Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004683.1

Orthogroup ID

OG0010536

Physical Location & Seq

Genomic Coordinates Forward (+)

56488 .. 58242

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004683.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgaagtttggactagaactcttacaagcactgaatgtcactaaggcaatcttggagagtgactgcctatcagctgtacaggccatcaactcgatggttgaggacatgtctgacttaggagatctgatttctgaaattaaaggcattatggctgcagtgggggaggttaatgttagctttgcacctaggcaaactaacatggttgctcaccgtttagctaataatagttttgagactgattgtcatcttaagtggtttactcatgctccagatctagcagcggcgctaccatcccagctggtttccgtcgtgcctagcgacgttcgtcgtcgagattctggtttggaggactgcgtctccctaggcgagaagaagtcttctttgaaatcgattccgggtttcggcagatcgatctcttcctgggtcgggtcatctgctgatttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

148

Amino Acids

15.9

Weight (kDa)

5.09

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010536)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02852 FvH4_6g24151
rosa_chinensis	RchiOBHm_Chr1g0320561 RchiOBHm_Chr2g0122921 RchiOBHm_Chr4g0413301 RchiOBHm_Chr5g0038961 RchiOBHm_Chr5g0047711 RchiOBHm_Chr7g0239141
rosa_laevigata	RLG00000009889 RLG00000009893 RLG00000009896
rosa_multiflora	Rmu_sc0000472.1_g000002 Rmu_sc0004683.1_g000006 Rmu_sc0006568.1_g000001 Rmu_sc0039480.1_g000001
rosa_rugosa	Rorug01G0123700 Rorug04G0083500 Rorug05G0028500 Rorug05G0327000 Rorug07G0026600
rosa_samantha	Rh6CG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	401, 426
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	385
AhdI	GACNNNNNGTC	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	4 cut(s)	74, 177, 218, 298
AluI	AGCT	4 cut(s)	74, 177, 218, 298
Alw26I	GTCTC	2 cut(s)	227, 361
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	152, 278
AspA2I	CCTAGG	2 cut(s)	185, 361
AspLEI	GCGC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	200
AvrII	CCTAGG	2 cut(s)	185, 361
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	139, 290
BccI	CCATC	3 cut(s)	88, 92, 298
BciT130I	CCWGG	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	227, 361
BfaI	CTAG	6 cut(s)	14, 186, 275, 315, 362, 445
BfmI	CTRYAG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	248
BglII	AGATCT	2 cut(s)	121, 271
BisI	GCNGC	3 cut(s)	153, 279, 282
BlnI	CCTAGG	2 cut(s)	185, 361
BlsI	GCNGC	3 cut(s)	154, 280, 283
Bme1390I	CCNGG	2 cut(s)	396, 421
BmeRI	GACNNNNNGTC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	396, 421
BoxI	GACNNNNGTC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	396
Bsa29I	ATCGAT	2 cut(s)	389, 410
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	185, 361, 420
BsaXI	ACNNNNNCTCC	4 cut(s)	250, 280, 341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 426
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	421
BseCI	ATCGAT	2 cut(s)	389, 410
BseDI	CCNNGG	3 cut(s)	185, 361, 420
BseGI	GGATG	1 cut(s)	290
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	401, 426
BseXI	GCAGC	2 cut(s)	139, 290
BseYI	CCCAGC	1 cut(s)	294
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	2 cut(s)	389, 410
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	401, 426
BsmAI	GTCTC	2 cut(s)	227, 361
BsmBI	CGTCTC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	121, 271, 407, 411
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	1 cut(s)	83
BspDI	ATCGAT	2 cut(s)	389, 410
BspMAI	CTGCAG	1 cut(s)	157
BspTI	CTTAAG	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	185, 361, 420
BssMI	GATC	4 cut(s)	121, 271, 407, 411
BssT1I	CCWWGG	2 cut(s)	185, 361
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	421
BstAFI	CTTAAG	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	42, 115
BstF5I	GGATG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	4 cut(s)	124, 274, 410, 414
BstMAI	GTCTC	2 cut(s)	227, 361
BstMBI	GATC	4 cut(s)	121, 271, 407, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	109
BstPAI	GACNNNNGTC	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	394, 419
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	139, 290
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	2 cut(s)	121, 271
