Rmu_sc0000472.1_g000002

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000472.1
OG0010536
Physical Location & Seq
Reverse (-)
9380 .. 9661
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000472.1_g000002.1.cds

Sequence Viewer

Length: 282 bp
atgcagattgcaaaagcagtggtggagagtgattgtttgacggcgatacaggccataacctctatagccgtggacctctcccctttgagtgccttgatcaccgagctccagtcgctacttgctgaccgcagggagatcagtctctgttttgtccctagacaggctaatgttgttgctcatcgtttagctactagctatgagtcaaaaattgattgtgattggtttgttcatgctccagaagttatcctggatgctctcatgtacgattctattcgtatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

93

Amino Acids

10.29

Weight (kDa)

4.71

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 160
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 106, 188, 195
AluI AGCT 3 cut(s) 106, 188, 195
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 144
AoxI GGCC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BceAI ACGGC 2 cut(s) 53, 57
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 3 cut(s) 156, 192, 280
BfmI CTRYAG 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 241
BpmI CTGGAG 2 cut(s) 92, 219
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 109
BshFI GGCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 96, 135
BspACI CCGC 1 cut(s) 127
BspANI GGCC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 96, 135
Bst2UI CCWGG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 2 cut(s) 99, 138
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 2 cut(s) 96, 135
BstMWI GCNNNNNNNGC 2 cut(s) 50, 112
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 63
BsuRI GGCC 1 cut(s) 53
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
CaiI CAGNNNCTG 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 262
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 2 cut(s) 230, 259
CviJI RGCY 6 cut(s) 53, 68, 106, 164, 188, 195
CviKI_1 RGCY 6 cut(s) 53, 68, 106, 164, 188, 195
CviQI GTAC 1 cut(s) 262
DpnI GATC 2 cut(s) 98, 137
DpnII GATC 2 cut(s) 96, 135
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 2 cut(s) 233, 262
FaiI YATR 5 cut(s) 56, 65, 198, 231, 260
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 229, 258
FbaI TGATCA 1 cut(s) 96
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 108
FspBI CTAG 3 cut(s) 156, 192, 280
GsuI CTGGAG 2 cut(s) 92, 219
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 2 cut(s) 233, 262
HinfI GANTC 2 cut(s) 200, 266
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 4, 11
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 112
Hsp92II CATG 2 cut(s) 233, 262
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 2 cut(s) 96, 135
LmnI GCTCC 2 cut(s) 111, 238
LpnPI CCDG 7 cut(s) 35, 115, 122, 146, 233, 249, 260
LweI GCATC 1 cut(s) 241
MaeI CTAG 3 cut(s) 156, 192, 280
MalI GATC 2 cut(s) 98, 137
MboI GATC 2 cut(s) 96, 135
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 207
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 2 cut(s) 70, 86
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 50, 112
NdeII GATC 2 cut(s) 96, 135
NlaIII CATG 2 cut(s) 233, 262
PfeI GAWTC 1 cut(s) 266
PfoI TCCNGGA 1 cut(s) 246
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspPI GGNCC 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 144
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 108
Sau3AI GATC 2 cut(s) 96, 135
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 108
SetI ASST 5 cut(s) 62, 78, 108, 190, 197
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 73
Sse9I AATT 1 cut(s) 207
SsiI CCGC 1 cut(s) 127
SspMI CTAG 3 cut(s) 156, 192, 280
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 246
TasI AATT 1 cut(s) 207
TfiI GAWTC 1 cut(s) 266
TscAI CASTG 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 218
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 73
XspI CTAG 3 cut(s) 156, 192, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.