI GGWCC 3 cut(s) 432, 1347, 1489
SmiMI CAYNNNNRTG 3 cut(s) 557, 605, 1401
SmlI CTYRAG 2 cut(s) 515, 782
SmoI CTYRAG 2 cut(s) 515, 782
SphI GCATGC 1 cut(s) 1266
SsiI CCGC 3 cut(s) 85, 862, 1205
SspI AATATT 2 cut(s) 406, 938
SspMI CTAG 2 cut(s) 429, 740
StyD4I CCNGG 7 cut(s) 619, 651, 678, 685, 691, 864, 1642
StyI CCWWGG 3 cut(s) 60, 367, 428
TaaI ACNGT 3 cut(s) 970, 1387, 1423
TaiI ACGT 2 cut(s) 727, 1308
TaqI TCGA 4 cut(s) 832, 1113, 1287, 1456
TfiI GAWTC 3 cut(s) 571, 1426, 1639
TscAI CASTG 5 cut(s) 84, 247, 348, 948, 1428
TseFI GTSAC 3 cut(s) 467, 521, 907
TseI GCWGC 4 cut(s) 160, 842, 980, 1613
Tsp45I GTSAC 3 cut(s) 467, 521, 907
TspDTI ATGAA 8 cut(s) 324, 453, 584, 660, 1461, 1568, 1613, 1652
TspRI CASTG 5 cut(s) 84, 247, 348, 948, 1428
Van91I CCANNNNNTGG 3 cut(s) 500, 692, 1486
VpaK11BI GGWCC 3 cut(s) 432, 1347, 1489
VspI ATTAAT 1 cut(s) 566
XapI RAATTY 2 cut(s) 927, 1115
XceI RCATGY 4 cut(s) 562, 593, 1266, 1521
XcmI CCANNNNNNNNNTGG 2 cut(s) 144, 1357
XmaJI CCTAGG 1 cut(s) 428
XspI CTAG 2 cut(s) 429, 740
Zsp2I ATGCAT 1 cut(s) 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.