Rorug07G0026600

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010536
Physical Location & Seq
Reverse (-)
1882230 .. 1883552
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0026600.1

Sequence Viewer

Length: 621 bp
ATGGCGGACAATTTGTTCAGCTTGTCACTTCCGGTAGGGTCAACCAAGGACCATCCGATTACATGTCCGATGGGTTCATTAGCCCCGCCTTTGGATAGTCTGAAGCTGCCTCCGATGCTTGTTTTCGTTGGGACGATCGACAACTTTAAGTCCACTCAGATGGAGTACTATGAGGCCATGAAGAAGGCTAACCAGGATGTGCAGCTTTTGAGTCTCCCTGAAATGGGTCATGGTTTTCATCTTGGGGCGAACATTGACCCACGCGCGACTGTCCCAATGGAAAGTCTTGTTTCTGAGATCGTAGAGTTCGTTAAGAAGCGTTTAAATGGTCTGCATATGATGTGGACCACAGTTAGATTGGCAGCGTGCGTGTTACTCACGCGCCAAAAATATGCCCGGATGCAGGCGGACCAAGATCCACAGAAGAGGCTTTCGATGATGAACGGAGATGTGAACTTGAACCCGGCCTCCATTTTTCTCCACAATGAAACAAATGTCAGAGATAAACCATCGATGCGCCTTACCAACGTCTCTGCTTCAAAGATTGGGCTTGGCGGCAATTTCGCCGATGTTGGATTTGGCGGGCTCAACTGGGGAGTCGAATTAATTAGTGTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

206

Amino Acids

22.69

Weight (kDa)

6.52

Isoelectric Point (pI)

