RchiOBHm_Chr7g0239141

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010536
Physical Location & Seq
Reverse (-)
64609291 .. 64609743
453 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21428

Sequence Viewer

Length: 306 bp
ATGCAACTCTTGCAATCCATGCAGGTAGCAAGTGCAGTGATCGAAAGTGATTGTCAGGTTGCAGTCACAGCTATCACCAGTGAGCAGACTGACCTTTCTCAGCTCAGTGCTTTAATTGCTGAAGTTAAGGACTTATTCGTTTCAACTGCAGGTATTAGGTTAAGATTTGTTCGTAGACAGGCTAATACTGTAGCTCATCGACTTGCTAGTCAGGGTTTTGAGTCCAATATCAATCATGAGTGGTTTGTAAATGCTCCAGAAATCATCCTGGATGCCCTTATGTACGATTCCAATCGTATTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

101

Amino Acids

11.24

Weight (kDa)

5.15

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 1 - 71 6.1e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 207
Acc36I ACCTGC 2 cut(s) 13, 140
AccI GTMKAC 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 284
AgsI TTSAA 1 cut(s) 144
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 3 cut(s) 71, 103, 194
AluI AGCT 3 cut(s) 71, 103, 194
AsuHPI GGTGA 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 269
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 2 cut(s) 147, 189
BfuAI ACCTGC 2 cut(s) 13, 140
Bme1390I CCNGG 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 269
BseGI GGATG 2 cut(s) 264, 277
BseJI GATNNNNATC 1 cut(s) 291
BseMII CTCAG 2 cut(s) 113, 118
BseNI ACTGG 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 54
Bsp143I GATC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 112, 117
BspHI TCATGA 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 151
BspMI ACCTGC 2 cut(s) 13, 140
BsrI ACTGG 1 cut(s) 78
BssMI GATC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 190
BstAPI GCANNNNNTGC 2 cut(s) 10, 19
BstDEI CTNAG 2 cut(s) 99, 104
BstF5I GGATG 2 cut(s) 264, 277
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 4 cut(s) 10, 19, 68, 116
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 2 cut(s) 147, 189
BtsCI GGATG 2 cut(s) 264, 277
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 3 cut(s) 42, 85, 112
BveI ACCTGC 2 cut(s) 13, 140
CciI TCATGA 1 cut(s) 235
Csp6I GTAC 1 cut(s) 283
CviAII CATG 2 cut(s) 19, 236
CviJI RGCY 4 cut(s) 71, 103, 182, 194
CviKI_1 RGCY 4 cut(s) 71, 103, 182, 194
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 2 cut(s) 99, 104
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DrdI GACNNNNNNGTC 1 cut(s) 207
DseDI GACNNNNNNGTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 267
FaeI CATG 2 cut(s) 22, 239
FaiI YATR 3 cut(s) 20, 237, 281
FatI CATG 2 cut(s) 18, 235
FblI GTMKAC 1 cut(s) 175
FokI GGATG 2 cut(s) 251, 284
FspBI CTAG 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 240
Hin1II CATG 2 cut(s) 22, 239
HinfI GANTC 2 cut(s) 221, 287
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 236, 257
Hpy8I GTNNAC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 6 cut(s) 4, 13, 22, 35, 62, 149
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 19, 68, 116
HpyF3I CTNAG 2 cut(s) 99, 104
Hsp92II CATG 2 cut(s) 22, 239
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 9 cut(s) 8, 41, 91, 135, 164, 197, 254, 270, 281
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MluCI AATT 1 cut(s) 114
MlyI GAGTC 1 cut(s) 230
MseI TTAA 4 cut(s) 113, 126, 161, 304
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 4 cut(s) 10, 19, 68, 116
NdeII GATC 1 cut(s) 39
NlaIII CATG 2 cut(s) 22, 239
NmuCI GTSAC 1 cut(s) 64
PagI TCATGA 1 cut(s) 235
PfeI GAWTC 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 267
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PstI CTGCAG 1 cut(s) 151
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SaqAI TTAA 4 cut(s) 113, 126, 161, 304
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 269
SetI ASST 8 cut(s) 27, 60, 73, 96, 105, 154, 161, 196
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 2 cut(s) 147, 189
Sse9I AATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 42, 199
TasI AATT 1 cut(s) 114
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 4 cut(s) 113, 126, 161, 304
Tru9I TTAA 4 cut(s) 113, 126, 161, 304
TscAI CASTG 3 cut(s) 42, 85, 112
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 3 cut(s) 42, 85, 112
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.