Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039480.1

Orthogroup ID

OG0010536

Physical Location & Seq

Genomic Coordinates Reverse (-)

146 .. 2134

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039480.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggtatcagagcgggttacccatgtgtgcatgcctaacggccacacgggctccacgtcacccaaagttggcctatcagctgtacaggccatcaactcgatggttgaggacatgtctgacttaggagatctgatttctgaaattaaaggcattatggctgcagtgggggaggttaatgttagctttgcacctaggcaaactaacatggttgctcaccgtttagctaataatagttttgagactgattgtcatcttaagtggtttactcatgctccagatctagcagcggcgctaccatcccagctggtttccgtcgtgcctagcgacgttcgtcgtcgagattctggtttggaggactgcgtctccctaggcgagaagaagtcttctttgaaatcgattccgggtttcggcagatcgatctcttcctgggtcggtgggctagctgctgcagagaggaggcaccttcgaaggcatgcacctctggtaattaagaagcatcaaggtcaacatgcgtcggtcttttgccggattgatgggatggtggaacggcaaggctccggagggatagatggcggtagaggaagcctggccaatggaggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

21.23

Weight (kDa)

8.8

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02852 FvH4_6g24151
rosa_chinensis	RchiOBHm_Chr1g0320561 RchiOBHm_Chr2g0122921 RchiOBHm_Chr4g0413301 RchiOBHm_Chr5g0038961 RchiOBHm_Chr5g0047711 RchiOBHm_Chr7g0239141
rosa_laevigata	RLG00000009889 RLG00000009893 RLG00000009896
rosa_multiflora	Rmu_sc0000472.1_g000002 Rmu_sc0004683.1_g000006 Rmu_sc0006568.1_g000001 Rmu_sc0039480.1_g000001
rosa_rugosa	Rorug01G0123700 Rorug04G0083500 Rorug05G0028500 Rorug05G0327000 Rorug07G0026600
rosa_samantha	Rh6CG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	459
AccBSI	CCGCTC	1 cut(s)	13
AccIII	TCCGGA	1 cut(s)	557
AciI	CCGC	3 cut(s)	13, 287, 573
AcoI	YGGCCR	2 cut(s)	40, 588
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	68, 407
AflII	CTTAAG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	391
AhdI	GACNNNNNGTC	1 cut(s)	246
AjiI	CACGTC	1 cut(s)	57
AjnI	CCWGG	2 cut(s)	425, 585
AluBI	AGCT	5 cut(s)	80, 183, 224, 304, 443
AluI	AGCT	5 cut(s)	80, 183, 224, 304, 443
Alw26I	GTCTC	2 cut(s)	233, 367
Aor13HI	TCCGGA	1 cut(s)	557
AoxI	GGCC	4 cut(s)	40, 70, 87, 588
ApeKI	GCWGC	4 cut(s)	158, 284, 443, 446
AspA2I	CCTAGG	2 cut(s)	191, 367
AspLEI	GCGC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	51, 206
AsuII	TTCGAA	1 cut(s)	466
AsuNHI	GCTAGC	1 cut(s)	439
AvrII	CCTAGG	2 cut(s)	191, 367
BalI	TGGCCA	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	145, 296, 430, 433
BccI	CCATC	6 cut(s)	94, 98, 304, 527, 532, 563
BceAI	ACGGC	2 cut(s)	55, 563
BciT130I	CCWGG	2 cut(s)	427, 587
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	2 cut(s)	233, 367
BfaI	CTAG	5 cut(s)	192, 281, 321, 368, 440
BfmI	CTRYAG	2 cut(s)	159, 447
BfoI	RGCGCY	1 cut(s)	293
BfrI	CTTAAG	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	48
BglII	AGATCT	2 cut(s)	127, 277
BisI	GCNGC	5 cut(s)	159, 285, 288, 444, 447
BlnI	CCTAGG	2 cut(s)	191, 367
BlsI	GCNGC	5 cut(s)	160, 286, 289, 445, 448
Bme1390I	CCNGG	3 cut(s)	402, 427, 587
BmeRI	GACNNNNNGTC	1 cut(s)	246
BmgBI	CACGTC	1 cut(s)	57
BmiI	GGNNCC	3 cut(s)	52, 461, 556
BmrFI	CCNGG	3 cut(s)	402, 427, 587
BmsI	GCATC	1 cut(s)	505
BmtI	GCTAGC	1 cut(s)	443
BoxI	GACNNNNGTC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	466
BpuMI	CCSGG	1 cut(s)	402
Bsa29I	ATCGAT	2 cut(s)	395, 416
BsaBI	GATNNNNATC	1 cut(s)	249
BsaJI	CCNNGG	3 cut(s)	191, 367, 426
BsaWI	WCCGGW	1 cut(s)	557
BsaXI	ACNNNNNCTCC	6 cut(s)	35, 65, 256, 286, 347, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 407
Bse8I	GATNNNNATC	1 cut(s)	249
BseAI	TCCGGA	1 cut(s)	557
BseBI	CCWGG	2 cut(s)	427, 587
BseCI	ATCGAT	2 cut(s)	395, 416
BseDI	CCNNGG	3 cut(s)	191, 367, 426
BseGI	GGATG	2 cut(s)	296, 543
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	68, 407
BseRI	GAGGAG	1 cut(s)	469
BseXI	GCAGC	4 cut(s)	145, 296, 430, 433