22.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 3 - 80 5.1e-10 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 264, 266, 382
AciI CCGC 5 cut(s) 5, 86, 407, 555, 582
AclWI GGATC 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 4 cut(s) 91, 223, 224, 403
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 2 cut(s) 460, 540
AjnI CCWGG 1 cut(s) 192
AloI GAACNNNNNNTCC 3 cut(s) 31, 452, 484
AluBI AGCT 3 cut(s) 21, 106, 205
AluI AGCT 3 cut(s) 21, 106, 205
Alw26I GTCTC 2 cut(s) 218, 535
AlwI GGATC 1 cut(s) 410
AoxI GGCC 2 cut(s) 174, 465
ApeKI GCWGC 3 cut(s) 106, 202, 362
AseI ATTAAT 1 cut(s) 605
AspLEI GCGC 3 cut(s) 266, 384, 519
AspS9I GGNCC 3 cut(s) 49, 345, 409
AsuC2I CCSGG 2 cut(s) 397, 464
AvaII GGWCC 3 cut(s) 49, 345, 409
BanII GRGCYC 1 cut(s) 588
BbvI GCAGC 3 cut(s) 93, 214, 374
BccI CCATC 4 cut(s) 60, 64, 154, 517
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 2 cut(s) 397, 464
BcoDI GTCTC 2 cut(s) 218, 535
BisI GCNGC 4 cut(s) 107, 203, 363, 556
BlsI GCNGC 4 cut(s) 108, 204, 364, 557
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 3 cut(s) 194, 397, 464
Bme18I GGWCC 3 cut(s) 49, 345, 409
BmgT120I GGNCC 3 cut(s) 49, 345, 409
BmrFI CCNGG 3 cut(s) 194, 397, 464
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 3 cut(s) 105, 390, 504
BmuI ACTGGG 1 cut(s) 601
BpuMI CCSGG 2 cut(s) 397, 464
Bsa29I ATCGAT 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 223, 224, 403
Bse1I ACTGG 1 cut(s) 596
BseBI CCWGG 1 cut(s) 194
BseCI ATCGAT 1 cut(s) 512
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 3 cut(s) 52, 202, 405
BseLI CCNNNNNNNGG 4 cut(s) 91, 223, 224, 403
BseMII CTCAG 2 cut(s) 170, 285
BseNI ACTGG 1 cut(s) 596
BseXI GCAGC 3 cut(s) 93, 214, 374
BsgI GTGCAG 1 cut(s) 221
Bsh1236I CGCG 3 cut(s) 264, 266, 382
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 176, 467
BshVI ATCGAT 1 cut(s) 512
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 3 cut(s) 32, 397, 464
BslFI GGGAC 2 cut(s) 145, 257
BslI CCNNNNNNNGG 4 cut(s) 91, 223, 224, 403
BsmAI GTCTC 2 cut(s) 218, 535
BsmBI CGTCTC 1 cut(s) 535
BsmFI GGGAC 2 cut(s) 145, 257
BsnI GGCC 2 cut(s) 176, 467
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 3 cut(s) 135, 297, 415
BspACI CCGC 5 cut(s) 5, 86, 407, 555, 582
BspANI GGCC 2 cut(s) 176, 467
BspCNI CTCAG 2 cut(s) 169, 286
BspDI ATCGAT 1 cut(s) 512
BspFNI CGCG 3 cut(s) 264, 266, 382
BspPI GGATC 1 cut(s) 410
BsrI ACTGG 1 cut(s) 596
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 3 cut(s) 135, 297, 415
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 271, 352
Bst6I CTCTTC 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 367, 405, 584
BstDEI CTNAG 2 cut(s) 156, 294
BstF5I GGATG 3 cut(s) 52, 202, 405
BstFNI CGCG 3 cut(s) 264, 266, 382
BstHHI GCGC 3 cut(s) 266, 384, 519
BstKTI GATC 3 cut(s) 138, 300, 418
BstMAI GTCTC 2 cut(s) 218, 535
BstMBI GATC 3 cut(s) 135, 297, 415
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 66
BstSCI CCNGG 3 cut(s) 192, 395, 462
BstUI CGCG 3 cut(s) 264, 266, 382
BstV1I GCAGC 3 cut(s) 93, 214, 374
BstX2I RGATCY 1 cut(s) 415
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 512
BsuRI GGCC 2 cut(s) 176, 467
BsuTUI ATCGAT 1 cut(s) 512
BtsCI GGATG 3 cut(s) 52, 202, 405
Cac8I GCNNGC 3 cut(s) 367, 405, 584
CfoI GCGC 3 cut(s) 266, 384, 519
Cfr13I GGNCC 3 cut(s) 49, 345, 409
ClaI ATCGAT 1 cut(s) 512
Csp6I GTAC 1 cut(s) 166
CviAII CATG 3 cut(s) 63, 178, 230
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 156, 294
DpnI GATC 3 cut(s) 137, 299, 417
DpnII GATC 3 cut(s) 135, 297, 415
DraI TTTAAA 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
EciI GGCGGA 2 cut(s) 20, 422
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 588
Eco47I GGWCC 3 cut(s) 49, 345, 409
