Rorug05G0327000

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000079
Physical Location & Seq
Reverse (-)
39306175 .. 39313993
7819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0327000.1

Sequence Viewer

Length: 1611 bp
ATGACTAGGATTCTGGTTCAGCGAGGTTCCTCAAGTGGTTCTTCTTCCAACCCAAGCCGCTCTTCTTCCTTGTCTGGCTCTTCCTCAGCTTGGTCACAGCCACAGATTAATACTCCTCAGGTCCTCTCGGCTGTGAAAGATGAGGAGATTGAAGAGGAGCCACAGGAACATGTTATTGTGGATGATCCCTCTGAGAATTGTGGGAGTAGTGACAATAATGCCGTGAAAAATGATGATGTTTTGATGGAAAGCACTCATAATGATCACACTCTAAGTTCAAGTGATGAACTTACTGAAGTTGAGAGGGTTACTAAGAATGATATTGCCGGACAAGGGGAGTTGATGAAAGGTTTAGGCAGTTTGACAATATCTGAAAGGGTGAAAGTTGACAATGTGGACTCTGGTGGGGATACTTTACAAAATGTGATTGGGAGTTCACAGCCACCACCTCCTCCTGTTCCTCCCCCGAAAATTTCTTCACCAAACTCAAATTCAAGGAGAACTGTCACAGGAAGTTCAACTGCGGTCAGGATTGGACCTTCAAGAAGAGCAGTTGCCTGGCCAGTTGTTTCAACTAGGACGTCACCAACTGGGTCACGGCCTTCTTCTCCCAGGTCTCATGGTGAAGGCGAGGGGTACAATAGTGCCGATGAGCAAGGCCCTTGCTTTGTGTCCTCCTATGACGATATGGAAAGGGAACGGCAATTTGAAATTGATATTAGACGTGCAAAAGGGTTTGAAGTGAAAAGAATGCTGGAGGATGGCAATTGTCTGTTTCGTGCTGTTGCAGACCAGGTTTATGGGGATTCTGAAGCGTACGACTTGACCAGACAAATGTGCATAGATTATATGGAGCGAGAGAGGGATCATTTTTCTCAATTTATTACAGAAGGATTTACTTCTTATTGCAAGAGGAAAAGAAGAGACAAGGTCTACGGAAATAATGTGGAGATCCAGGCCTTATCTGAAATGTATAATCGGCCCATCCATATTTATTCCTATAGCATTGAACCTATCAATATCTTCCATGGAAGTTATAATACTGACACACCACCTGTACGGTTAAGTTACCACCATGGAAATCATTACAACTCTCTTGTTGATCCTCGCCGCTTGACCATTGGTGCAGGACTTGGGTTCAGCAGTCTTCGCGGGACGAATGCTGACAAGGATCAGGTCAAGGCTGCCATTAAGGCTCAACAAGACCAACAAATCGATAATGCACTTTTAGCTGAGGGGCGATTTTACTCGGATCTTGAGCTTACTGAGAAAGAAATGGAACGCATGGTGATGGAAGCTTCTAGGGCTGAGTATCTTGCAGATGGCACATTCAAGCAACAACTTGGCCGCAGAGAATCTTCTACTTCAAGCTGTGAGCCTTCATCTTCTGGAGCTAGATCATCAGGCAGTGAGACTAAGCCAGGGGGTAGAGACCAGGGTGGCCAGGATTCCACCTTAAGCAGTAGTATGCAAATTGTTCTGTCGATGGGATTCAGCTATCTGCAGGCCATCGAAGCTTACAGCATATTTGGAGATGACGTAGATTCCATGGTTTGTTACTTGTTGGAAACTAGCAGCAGTAGCAGGCGCAAAGGCAAGGCAACAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

536

Amino Acids

58.95

Weight (kDa)

5.13

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 254 - 363 3.7e-17 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1038
AatII GACGTC 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 933
AccII CGCG 1 cut(s) 1152
AciI CCGC 5 cut(s) 58, 524, 1111, 1152, 1348
AclWI GGATC 6 cut(s) 179, 873, 946, 1097, 1179, 1260
AcoI YGGCCR 3 cut(s) 560, 1345, 1441
AcsI RAATTY 2 cut(s) 471, 490
AcuI CTGAAG 2 cut(s) 315, 831