BseYI	CCCAGC	1 cut(s)	300
BshFI	GGCC	4 cut(s)	42, 72, 89, 590
BshNI	GGYRCC	1 cut(s)	459
BshVI	ATCGAT	2 cut(s)	395, 416
BsiSI	CCGG	3 cut(s)	401, 526, 558
BslI	CCNNNNNNNGG	2 cut(s)	68, 407
BsmAI	GTCTC	2 cut(s)	233, 367
BsmBI	CGTCTC	1 cut(s)	367
BsnI	GGCC	4 cut(s)	42, 72, 89, 590
Bsp119I	TTCGAA	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	557
Bsp1407I	TGTACA	1 cut(s)	82
Bsp143I	GATC	4 cut(s)	127, 277, 413, 417
BspACI	CCGC	3 cut(s)	13, 287, 573
BspANI	GGCC	4 cut(s)	42, 72, 89, 590
BspDI	ATCGAT	2 cut(s)	395, 416
BspEI	TCCGGA	1 cut(s)	557
BspLI	GGNNCC	3 cut(s)	52, 461, 556
BspMAI	CTGCAG	2 cut(s)	163, 451
BspOI	GCTAGC	1 cut(s)	443
BspT104I	TTCGAA	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	459
BspTI	CTTAAG	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	191, 367, 426
BssMI	GATC	4 cut(s)	127, 277, 413, 417
BssT1I	CCWWGG	2 cut(s)	191, 367
Bst2UI	CCWGG	2 cut(s)	427, 587
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	427
BstAFI	CTTAAG	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	466
BstC8I	GCNNGC	3 cut(s)	32, 441, 474
BstDEI	CTNAG	1 cut(s)	121
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	296, 543
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	4 cut(s)	130, 280, 416, 420
BstMAI	GTCTC	2 cut(s)	233, 367
BstMBI	GATC	4 cut(s)	127, 277, 413, 417
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 86
BstNI	CCWGG	2 cut(s)	427, 587
BstNSI	RCATGY	4 cut(s)	34, 115, 476, 512
BstPAI	GACNNNNGTC	1 cut(s)	330
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	3 cut(s)	400, 425, 585
BstSFI	CTRYAG	2 cut(s)	159, 447
BstV1I	GCAGC	4 cut(s)	145, 296, 430, 433
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	2 cut(s)	127, 277
BstYI	RGATCY	2 cut(s)	127, 277
Bsu15I	ATCGAT	2 cut(s)	395, 416
BsuRI	GGCC	4 cut(s)	42, 72, 89, 590
BsuTUI	ATCGAT	2 cut(s)	395, 416
BtrI	CACGTC	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	296, 543
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	3 cut(s)	32, 441, 474
CfoI	GCGC	1 cut(s)	292
ClaI	ATCGAT	2 cut(s)	395, 416
CseI	GACGC	2 cut(s)	349, 501
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	7 cut(s)	23, 31, 112, 205, 269, 473, 509
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	121
DpnI	GATC	4 cut(s)	129, 279, 415, 419
DpnII	GATC	4 cut(s)	127, 277, 413, 417
DriI	GACNNNNNGTC	1 cut(s)	246
EaeI	YGGCCR	2 cut(s)	40, 588
Eam1104I	CTCTTC	1 cut(s)	427
Eam1105I	GACNNNNNGTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	427
Eco130I	CCWWGG	2 cut(s)	191, 367
Eco24I	GRGCYC	1 cut(s)	53
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	425, 585
EcoT14I	CCWWGG	2 cut(s)	191, 367
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	2 cut(s)	191, 367
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	7 cut(s)	26, 34, 115, 208, 272, 476, 512
FaiI	YATR	8 cut(s)	24, 32, 113, 155, 206, 270, 474, 510
FatI	CATG	7 cut(s)	22, 30, 111, 204, 268, 472, 508
FauI	CCCGC	1 cut(s)	6
Fnu4HI	GCNGC	5 cut(s)	159, 285, 288, 444, 447
FokI	GGATG	2 cut(s)	283, 550
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	5 cut(s)	159, 285, 288, 444, 447
FspBI	CTAG	5 cut(s)	192, 281, 321, 368, 440
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	5 cut(s)	159, 285, 288, 444, 447
GsaI	CCCAGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	4 cut(s)	42, 72, 89, 590
HapII	CCGG	3 cut(s)	401, 526, 558
HgaI	GACGC	2 cut(s)	349, 501
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	7 cut(s)	26, 34, 115, 208, 272, 476, 512
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	506
HindII	GTYRAC	1 cut(s)	506
HinfI	GANTC	2 cut(s)	341, 397
HpaII	CCGG	3 cut(s)	401, 526, 558
HphI	GGTGA	2 cut(s)	51, 206
Hpy166II	GTNNAC	2 cut(s)	264, 506
