Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006568.1

Orthogroup ID

OG0010536

Physical Location & Seq

Genomic Coordinates Reverse (-)

1793 .. 2146

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006568.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggagtttggtagctccccgctccacgtcgagttacttgccaagcatggattggagttgctacaggctatacagatcacacgagctgtcgtggagagtgactgtttgtttgcagtgcaggctataagctcaatagttgtggacctctctcctttgagtgccttgatcacagacctcaagtctctactagctgcaagtacggagtttaagctatgttttgtccctagacaggctaatattgtcgcacatagactcgctagttttagttatgagaccaatgtccatgttgattggtttgttaatgcttcagagttcatcttggatgccctcatgtacgattctattcgtatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

117

Amino Acids

12.93

Weight (kDa)

4.96

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02852 FvH4_6g24151
rosa_chinensis	RchiOBHm_Chr1g0320561 RchiOBHm_Chr2g0122921 RchiOBHm_Chr4g0413301 RchiOBHm_Chr5g0038961 RchiOBHm_Chr5g0047711 RchiOBHm_Chr7g0239141
rosa_laevigata	RLG00000009889 RLG00000009893 RLG00000009896
rosa_multiflora	Rmu_sc0000472.1_g000002 Rmu_sc0004683.1_g000006 Rmu_sc0006568.1_g000001 Rmu_sc0039480.1_g000001
rosa_rugosa	Rorug01G0123700 Rorug04G0083500 Rorug05G0028500 Rorug05G0327000 Rorug07G0026600
rosa_samantha	Rh6CG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	2 cut(s)	199, 335
AfiI	CCNNNNNNNGG	1 cut(s)	229
AhdI	GACNNNNNGTC	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	5 cut(s)	15, 86, 129, 191, 211
AluI	AGCT	5 cut(s)	15, 86, 129, 191, 211
Alw26I	GTCTC	2 cut(s)	186, 266
ApeKI	GCWGC	1 cut(s)	191
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	178
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	186, 266
BfaI	CTAG	4 cut(s)	188, 225, 258, 352
BfmI	CTRYAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	142
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	142
BmsI	GCATC	1 cut(s)	313
BoxI	GACNNNNGTC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	2 cut(s)	186, 266
BsmFI	GGGAC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	75, 165
BspACI	CCGC	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	22
BssMI	GATC	2 cut(s)	75, 165
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	2 cut(s)	78, 168
BstMAI	GTCTC	2 cut(s)	186, 266
BstMBI	GATC	2 cut(s)	75, 165
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	198, 334
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	3 cut(s)	47, 284, 331
CviJI	RGCY	8 cut(s)	15, 68, 86, 122, 129, 191, 211, 233
CviKI_1	RGCY	8 cut(s)	15, 68, 86, 122, 129, 191, 211, 233
CviQI	GTAC	2 cut(s)	198, 334
DpnI	GATC	2 cut(s)	77, 167
DpnII	GATC	2 cut(s)	75, 165
DriI	GACNNNNNGTC	1 cut(s)	178
Eam1105I	GACNNNNNGTC	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	291
FaeI	CATG	3 cut(s)	50, 287, 334
FaiI	YATR	8 cut(s)	48, 71, 125, 214, 249, 270, 285, 332
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	3 cut(s)	46, 283, 330
FauI	CCCGC	1 cut(s)	27
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	4 cut(s)	188, 225, 258, 352
GluI	GCNGC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	50, 287, 334
HinfI	GANTC	2 cut(s)	252, 338
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	310
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	113, 118, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	50, 287, 334
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	75, 165
LmnI	GCTCC	2 cut(s)	20, 27
LpnPI	CCDG	3 cut(s)	50, 104, 215
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	4 cut(s)	188, 225, 258, 352
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	33, 98
MalI	GATC	2 cut(s)	77, 167
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	2 cut(s)	75, 165
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	3 cut(s)	155, 185, 338
MseI	TTAA	2 cut(s)	207, 300
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	75, 165
NlaIII	CATG	3 cut(s)	50, 287, 334
NmuCI	GTSAC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PshAI	GACNNNNGTC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	142
RsaI	GTAC	2 cut(s)	199, 335
RsaNI	GTAC	2 cut(s)	198, 334
SaqAI	TTAA	2 cut(s)	207, 300
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	75, 165
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	246
SetI	ASST	8 cut(s)	17, 30, 88, 131, 147, 177, 193, 213
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	1 cut(s)	20
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	4 cut(s)	188, 225, 258, 352
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	207, 300
Tru9I	TTAA	2 cut(s)	207, 300
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XspI	CTAG	4 cut(s)	188, 225, 258, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.