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 3 cut(s) 638, 818, 1059
AfiI CCNNNNNNNGG 2 cut(s) 90, 333
AflII CTTAAG 1 cut(s) 1456
AflIII ACRYGT 1 cut(s) 169
AjiI CACGTC 1 cut(s) 725
AjnI CCWGG 7 cut(s) 557, 611, 792, 954, 1420, 1434, 1443
AjuI GAANNNNNNNTTGG 4 cut(s) 46, 78, 475, 507
AluBI AGCT 8 cut(s) 89, 1232, 1261, 1298, 1371, 1394, 1497, 1517
AluI AGCT 8 cut(s) 89, 1232, 1261, 1298, 1371, 1394, 1497, 1517
Alw26I GTCTC 4 cut(s) 621, 918, 1406, 1425
AlwI GGATC 6 cut(s) 179, 873, 946, 1097, 1179, 1260
AoxI GGCC 8 cut(s) 560, 599, 658, 957, 980, 1345, 1441, 1506
ApeKI GCWGC 2 cut(s) 1184, 1575
ApoI RAATTY 2 cut(s) 471, 490
AseI ATTAAT 1 cut(s) 108
AspLEI GCGC 1 cut(s) 1590
AspS9I GGNCC 4 cut(s) 121, 536, 659, 981
AsuHPI GGTGA 5 cut(s) 391, 471, 576, 635, 1300
AvaII GGWCC 2 cut(s) 121, 536
AxyI CCTNAGG 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 628, 661
BalI TGGCCA 2 cut(s) 562, 1443
BarI GAAGNNNNNNTAC 2 cut(s) 1024, 1056
BbsI GAAGAC 1 cut(s) 1139
BbvCI CCTCAGC 2 cut(s) 85, 1233
BbvI GCAGC 2 cut(s) 1171, 1587
BccI CCATC 7 cut(s) 238, 755, 992, 1285, 1316, 1480, 1517
BceAI ACGGC 3 cut(s) 206, 614, 716
BciT130I CCWGG 7 cut(s) 559, 613, 794, 956, 1422, 1436, 1445
BciVI GTATCC 1 cut(s) 403
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 4 cut(s) 621, 918, 1406, 1425
BfaI CTAG 5 cut(s) 6, 576, 1302, 1395, 1572
BfmI CTRYAG 2 cut(s) 1000, 1502
BfrI CTTAAG 1 cut(s) 1456
BfuI GTATCC 1 cut(s) 403
BglI GCCNNNNNGGC 1 cut(s) 1193
BisI GCNGC 5 cut(s) 58, 1111, 1185, 1348, 1576
BlsI GCNGC 5 cut(s) 59, 1112, 1186, 1349, 1577
Bme1390I CCNGG 7 cut(s) 559, 613, 794, 956, 1422, 1436, 1445
Bme18I GGWCC 2 cut(s) 121, 536
BmgBI CACGTC 1 cut(s) 725
BmgT120I GGNCC 4 cut(s) 121, 536, 659, 981
BmiI GGNNCC 2 cut(s) 28, 159
BmrFI CCNGG 7 cut(s) 559, 613, 794, 956, 1422, 1436, 1445
BmrI ACTGGG 1 cut(s) 600
BmuI ACTGGG 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 1139
BpmI CTGGAG 2 cut(s) 776, 1410
Bpu10I CCTNAGC 2 cut(s) 85, 1233
BpuEI CTTGAG 2 cut(s) 16, 1277
Bsa29I ATCGAT 1 cut(s) 1215
BsaHI GRCGYC 1 cut(s) 581
BsaI GGTCTC 2 cut(s) 621, 1425
BsaJI CCNNGG 6 cut(s) 611, 1027, 1075, 1421, 1435, 1548
BsaXI ACNNNNNCTCC 2 cut(s) 1524, 1554
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 333
Bse1I ACTGG 2 cut(s) 563, 595
Bse21I CCTNAGG 1 cut(s) 117
BseBI CCWGG 7 cut(s) 559, 613, 794, 956, 1422, 1436, 1445
BseCI ATCGAT 1 cut(s) 1215
BseDI CCNNGG 6 cut(s) 611, 1027, 1075, 1421, 1435, 1548