Hpy188I	TCNGA	4 cut(s)	10, 118, 132, 139
Hpy188III	TCNNGA	3 cut(s)	275, 338, 558
Hpy8I	GTNNAC	2 cut(s)	264, 506
Hpy99I	CGWCG	5 cut(s)	317, 329, 336, 339, 517
HpyAV	CCTTC	2 cut(s)	462, 473
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	2 cut(s)	56, 327
HpyCH4V	TGCA	5 cut(s)	30, 161, 188, 449, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 86
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	2 cut(s)	56, 327
Hsp92II	CATG	7 cut(s)	26, 34, 115, 208, 272, 476, 512
HspAI	GCGC	1 cut(s)	290
Kpn2I	TCCGGA	1 cut(s)	557
Kzo9I	GATC	4 cut(s)	127, 277, 413, 417
LmnI	GCTCC	3 cut(s)	56, 277, 560
Lsp1109I	GCAGC	4 cut(s)	145, 296, 430, 433
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	5 cut(s)	192, 281, 321, 368, 440
MaeII	ACGT	2 cut(s)	56, 327
MaeIII	GTNAC	2 cut(s)	16, 57
MalI	GATC	4 cut(s)	129, 279, 415, 419
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	4 cut(s)	127, 277, 413, 417
MboII	GAAGA	3 cut(s)	375, 388, 414
MflI	RGATCY	2 cut(s)	127, 277
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	2 cut(s)	141, 486
MluNI	TGGCCA	1 cut(s)	590
MnlI	CCTC	9 cut(s)	100, 163, 346, 447, 450, 489, 554, 572, 590
Mox20I	TGGCCA	1 cut(s)	590
MroI	TCCGGA	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	4 cut(s)	144, 174, 255, 489
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	3 cut(s)	80, 287, 304
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	3 cut(s)	401, 526, 558
MspR9I	CCNGG	3 cut(s)	402, 427, 587
MvaI	CCWGG	2 cut(s)	427, 587
MwoI	GCNNNNNNNGC	2 cut(s)	48, 86
NciI	CCSGG	1 cut(s)	402
NdeII	GATC	4 cut(s)	127, 277, 413, 417
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	7 cut(s)	26, 34, 115, 208, 272, 476, 512
NlaIV	GGNNCC	3 cut(s)	52, 461, 556
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	4 cut(s)	34, 115, 476, 512
NspV	TTCGAA	1 cut(s)	466
PaeI	GCATGC	2 cut(s)	34, 476
PciI	ACATGT	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 321
PfeI	GAWTC	2 cut(s)	341, 397
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	5 cut(s)	160, 286, 289, 445, 448
PscI	ACATGT	1 cut(s)	111
PshAI	GACNNNNGTC	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	425, 585
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	2 cut(s)	425, 585
PspN4I	GGNNCC	3 cut(s)	52, 461, 556
PstI	CTGCAG	2 cut(s)	163, 451
PsuI	RGATCY	2 cut(s)	127, 277
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	2 cut(s)	80, 304
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SaqAI	TTAA	4 cut(s)	144, 174, 255, 489
SatI	GCNGC	5 cut(s)	159, 285, 288, 444, 447
Sau3AI	GATC	4 cut(s)	127, 277, 413, 417
ScrFI	CCNGG	3 cut(s)	402, 427, 587
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	2 cut(s)	159, 447
SfuI	TTCGAA	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SphI	GCATGC	2 cut(s)	34, 476
Sse9I	AATT	2 cut(s)	141, 486
SsiI	CCGC	3 cut(s)	13, 287, 573
SspMI	CTAG	5 cut(s)	192, 281, 321, 368, 440
StyD4I	CCNGG	3 cut(s)	400, 425, 585
StyI	CCWWGG	2 cut(s)	191, 367
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	2 cut(s)	59, 330
TaqI	TCGA	5 cut(s)	98, 337, 395, 416, 466
TaqII	GACCGA	1 cut(s)	505
TasI	AATT	2 cut(s)	141, 486
TatI	WGTACW	1 cut(s)	82
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	341, 397
Tru1I	TTAA	4 cut(s)	144, 174, 255, 489
Tru9I	TTAA	4 cut(s)	144, 174, 255, 489
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	4 cut(s)	158, 284, 443, 446
Tsp45I	GTSAC	1 cut(s)	57
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	168
Tth111I	GACNNNGTC	1 cut(s)	359
Vha464I	CTTAAG	1 cut(s)	254
XceI	RCATGY	4 cut(s)	34, 115, 476, 512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmaJI	CCTAGG	2 cut(s)	191, 367
XspI	CTAG	5 cut(s)	192, 281, 321, 368, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.