Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010536

Physical Location & Seq

Genomic Coordinates Forward (+)

59613816 .. 59614920

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009889

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCCGATGCCACGTCCTTCGTTGAAGTCATTGCAAGTTGGGTTCGGATTGGAGGCCAAAATCAACCCATTCGCATTGATCTGGACACCAAATGTCCAACTACGCTATGCCATAAACTCCGGCAGCACTGGCGACGAAGTCAACCCGACTGTAAAAACTGCACCTCCATAGTACAGACCACCGCCATCATTATCAAGAATAGGCATCTGAAAGTGGAGCCTCCACCGATCCGGCCACTACCACGACTCAAGCGAAACCTCTCTCCACTTAGGGTTTCGAGTGTAGCAGCAGCGCCACCATCCCGGTTGGTTTCTGTCGTGCCTAGCGACGTTCGCCGTCGAGATTCTGGTTTGGAGGACTGCGTCTCCCTGGGCGAGAAGAAGTCTTCTTTGAAATCGATTCTTGGTTCCGGCATATCGATCTCTTCCTGGGTCGGCTCATCTGCTGATTTCCAGTGCAAAGGAATCGGGGCTCGGATTGGGTGTTTATCACCGCCGACACCGAGTTGTTCAGTGGGGCAGCTGCTGCAGAGAGGAGGCACCTTCGCAGGCGTGCACCTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.39

Weight (kDa)

10.08

Isoelectric Point (pI)