BseGI GGATG 3 cut(s) 187, 766, 984
BseLI CCNNNNNNNGG 2 cut(s) 90, 333
BseMII CTCAG 6 cut(s) 99, 131, 183, 1224, 1257, 1299
BseNI ACTGG 2 cut(s) 563, 595
BseRI GAGGAG 4 cut(s) 105, 158, 170, 441
BseXI GCAGC 2 cut(s) 1171, 1587
BsgI GTGCAG 1 cut(s) 1146
Bsh1236I CGCG 1 cut(s) 1152
BshFI GGCC 8 cut(s) 562, 601, 660, 959, 982, 1347, 1443, 1508
BshVI ATCGAT 1 cut(s) 1215
BsiSI CCGG 1 cut(s) 327
BsiWI CGTACG 1 cut(s) 816
BslFI GGGAC 1 cut(s) 1168
BslI CCNNNNNNNGG 2 cut(s) 90, 333
BsmAI GTCTC 4 cut(s) 621, 918, 1406, 1425
BsmFI GGGAC 1 cut(s) 1168
BsmI GAATGC 2 cut(s) 756, 1165
BsnI GGCC 8 cut(s) 562, 601, 660, 959, 982, 1347, 1443, 1508
Bso31I GGTCTC 2 cut(s) 621, 1425
Bsp143I GATC 8 cut(s) 184, 262, 865, 951, 1102, 1171, 1252, 1397
Bsp19I CCATGG 3 cut(s) 1027, 1075, 1548
BspACI CCGC 5 cut(s) 58, 524, 1111, 1152, 1348
BspANI GGCC 8 cut(s) 562, 601, 660, 959, 982, 1347, 1443, 1508
BspCNI CTCAG 6 cut(s) 98, 130, 184, 1225, 1258, 1300
BspDI ATCGAT 1 cut(s) 1215
BspFNI CGCG 1 cut(s) 1152
BspLI GGNNCC 2 cut(s) 28, 159
BspMAI CTGCAG 1 cut(s) 1506
BspPI GGATC 6 cut(s) 179, 873, 946, 1097, 1179, 1260
BspQI GCTCTTC 3 cut(s) 67, 85, 541
BspTI CTTAAG 1 cut(s) 1456
BspTNI GGTCTC 2 cut(s) 621, 1425
BsrBI CCGCTC 1 cut(s) 60
BsrI ACTGG 2 cut(s) 563, 595
BssECI CCNNGG 6 cut(s) 611, 1027, 1075, 1421, 1435, 1548
BssMI GATC 8 cut(s) 184, 262, 865, 951, 1102, 1171, 1252, 1397
BssNI GRCGYC 1 cut(s) 581
BssT1I CCWWGG 3 cut(s) 1027, 1075, 1548
Bst2UI CCWGG 7 cut(s) 559, 613, 794, 956, 1422, 1436, 1445
Bst4CI ACNGT 2 cut(s) 505, 1062
Bst6I CTCTTC 5 cut(s) 67, 85, 147, 541, 916
BstACI GRCGYC 1 cut(s) 581
BstAFI CTTAAG 1 cut(s) 1456
BstC8I GCNNGC 2 cut(s) 1506, 1586
BstDEI CTNAG 9 cut(s) 85, 117, 192, 272, 312, 1233, 1266, 1308, 1416
BstDSI CCRYGG 3 cut(s) 1027, 1075, 1548
BstF5I GGATG 3 cut(s) 187, 766, 984
BstFNI CGCG 1 cut(s) 1152
BstHHI GCGC 1 cut(s) 1590
BstKTI GATC 8 cut(s) 187, 265, 868, 954, 1105, 1174, 1255, 1400
BstMAI GTCTC 4 cut(s) 621, 918, 1406, 1425
BstMBI GATC 8 cut(s) 184, 262, 865, 951, 1102, 1171, 1252, 1397
BstMWI GCNNNNNNNGC 6 cut(s) 1149, 1193, 1229, 1304, 1514, 1581
BstNI CCWGG 7 cut(s) 559, 613, 794, 956, 1422, 1436, 1445
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 7 cut(s) 557, 611, 792, 954, 1420, 1434, 1443
BstSFI CTRYAG 2 cut(s) 1000, 1502
BstUI CGCG 1 cut(s) 1152
BstV1I GCAGC 2 cut(s) 1171, 1587
BstV2I GAAGAC 1 cut(s) 1139
BstX2I RGATCY 2 cut(s) 951, 1252
