Rh6CG170400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010536
Physical Location & Seq
Reverse (-)
23465838 .. 23466137
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG170400.1

Sequence Viewer

Length: 300 bp
ATGCCTAGCGACGTTCGCCGTCAATATTTTGGTTTGGAGGACAGTATCTCCCTGGGTGAGAAGAAGTCTTCTTTGAAATCAATTACGGGTTCCGGCAGATCGATCTCTTCCTGGGTGGGGTCATCTGGCGATTTCCAGTGCAGAGGAATCGGGGATTGGATCGAGTGTTTATCACCACCGGGCCGTTTCGTTCAGTGGGCAGCTACTTGTTCTGCAGAGAGGAGGCACCTTCGAAGGCGTGCACCTTTGGTGATCAAGATAGCATCAAGGTCGACGCGCGTCGGTCCTTTGCCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.91

Weight (kDa)

10.18

Isoelectric Point (pI)

73.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 225
AccI GTMKAC 1 cut(s) 272
AccII CGCG 2 cut(s) 277, 279
AclWI GGATC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 2 cut(s) 51, 110
AjuI GAANNNNNNNTTGG 2 cut(s) 139, 171
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw21I GWGCWC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 240
AlwI GGATC 1 cut(s) 167
AoxI GGCC 1 cut(s) 181
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 181, 284
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 68, 165, 262
AsuII TTCGAA 1 cut(s) 232
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 212
BceAI ACGGC 2 cut(s) 3, 168
BcgI CGANNNNNNTGC 4 cut(s) 130, 164, 252, 286
BciT130I CCWGG 2 cut(s) 53, 112
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 3 cut(s) 53, 112, 180
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 181, 284
BmiI GGNNCC 2 cut(s) 91, 227
BmrFI CCNGG 3 cut(s) 53, 112, 180
BmsI GCATC 1 cut(s) 272
BoxI GACNNNNGTC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 101
BsaJI CCNNGG 3 cut(s) 51, 52, 111
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 2 cut(s) 53, 112
BseCI ATCGAT 1 cut(s) 101
BseDI CCNNGG 3 cut(s) 51, 52, 111
BseLI CCNNNNNNNGG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 235
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 160
Bsh1236I CGCG 2 cut(s) 277, 279
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 225
BshVI ATCGAT 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 3 cut(s) 93, 179, 293
BslI CCNNNNNNNGG 1 cut(s) 117
BsnI GGCC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 4 cut(s) 98, 102, 159, 252
BspANI GGCC 1 cut(s) 183
BspDI ATCGAT 1 cut(s) 101
BspFNI CGCG 2 cut(s) 277, 279
BspLI GGNNCC 2 cut(s) 91, 227
BspMAI CTGCAG 1 cut(s) 217
BspPI GGATC 1 cut(s) 167
BspT104I TTCGAA 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 225
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 3 cut(s) 51, 52, 111
BssMI GATC 4 cut(s) 98, 102, 159, 252
Bst2UI CCWGG 2 cut(s) 53, 112
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 240
BstFNI CGCG 2 cut(s) 277, 279
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 4 cut(s) 101, 105, 162, 255
BstMBI GATC 4 cut(s) 98, 102, 159, 252
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 2 cut(s) 53, 112
BstPAI GACNNNNGTC 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 51, 110, 178
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 244
BstUI CGCG 2 cut(s) 277, 279
BstV1I GCAGC 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 101
BsuRI GGCC 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 101
BtsIMutI CAGTG 2 cut(s) 143, 200
Cac8I GCNNGC 1 cut(s) 240
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 181, 284
ClaI ATCGAT 1 cut(s) 101
CseI GACGC 2 cut(s) 268, 283
CviJI RGCY 2 cut(s) 183, 203
CviKI_1 RGCY 2 cut(s) 183, 203
DpnI GATC 4 cut(s) 100, 104, 161, 254
DpnII GATC 4 cut(s) 98, 102, 159, 252
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 51, 110
FbaI TGATCA 1 cut(s) 252
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 183
HapII CCGG 3 cut(s) 93, 179, 293
HgaI GACGC 2 cut(s) 268, 283
HhaI GCGC 1 cut(s) 279
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 1 cut(s) 147
HpaII CCGG 3 cut(s) 93, 179, 293
HphI GGTGA 3 cut(s) 68, 165, 262
Hpy166II GTNNAC 2 cut(s) 242, 273
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 2 cut(s) 242, 273
Hpy99I CGWCG 3 cut(s) 14, 277, 284
HpyAV CCTTC 2 cut(s) 228, 239
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 141, 215, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 12
HspAI GCGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 4 cut(s) 98, 102, 159, 252
LpnPI CCDG 8 cut(s) 38, 65, 97, 106, 111, 124, 149, 192
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 272
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 12
MalI GATC 4 cut(s) 100, 104, 161, 254
MboI GATC 4 cut(s) 98, 102, 159, 252
MboII GAAGA 3 cut(s) 60, 73, 99
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 81
MnlI CCTC 4 cut(s) 31, 137, 213, 216
MspI CCGG 3 cut(s) 93, 179, 293
MspR9I CCNGG 3 cut(s) 53, 112, 180
MvaI CCWGG 2 cut(s) 53, 112
MvnI CGCG 2 cut(s) 277, 279
MwoI GCNNNNNNNGC 1 cut(s) 15
NciI CCSGG 1 cut(s) 180
NdeII GATC 4 cut(s) 98, 102, 159, 252
NlaIV GGNNCC 2 cut(s) 91, 227
NspV TTCGAA 1 cut(s) 232
PasI CCCWGGG 1 cut(s) 52
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 51, 110
PspGI CCWGG 2 cut(s) 51, 110
PspN4I GGNNCC 2 cut(s) 91, 227
PspPI GGNCC 2 cut(s) 181, 284
PstI CTGCAG 1 cut(s) 217
SalI GTCGAC 1 cut(s) 271
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 4 cut(s) 98, 102, 159, 252
Sau96I GGNCC 2 cut(s) 181, 284
ScrFI CCNGG 3 cut(s) 53, 112, 180
SduI GDGCHC 1 cut(s) 244
SetI ASST 5 cut(s) 15, 205, 231, 247, 272
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 232
SinI GGWCC 1 cut(s) 284
Sse9I AATT 1 cut(s) 81
SspI AATATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 3 cut(s) 51, 110, 178
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 15
TaqI TCGA 4 cut(s) 101, 162, 232, 272
TaqII GACCGA 1 cut(s) 272
TasI AATT 1 cut(s) 81
TfiI GAWTC 1 cut(s) 147
TscAI CASTG 2 cut(s) 143, 200
TseI GCWGC 1 cut(s) 200
TspRI CASTG 2 cut(s) 143, 200
VneI GTGCAC 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.