59.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02852 FvH4_6g24151
rosa_chinensis	RchiOBHm_Chr1g0320561 RchiOBHm_Chr2g0122921 RchiOBHm_Chr4g0413301 RchiOBHm_Chr5g0038961 RchiOBHm_Chr5g0047711 RchiOBHm_Chr7g0239141
rosa_laevigata	RLG00000009889 RLG00000009893 RLG00000009896
rosa_multiflora	Rmu_sc0000472.1_g000002 Rmu_sc0004683.1_g000006 Rmu_sc0006568.1_g000001 Rmu_sc0039480.1_g000001
rosa_rugosa	Rorug01G0123700 Rorug04G0083500 Rorug05G0028500 Rorug05G0327000 Rorug07G0026600
rosa_samantha	Rh6CG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AciI	CCGC	2 cut(s)	183, 494
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	233
AfaI	GTAC	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	26, 394
AjiI	CACGTC	1 cut(s)	15
AjnI	CCWGG	2 cut(s)	369, 428
AluBI	AGCT	1 cut(s)	523
AluI	AGCT	1 cut(s)	523
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	1 cut(s)	370
Alw44I	GTGCAC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	526
AoxI	GGCC	2 cut(s)	55, 233
ApaLI	GTGCAC	1 cut(s)	554
ApeKI	GCWGC	6 cut(s)	124, 287, 290, 520, 523, 526
AspLEI	GCGC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	483
BaeGI	GKGCMC	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	6 cut(s)	136, 299, 302, 510, 513, 532
BccI	CCATC	2 cut(s)	194, 307
BceAI	ACGGC	1 cut(s)	321
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BciT130I	CCWGG	2 cut(s)	371, 430
BcnI	CCSGG	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	527
BfoI	RGCGCY	1 cut(s)	296
BisI	GCNGC	6 cut(s)	125, 288, 291, 521, 524, 527
BlsI	GCNGC	6 cut(s)	126, 289, 292, 522, 525, 528
Bme1390I	CCNGG	3 cut(s)	304, 371, 430
BmgBI	CACGTC	1 cut(s)	15
BmiI	GGNNCC	3 cut(s)	219, 409, 541
BmrFI	CCNGG	3 cut(s)	304, 371, 430
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	304
Bsa29I	ATCGAT	2 cut(s)	398, 419
BsaJI	CCNNGG	3 cut(s)	369, 370, 429
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 350, 380
Bse1I	ACTGG	2 cut(s)	134, 454
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	2 cut(s)	371, 430
BseCI	ATCGAT	2 cut(s)	398, 419
BseDI	CCNNGG	3 cut(s)	369, 370, 429
BseGI	GGATG	1 cut(s)	299
BseMI	GCAATG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	134, 454
BseRI	GAGGAG	1 cut(s)	549
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	6 cut(s)	136, 299, 302, 510, 513, 532
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	57, 235
BshNI	GGYRCC	1 cut(s)	539
BshVI	ATCGAT	2 cut(s)	398, 419
BsiHKAI	GWGCWC	1 cut(s)	558
BsiSI	CCGG	4 cut(s)	121, 232, 304, 411
BsmAI	GTCTC	1 cut(s)	370
BsmBI	CGTCTC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	57, 235
Bsp1286I	GDGCHC	2 cut(s)	475, 558
Bsp143I	GATC	3 cut(s)	79, 228, 420
BspACI	CCGC	2 cut(s)	183, 494
BspANI	GGCC	2 cut(s)	57, 235
BspDI	ATCGAT	2 cut(s)	398, 419
BspLI	GGNNCC	3 cut(s)	219, 409, 541
BspMAI	CTGCAG	1 cut(s)	531
BspPI	GGATC	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	134, 454
BssECI	CCNNGG	3 cut(s)	369, 370, 429
BssMI	GATC	3 cut(s)	79, 228, 420
Bst2UI	CCWGG	2 cut(s)	371, 430
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	550, 554
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	3 cut(s)	82, 231, 423
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	79, 228, 420
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 333, 526
BstNI	CCWGG	2 cut(s)	371, 430
BstSCI	CCNGG	3 cut(s)	302, 369, 428
BstSFI	CTRYAG	1 cut(s)	527
BstSLI	GKGCMC	1 cut(s)	558
BstV1I	GCAGC	6 cut(s)	136, 299, 302, 510, 513, 532
BstV2I	GAAGAC	1 cut(s)	378
Bsu15I	ATCGAT	2 cut(s)	398, 419
BsuRI	GGCC	2 cut(s)	57, 235
BsuTUI	ATCGAT	2 cut(s)	398, 419
BtrI	CACGTC	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	3 cut(s)	127, 461, 519
Cac8I	GCNNGC	2 cut(s)	550, 554
CaiI	CAGNNNCTG	1 cut(s)	526
CfoI	GCGC	1 cut(s)	295
ClaI	ATCGAT	2 cut(s)	398, 419
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	173
CviJI	RGCY	6 cut(s)	57, 220, 235, 438, 473, 523
CviKI_1	RGCY	6 cut(s)	57, 220, 235, 438, 473, 523
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	3 cut(s)	81, 230, 422
DpnII	GATC	3 cut(s)	79, 228, 420
EaeI	YGGCCR	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	475
EcoRII	CCWGG	2 cut(s)	369, 428
EcoT38I	GRGCYC	1 cut(s)	475
Esp3I	CGTCTC	1 cut(s)	370
FaiI	YATR	4 cut(s)	109, 114, 170, 416
Fnu4HI	GCNGC	6 cut(s)	125, 288, 291, 521, 524, 527
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	6 cut(s)	125, 288, 291, 521, 524, 527
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	6 cut(s)	125, 288, 291, 521, 524, 527
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	57, 235
HapII	CCGG	4 cut(s)	121, 232, 304, 411
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HinfI	GANTC	4 cut(s)	246, 344, 400, 465
HpaII	CCGG	4 cut(s)	121, 232, 304, 411
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	2 cut(s)	143, 556
Hpy188I	TCNGA	4 cut(s)	7, 48, 210, 477
Hpy188III	TCNNGA	3 cut(s)	83, 196, 341
Hpy8I	GTNNAC	2 cut(s)	143, 556
Hpy99I	CGWCG	3 cut(s)	138, 332, 342
HpyAV	CCTTC	2 cut(s)	28, 553
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	14, 330
HpyCH4V	TGCA	5 cut(s)	35, 162, 459, 529, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 333, 526
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	2 cut(s)	14, 330
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	3 cut(s)	79, 228, 420
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	6 cut(s)	136, 299, 302, 510, 513, 532
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	14, 330
MalI	GATC	3 cut(s)	81, 230, 422
MboI	GATC	3 cut(s)	79, 228, 420
MboII	GAAGA	3 cut(s)	378, 391, 417
MhlI	GDGCHC	2 cut(s)	475, 558
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	7 cut(s)	47, 175, 231, 269, 349, 527, 530
MspA1I	CMGCKG	1 cut(s)	523
MspI	CCGG	4 cut(s)	121, 232, 304, 411
MspR9I	CCNGG	3 cut(s)	304, 371, 430
MvaI	CCWGG	2 cut(s)	371, 430
MwoI	GCNNNNNNNGC	3 cut(s)	130, 333, 526
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	79, 228, 420
NlaIV	GGNNCC	3 cut(s)	219, 409, 541
PasI	CCCWGGG	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	2 cut(s)	250, 324
PfeI	GAWTC	3 cut(s)	344, 400, 465
PflFI	GACNNNGTC	2 cut(s)	138, 362
PkrI	GCNGC	6 cut(s)	126, 289, 292, 522, 525, 528
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	369, 428
PspGI	CCWGG	2 cut(s)	369, 428
PspN4I	GGNNCC	3 cut(s)	219, 409, 541
PstI	CTGCAG	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	526
PsyI	GACNNNGTC	2 cut(s)	138, 362
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SatI	GCNGC	6 cut(s)	125, 288, 291, 521, 524, 527
Sau3AI	GATC	3 cut(s)	79, 228, 420
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	3 cut(s)	304, 371, 430
SduI	GDGCHC	2 cut(s)	475, 558
SetI	ASST	7 cut(s)	17, 167, 261, 333, 525, 545, 561
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SsiI	CCGC	2 cut(s)	183, 494
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	302, 369, 428
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	2 cut(s)	17, 333
TaqI	TCGA	4 cut(s)	278, 340, 398, 419
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	3 cut(s)	344, 400, 465
TscAI	CASTG	3 cut(s)	134, 461, 519
TseI	GCWGC	6 cut(s)	124, 287, 290, 520, 523, 526
TspRI	CASTG	3 cut(s)	134, 461, 519
Tth111I	GACNNNGTC	2 cut(s)	138, 362
VneI	GTGCAC	1 cut(s)	554
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.