BstXI CCANNNNNNTGG 1 cut(s) 800
BstYI RGATCY 2 cut(s) 951, 1252
Bsu15I ATCGAT 1 cut(s) 1215
Bsu36I CCTNAGG 1 cut(s) 117
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 8 cut(s) 562, 601, 660, 959, 982, 1347, 1443, 1508
BsuTUI ATCGAT 1 cut(s) 1215
BtgI CCRYGG 3 cut(s) 1027, 1075, 1548
BtrI CACGTC 1 cut(s) 725
BtsCI GGATG 3 cut(s) 187, 766, 984
BtsI GCAGTG 1 cut(s) 1414
BtsIMutI CAGTG 1 cut(s) 1414
Cac8I GCNNGC 2 cut(s) 1506, 1586
CfoI GCGC 1 cut(s) 1590
Cfr13I GGNCC 4 cut(s) 121, 536, 659, 981
ClaI ATCGAT 1 cut(s) 1215
CsiI ACCWGGT 1 cut(s) 792
Csp6I GTAC 3 cut(s) 637, 817, 1058
CviAII CATG 6 cut(s) 170, 620, 1028, 1076, 1285, 1549
CviQI GTAC 3 cut(s) 637, 817, 1058
DdeI CTNAG 9 cut(s) 85, 117, 192, 272, 312, 1233, 1266, 1308, 1416
DpnI GATC 8 cut(s) 186, 264, 867, 953, 1104, 1173, 1254, 1399
DpnII GATC 8 cut(s) 184, 262, 865, 951, 1102, 1171, 1252, 1397
EaeI YGGCCR 3 cut(s) 560, 1345, 1441
Eam1104I CTCTTC 5 cut(s) 67, 85, 147, 541, 916
EarI CTCTTC 5 cut(s) 67, 85, 147, 541, 916
Eco130I CCWWGG 3 cut(s) 1027, 1075, 1548
Eco147I AGGCCT 1 cut(s) 959
Eco31I GGTCTC 2 cut(s) 621, 1425
Eco47I GGWCC 2 cut(s) 121, 536
Eco57I CTGAAG 2 cut(s) 315, 831
Eco81I CCTNAGG 1 cut(s) 117
EcoO109I RGGNCCY 2 cut(s) 121, 659
EcoRII CCWGG 7 cut(s) 557, 611, 792, 954, 1420, 1434, 1443
EcoT14I CCWWGG 3 cut(s) 1027, 1075, 1548
ErhI CCWWGG 3 cut(s) 1027, 1075, 1548
FaeI CATG 6 cut(s) 173, 623, 1031, 1079, 1288, 1552
FalI AAGNNNNNCTT 4 cut(s) 25, 57, 46, 78
FaqI GGGAC 1 cut(s) 1168
FatI CATG 6 cut(s) 169, 619, 1027, 1075, 1284, 1548
FauI CCCGC 1 cut(s) 1145
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 5 cut(s) 58, 1111, 1185, 1348, 1576
FokI GGATG 3 cut(s) 194, 773, 971
Fsp4HI GCNGC 5 cut(s) 58, 1111, 1185, 1348, 1576
FspBI CTAG 5 cut(s) 6, 576, 1302, 1395, 1572
GlaI GCGC 1 cut(s) 1589
GluI GCNGC 5 cut(s) 58, 1111, 1185, 1348, 1576
GsuI CTGGAG 2 cut(s) 776, 1410
HaeIII GGCC 8 cut(s) 562, 601, 660, 959, 982, 1347, 1443, 1508
HapII CCGG 1 cut(s) 327
HhaI GCGC 1 cut(s) 1590
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 6 cut(s) 173, 623, 1031, 1079, 1288, 1552
Hin6I GCGC 1 cut(s) 1588
HinP1I GCGC 1 cut(s) 1588
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 2 cut(s) 1296, 1515
HinfI GANTC 7 cut(s) 10, 398, 806, 1355, 1448, 1491, 1544
HpaII CCGG 1 cut(s) 327
HphI GGTGA 5 cut(s) 391, 471, 576, 635, 1300
Hpy166II GTNNAC 4 cut(s) 388, 397, 437, 934
