Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010536

Physical Location & Seq

Genomic Coordinates Forward (+)

18226828 .. 18227679

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24151.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAACTACCACAAGGTACTGAGCTATCTGTCAATTGATCTCTTATGGATCGGAAGAGATCGATGCTCAAACAAAAACGACAGGTTTAGTGCAAAGCTCAAAAACAGAGACGAAAATAATAGATACAAAAAGTGCATGTTAATTGAGCTGGCGGACAAAGCTGGAGAAGTTGTTGTGCTTCAAGTAATTGGGGAGGAGGTCGCCGGCGAACTCCGGAGGACGCCAGACGACGAAGGTGGTGTCGTCTTCGCCCCAAGAGACGATGTGGTCGGTAACCTGTTTTTCAGTGCTATTATTCTAGATGTTAAATCCTCTTTAGCTACTGATAATAACTTCCAGTTGCAATTTGCTCATAGACAGGCCAATATGGTGGCGCATAGGTTAGCAGATTATGGTCTACATTTCAATGTCCATTGTAACTGGTTCTCTATTGTTCCAGAGCTCATTCTGGATGCCATGATGTACGATCAGAATTGTATTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

162

Amino Acids

18.45

Weight (kDa)

5.69

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02852 FvH4_6g24151
rosa_chinensis	RchiOBHm_Chr1g0320561 RchiOBHm_Chr2g0122921 RchiOBHm_Chr4g0413301 RchiOBHm_Chr5g0038961 RchiOBHm_Chr5g0047711 RchiOBHm_Chr7g0239141
rosa_laevigata	RLG00000009889 RLG00000009893 RLG00000009896
rosa_multiflora	Rmu_sc0000472.1_g000002 Rmu_sc0004683.1_g000006 Rmu_sc0006568.1_g000001 Rmu_sc0039480.1_g000001
rosa_rugosa	Rorug01G0123700 Rorug04G0083500 Rorug05G0028500 Rorug05G0327000 Rorug07G0026600
rosa_samantha	Rh6CG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	397
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	2 cut(s)	18, 464
AgsI	TTSAA	2 cut(s)	182, 406
AluBI	AGCT	6 cut(s)	24, 97, 148, 161, 320, 442
AluI	AGCT	6 cut(s)	24, 97, 148, 161, 320, 442
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	2 cut(s)	102, 252
AlwI	GGATC	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	1 cut(s)	360
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AspLEI	GCGC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	102, 252
BfaI	CTAG	1 cut(s)	299
BmsI	GCATC	2 cut(s)	53, 442
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	337, 425
BseAI	TCCGGA	1 cut(s)	213
BseCI	ATCGAT	1 cut(s)	61
BseGI	GGATG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	2 cut(s)	337, 425
BseRI	GAGGAG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	362
BshVI	ATCGAT	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	204, 214
BsmAI	GTCTC	2 cut(s)	102, 252
BsmBI	CGTCTC	2 cut(s)	102, 252
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	37, 48, 58, 466
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	12
BspDI	ATCGAT	1 cut(s)	61
BspEI	TCCGGA	1 cut(s)	213
BspPI	GGATC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	337, 425
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	4 cut(s)	37, 48, 58, 466
BssNI	GRCGYC	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	150, 205
BstDEI	CTNAG	1 cut(s)	20
BstEII	GGTNACC	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	4 cut(s)	40, 51, 61, 469
BstMAI	GTCTC	2 cut(s)	102, 252
BstMBI	GATC	4 cut(s)	37, 48, 58, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	139
BstPI	GGTNACC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	370
Bsu15I	ATCGAT	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	362
BsuTUI	ATCGAT	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	150, 205
CfoI	GCGC	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	61
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	17, 463
CviAII	CATG	2 cut(s)	136, 457
CviJI	RGCY	7 cut(s)	24, 97, 148, 161, 320, 362, 442
CviKI_1	RGCY	7 cut(s)	24, 97, 148, 161, 320, 362, 442
CviQI	GTAC	2 cut(s)	17, 463
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	4 cut(s)	39, 50, 60, 468
DpnII	GATC	4 cut(s)	37, 48, 58, 466
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
Eco91I	GGTNACC	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	444
Esp3I	CGTCTC	2 cut(s)	102, 252
FaeI	CATG	2 cut(s)	139, 460
FaiI	YATR	7 cut(s)	46, 137, 354, 368, 378, 393, 458
FatI	CATG	2 cut(s)	135, 456
FblI	GTMKAC	1 cut(s)	397
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	444
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	2 cut(s)	204, 214
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	139, 460
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HpaII	CCGG	2 cut(s)	204, 214
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	2 cut(s)	53, 471
Hpy188III	TCNNGA	4 cut(s)	214, 299, 437, 449
Hpy8I	GTNNAC	1 cut(s)	398
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	92, 135, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	139, 460
HspAI	GCGC	1 cut(s)	374
Kpn2I	TCCGGA	1 cut(s)	213
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	37, 48, 58, 466
LweI	GCATC	2 cut(s)	53, 442
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	272, 416
MalI	GATC	4 cut(s)	39, 50, 60, 468
MboI	GATC	4 cut(s)	37, 48, 58, 466
MboII	GAAGA	2 cut(s)	66, 238
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	5 cut(s)	33, 141, 186, 344, 472
MnlI	CCTC	4 cut(s)	187, 190, 210, 322
MreI	CGCCGGCG	1 cut(s)	203
MroI	TCCGGA	1 cut(s)	213
MroNI	GCCGGC	1 cut(s)	203
MseI	TTAA	2 cut(s)	140, 306
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	2 cut(s)	204, 214
MunI	CAATTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	158
NaeI	GCCGGC	1 cut(s)	205
NdeII	GATC	4 cut(s)	37, 48, 58, 466
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	2 cut(s)	139, 460
NspI	RCATGY	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	444
PspEI	GGTNACC	1 cut(s)	272
RsaI	GTAC	2 cut(s)	18, 464
RsaNI	GTAC	2 cut(s)	17, 463
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	140, 306
Sau3AI	GATC	4 cut(s)	37, 48, 58, 466
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	53, 442
SgrAI	CRCCGGYG	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	405
Sse9I	AATT	5 cut(s)	33, 141, 186, 344, 472
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	444
TaqI	TCGA	1 cut(s)	61
TasI	AATT	5 cut(s)	33, 141, 186, 344, 472
Tru1I	TTAA	2 cut(s)	140, 306
Tru9I	TTAA	2 cut(s)	140, 306
TscAI	CASTG	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	292
XbaI	TCTAGA	1 cut(s)	298
XceI	RCATGY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	397
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.