BstYI	RGATCY	2 cut(s)	121, 271
Bsu15I	ATCGAT	2 cut(s)	389, 410
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	2 cut(s)	389, 410
BtsCI	GGATG	1 cut(s)	290
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	29, 162
CfoI	GCGC	1 cut(s)	286
ClaI	ATCGAT	2 cut(s)	389, 410
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	3 cut(s)	106, 199, 263
CviJI	RGCY	6 cut(s)	74, 83, 152, 177, 218, 298
CviKI_1	RGCY	6 cut(s)	74, 83, 152, 177, 218, 298
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	2 cut(s)	42, 115
DpnI	GATC	4 cut(s)	123, 273, 409, 413
DpnII	GATC	4 cut(s)	121, 271, 407, 411
DriI	GACNNNNNGTC	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	421
Eam1105I	GACNNNNNGTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	185, 361
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	2 cut(s)	185, 361
ErhI	CCWWGG	2 cut(s)	185, 361
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	3 cut(s)	109, 202, 266
FaiI	YATR	4 cut(s)	107, 149, 200, 264
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	3 cut(s)	105, 198, 262
Fnu4HI	GCNGC	3 cut(s)	153, 279, 282
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	153, 279, 282
FspBI	CTAG	6 cut(s)	14, 186, 275, 315, 362, 445
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	3 cut(s)	153, 279, 282
GsaI	CCCAGC	1 cut(s)	298
GsuI	CTGGAG	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	109, 202, 266
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	2 cut(s)	335, 391
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	3 cut(s)	112, 126, 133
Hpy188III	TCNNGA	2 cut(s)	269, 332
Hpy8I	GTNNAC	1 cut(s)	258
Hpy99I	CGWCG	4 cut(s)	311, 323, 330, 333
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	155, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	42, 115
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	109, 202, 266
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	4 cut(s)	121, 271, 407, 411
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	8 cut(s)	65, 282, 284, 308, 324, 406, 408, 433
Lsp1109I	GCAGC	2 cut(s)	139, 290
MaeI	CTAG	6 cut(s)	14, 186, 275, 315, 362, 445
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	37, 59
MalI	GATC	4 cut(s)	123, 273, 409, 413
MboI	GATC	4 cut(s)	121, 271, 407, 411
MboII	GAAGA	3 cut(s)	369, 382, 408
MflI	RGATCY	2 cut(s)	121, 271
MluCI	AATT	1 cut(s)	135
MnlI	CCTC	3 cut(s)	94, 157, 340
MseI	TTAA	3 cut(s)	138, 168, 249
MspA1I	CMGCKG	3 cut(s)	74, 281, 298
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	396, 421
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	4 cut(s)	121, 271, 407, 411
NlaIII	CATG	3 cut(s)	109, 202, 266
NmuCI	GTSAC	2 cut(s)	37, 59
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	335, 391
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	154, 280, 283
PscI	ACATGT	1 cut(s)	105
PshAI	GACNNNNGTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	121, 271
PsyI	GACNNNGTC	1 cut(s)	353
PvuII	CAGCTG	2 cut(s)	74, 298
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	138, 168, 249
SatI	GCNGC	3 cut(s)	153, 279, 282
Sau3AI	GATC	4 cut(s)	121, 271, 407, 411
ScrFI	CCNGG	2 cut(s)	396, 421
SetI	ASST	7 cut(s)	76, 168, 179, 187, 220, 300, 324
SfcI	CTRYAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	6 cut(s)	14, 186, 275, 315, 362, 445
StyD4I	CCNGG	2 cut(s)	394, 419
StyI	CCWWGG	2 cut(s)	185, 361
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	4 cut(s)	92, 331, 389, 410
TasI	AATT	1 cut(s)	135
TatI	WGTACW	1 cut(s)	76
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	335, 391
Tru1I	TTAA	3 cut(s)	138, 168, 249
Tru9I	TTAA	3 cut(s)	138, 168, 249
TscAI	CASTG	2 cut(s)	36, 162
TseFI	GTSAC	2 cut(s)	37, 59
TseI	GCWGC	2 cut(s)	152, 278
Tsp45I	GTSAC	2 cut(s)	37, 59
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	2 cut(s)	36, 162
Tth111I	GACNNNGTC	1 cut(s)	353
Vha464I	CTTAAG	1 cut(s)	248
XceI	RCATGY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmaJI	CCTAGG	2 cut(s)	185, 361
XspI	CTAG	6 cut(s)	14, 186, 275, 315, 362, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.