Hpy188I TCNGA 5 cut(s) 193, 373, 811, 967, 1252
Hpy188III TCNNGA 4 cut(s) 529, 543, 1256, 1389
Hpy8I GTNNAC 4 cut(s) 388, 397, 437, 934
HpyAV CCTTC 5 cut(s) 549, 612, 620, 884, 1389
HpyCH4III ACNGT 2 cut(s) 505, 1062
HpyCH4IV ACGT 3 cut(s) 581, 724, 1539
HpyCH4V TGCA 9 cut(s) 728, 788, 840, 909, 1127, 1223, 1319, 1471, 1504
HpyF10VI GCNNNNNNNGC 6 cut(s) 1149, 1193, 1229, 1304, 1514, 1581
HpyF3I CTNAG 9 cut(s) 85, 117, 192, 272, 312, 1233, 1266, 1308, 1416
HpySE526I ACGT 3 cut(s) 581, 724, 1539
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 6 cut(s) 173, 623, 1031, 1079, 1288, 1552
HspAI GCGC 1 cut(s) 1588
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 8 cut(s) 184, 262, 865, 951, 1102, 1171, 1252, 1397
LguI GCTCTTC 3 cut(s) 67, 85, 541
LmnI GCTCC 3 cut(s) 157, 853, 1391
Lsp1109I GCAGC 2 cut(s) 1171, 1587
MabI ACCWGGT 1 cut(s) 792
MaeI CTAG 5 cut(s) 6, 576, 1302, 1395, 1572
MaeII ACGT 3 cut(s) 581, 724, 1539
MaeIII GTNAC 8 cut(s) 93, 209, 307, 505, 582, 594, 1067, 1556
MalI GATC 8 cut(s) 186, 264, 867, 953, 1104, 1173, 1254, 1399
MbiI CCGCTC 1 cut(s) 60
MboI GATC 8 cut(s) 184, 262, 865, 951, 1102, 1171, 1252, 1397
MfeI CAATTG 1 cut(s) 766
MflI RGATCY 2 cut(s) 951, 1252
MlsI TGGCCA 2 cut(s) 562, 1443
MluCI AATT 8 cut(s) 196, 471, 490, 704, 711, 766, 878, 1473
MluNI TGGCCA 2 cut(s) 562, 1443
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 2 cut(s) 72, 1545
Mox20I TGGCCA 2 cut(s) 562, 1443
MscI TGGCCA 2 cut(s) 562, 1443
MseI TTAA 4 cut(s) 108, 1064, 1191, 1457
MslI CAYNNNNRTG 1 cut(s) 1289
Msp20I TGGCCA 2 cut(s) 562, 1443
MspCI CTTAAG 1 cut(s) 1456
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 7 cut(s) 559, 613, 794, 956, 1422, 1436, 1445
MunI CAATTG 1 cut(s) 766
Mva1269I GAATGC 2 cut(s) 756, 1165
MvaI CCWGG 7 cut(s) 559, 613, 794, 956, 1422, 1436, 1445
MvnI CGCG 1 cut(s) 1152
MwoI GCNNNNNNNGC 6 cut(s) 1149, 1193, 1229, 1304, 1514, 1581
NcoI CCATGG 3 cut(s) 1027, 1075, 1548
NdeII GATC 8 cut(s) 184, 262, 865, 951, 1102, 1171, 1252, 1397
NlaIII CATG 6 cut(s) 173, 623, 1031, 1079, 1288, 1552
NlaIV GGNNCC 2 cut(s) 28, 159
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 5 cut(s) 93, 209, 505, 582, 594
NspI RCATGY 1 cut(s) 173
PceI AGGCCT 1 cut(s) 959
PciI ACATGT 1 cut(s) 169
PciSI GCTCTTC 3 cut(s) 67, 85, 541
PctI GAATGC 2 cut(s) 756, 1165
PfeI GAWTC 6 cut(s) 10, 806, 1355, 1448, 1491, 1544
Pfl23II CGTACG 1 cut(s) 816
PflFI GACNNNGTC 1 cut(s) 929