Eco57I CTGAAG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 535
FaeI CATG 3 cut(s) 66, 181, 233
FaiI YATR 7 cut(s) 64, 171, 179, 231, 336, 338, 393
FaqI GGGAC 2 cut(s) 145, 257
FatI CATG 3 cut(s) 62, 177, 229
FauI CCCGC 2 cut(s) 93, 575
FauNDI CATATG 1 cut(s) 336
Fnu4HI GCNGC 4 cut(s) 107, 203, 363, 556
FokI GGATG 3 cut(s) 39, 209, 412
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 4 cut(s) 107, 203, 363, 556
GlaI GCGC 3 cut(s) 265, 383, 518
GluI GCNGC 4 cut(s) 107, 203, 363, 556
HaeIII GGCC 2 cut(s) 176, 467
HapII CCGG 3 cut(s) 32, 397, 464
HhaI GCGC 3 cut(s) 266, 384, 519
Hin1II CATG 3 cut(s) 66, 181, 233
Hin6I GCGC 3 cut(s) 264, 382, 517
HinP1I GCGC 3 cut(s) 264, 382, 517
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 2 cut(s) 211, 597
HpaII CCGG 3 cut(s) 32, 397, 464
Hpy166II GTNNAC 4 cut(s) 42, 153, 345, 454
Hpy188I TCNGA 7 cut(s) 57, 69, 102, 114, 159, 295, 500
Hpy8I GTNNAC 4 cut(s) 42, 153, 345, 454
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 271, 352
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 3 cut(s) 202, 334, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 156, 294
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 3 cut(s) 66, 181, 233
HspAI GCGC 3 cut(s) 264, 382, 517
Kzo9I GATC 3 cut(s) 135, 297, 415
LpnPI CCDG 8 cut(s) 45, 179, 206, 231, 389, 410, 477, 577
Lsp1109I GCAGC 3 cut(s) 93, 214, 374
LweI GCATC 3 cut(s) 105, 390, 504
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 2 cut(s) 24, 372
MalI GATC 3 cut(s) 137, 299, 417
MboI GATC 3 cut(s) 135, 297, 415
MboII GAAGA 2 cut(s) 193, 436
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 4 cut(s) 10, 559, 602, 606
MlyI GAGTC 2 cut(s) 220, 606
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 4 cut(s) 120, 166, 420, 478
MseI TTAA 4 cut(s) 147, 312, 323, 605
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 3 cut(s) 32, 397, 464
MspR9I CCNGG 3 cut(s) 194, 397, 464
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 3 cut(s) 264, 266, 382
MwoI GCNNNNNNNGC 1 cut(s) 115
NciI CCSGG 2 cut(s) 397, 464
NdeI CATATG 1 cut(s) 336
NdeII GATC 3 cut(s) 135, 297, 415
NlaIII CATG 3 cut(s) 66, 181, 233
NmuCI GTSAC 1 cut(s) 24
NspI RCATGY 1 cut(s) 66
PciI ACATGT 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PkrI GCNGC 4 cut(s) 108, 204, 364, 557
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 2 cut(s) 219, 605
PpsI GAGTC 2 cut(s) 219, 605
PscI ACATGT 1 cut(s) 62
PshBI ATTAAT 1 cut(s) 605
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspPI GGNCC 3 cut(s) 49, 345, 409
PsuI RGATCY 1 cut(s) 415
PvuI CGATCG 1 cut(s) 138
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 4 cut(s) 147, 312, 323, 605
SatI GCNGC 4 cut(s) 107, 203, 363, 556
Sau3AI GATC 3 cut(s) 135, 297, 415
Sau96I GGNCC 3 cut(s) 49, 345, 409
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 2 cut(s) 220, 606
ScrFI CCNGG 3 cut(s) 194, 397, 464
SduI GDGCHC 1 cut(s) 588
SetI ASST 4 cut(s) 23, 108, 207, 531
SfaNI GCATC 3 cut(s) 105, 390, 504
SinI GGWCC 3 cut(s) 49, 345, 409
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 4 cut(s) 10, 559, 602, 606
SsiI CCGC 5 cut(s) 5, 86, 407, 555, 582
StyD4I CCNGG 3 cut(s) 192, 395, 462
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 271, 352
TaiI ACGT 1 cut(s) 531
TaqI TCGA 5 cut(s) 138, 434, 512, 600, 615
TasI AATT 4 cut(s) 10, 559, 602, 606
TatI WGTACW 1 cut(s) 165
TauI GCSGC 1 cut(s) 558
Tru1I TTAA 4 cut(s) 147, 312, 323, 605
Tru9I TTAA 4 cut(s) 147, 312, 323, 605
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 3 cut(s) 106, 202, 362
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 5 cut(s) 66, 194, 227, 455, 501
TspGWI ACGGA 1 cut(s) 459
VpaK11BI GGWCC 3 cut(s) 49, 345, 409
VspI ATTAAT 1 cut(s) 605
XceI RCATGY 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.