PkrI GCNGC 5 cut(s) 59, 1112, 1186, 1349, 1577
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PpuMI RGGWCCY 1 cut(s) 121
PscI ACATGT 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 108
PsiI TTATAA 1 cut(s) 1038
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 7 cut(s) 557, 611, 792, 954, 1420, 1434, 1443
PspGI CCWGG 7 cut(s) 557, 611, 792, 954, 1420, 1434, 1443
PspLI CGTACG 1 cut(s) 816
PspN4I GGNNCC 2 cut(s) 28, 159
PspPI GGNCC 4 cut(s) 121, 536, 659, 981
PspPPI RGGWCCY 1 cut(s) 121
PstI CTGCAG 1 cut(s) 1506
PsuI RGATCY 2 cut(s) 951, 1252
PsyI GACNNNGTC 1 cut(s) 929
RsaI GTAC 3 cut(s) 638, 818, 1059
RsaNI GTAC 3 cut(s) 637, 817, 1058
RseI CAYNNNNRTG 1 cut(s) 1289
SapI GCTCTTC 3 cut(s) 67, 85, 541
SaqAI TTAA 4 cut(s) 108, 1064, 1191, 1457
SatI GCNGC 5 cut(s) 58, 1111, 1185, 1348, 1576
Sau3AI GATC 8 cut(s) 184, 262, 865, 951, 1102, 1171, 1252, 1397
Sau96I GGNCC 4 cut(s) 121, 536, 659, 981
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 7 cut(s) 559, 613, 794, 956, 1422, 1436, 1445
SexAI ACCWGGT 1 cut(s) 792
SfcI CTRYAG 2 cut(s) 1000, 1502
SinI GGWCC 2 cut(s) 121, 536
SmiMI CAYNNNNRTG 1 cut(s) 1289
SmlI CTYRAG 3 cut(s) 31, 1256, 1456
SmoI CTYRAG 3 cut(s) 31, 1256, 1456
Sse9I AATT 8 cut(s) 196, 471, 490, 704, 711, 766, 878, 1473
SseBI AGGCCT 1 cut(s) 959
SsiI CCGC 5 cut(s) 58, 524, 1111, 1152, 1348
SspMI CTAG 5 cut(s) 6, 576, 1302, 1395, 1572
StuI AGGCCT 1 cut(s) 959
StyD4I CCNGG 7 cut(s) 557, 611, 792, 954, 1420, 1434, 1443
StyI CCWWGG 3 cut(s) 1027, 1075, 1548
TaaI ACNGT 2 cut(s) 505, 1062
TaiI ACGT 3 cut(s) 584, 727, 1542
TaqI TCGA 3 cut(s) 1215, 1484, 1512
TasI AATT 8 cut(s) 196, 471, 490, 704, 711, 766, 878, 1473
TauI GCSGC 3 cut(s) 60, 1113, 1350
TfiI GAWTC 6 cut(s) 10, 806, 1355, 1448, 1491, 1544
Tru1I TTAA 4 cut(s) 108, 1064, 1191, 1457
Tru9I TTAA 4 cut(s) 108, 1064, 1191, 1457
TscAI CASTG 1 cut(s) 1414
TseFI GTSAC 5 cut(s) 93, 209, 505, 582, 594
TseI GCWGC 2 cut(s) 1184, 1575
Tsp45I GTSAC 5 cut(s) 93, 209, 505, 582, 594
TspDTI ATGAA 3 cut(s) 300, 359, 1371
TspGWI ACGGA 1 cut(s) 951
TspRI CASTG 1 cut(s) 1414
Tth111I GACNNNGTC 1 cut(s) 929
Vha464I CTTAAG 1 cut(s) 1456
VpaK11BI GGWCC 2 cut(s) 121, 536
VspI ATTAAT 1 cut(s) 108
XapI RAATTY 2 cut(s) 471, 490
XceI RCATGY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 5 cut(s) 6, 576, 1302, 1395, 1572
ZraI GACGTC 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.