Rh5AG200400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000079
Physical Location & Seq
Forward (+)
23578789 .. 23584597
5809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG200400.1

Sequence Viewer

Length: 2823 bp
ATGACAAAGGCTCTCAACCCAACTCAGCATCCAGTCAGTAGCAGGGAGATCTTCTGCTCGGGCCATTTAAAAGCTCTTATCAGGTTGCAAATGGCTTCCAAGTCAAAGCCTCAAGAAGAAGCTGATGAAGACAGGATCAGCAAACTGCCAGATGATGTTCTTTGTCATATTCTTTCATTACTCGATACACATGAAGCAGTGCGTACAACTATCCTGTCAAAAAAATGGAACAACTTCTGGACTTCACTTCCGAATCTTGAATTCTATGACAAATATTTCCCTACATCATATTCGTGGCTCGAATATGAATGTGATCCTTTTATGATGTTTGTTGATCGTGTAATGCTTCTTCATGACTCAAAAGACATCCGAAAATTCTCTCTTTCTCGTATGTATAGAGAAGTTGAATTTGTGGTTCAGGATGTATATCTTATTCATCGCTGGATTGAAGCTGCCATTGAGCATAACATTGTTGAACTTGATCTTTCTCTTGTGGACTGCAAGGGAATGAATTTTTATTTGCCTCAGAGCCTTTACACGTGCCCAACGCTAGTTGTTTTGAAGGTAGAATCAAATTGTATTTCCTATGATCCTCCCATCACAGGGTGTTTTCCAAGGCTTAAGGTGCTTGTTATTTCATTTACAAATCCTGATAGCCCTGATCCGGTTAGGAGACTCTTTTCTTGTTGCCCTGTACTCGAAGATCTAACTATATATGGATATCCTGGAAGAGATGATTTGGATATTACTATCTCTGCACCTGAATTGAAGACATTAAAGATACATCTGAGCTGCAATGAATATTATATGTATGACCCTGCATACACTTTTAATATTGATGCCCCAAAGCTAGAAAACTTCAGTCTCAAGGATCCTTGGTTTCTTTCAGACTATCATTTGGAGAATGGAAATTCTGTAGTTAAAGCTAAAATTGTACTCAACGACTCAGAGGATTATGATCCTATCGACTTTGCTGATCGTACAACTGCCTTACTAGGAAGAATTTCAAATGTTGAATACTTGTCTTTTTCAGCTGCATTTCTGGAGGATTTTCATCTTTCCACTTTTGATACTCTGTACCAATTGGAGCTGAGTCTTGGTGGTTGCAATAACTGGGAACTGCTGATAGAGTTTCTCAAGAAATCTCCAAATCTGAAACATCTCGTCTTAAAAAATAAGGGCCGTTTACCATATTTTGAATTAGATGAGCTTGAAAGTAATCTGGTTAGTCCACCAGTGTCACCAAATTGTTTGCTTTCATCCCTAGAGACTATCTCTATTAAGCAATTCACGGGACAGCAGGATGAGATGGAAGTGGCAGAATATTTGTTAAAGAACGGTGAGGTGTTGAAAACAATGAAGATCTATATTATGAATCCTAGATCTACAGTCACAGCTTTCATTATTCATTCACATATTCTTCCCGGGCTAAAGTATCAGGATTTGATGTCAGAGGTTCAAGCAAAAAGAGTTAATAAAGATAGGATCAGTGCACTACCAGATGAAGTCCTTTATCACATCCTTTCGTTCCTTAAAACCGAAGATGTTGTGATGACCATCTTTTTGTCTAGAAGATGGAAGAACATTTGGGCCTCTGTTCCGAGTCTAGATTTCTGTGACCAAGAAAACCCTGACACTATTCCTTTTTCGAGGTTTATTGATAATGTACTCTTCTTCCGTGACTCAACAGACATTCATAAGTTTCATCTCCATTCCATTAGTGTTGAGGATTTTGATCGTATTTGTGGTTGGATTGGCGCTGCCATTAGGCGCAATGTTGTTGAACTTGATCTTTCTGTTAAGTATTATGGAGGTGATGAGGATCACCAGCAGATCTTTAAGTTGCCTAAGAGTGTTTTCACATGTAAAACTTTGAGGGTTTTGAACTTGTGGTCAAATTTTATTATCAATGCTCCTGAATCAGGGTGTTTCCCGAATCTCAAGTCTCTCTATGTTCATTTTGATCATCCTGTCAATAACTCAATGGAGAAACTTTTTGCTTGCTGCCCTGTGCTGGAAGATTTGAGCATACATGGAAATCATGGATTTTATGGAGATGAGGTCGTTTTGAATTTCACCATATCTGCACCCGAACTGAAAACACTGAAAGTACAATGGACGACGCATGGTGATTATGAGAGGTGCAACTTTTATGTTGTTGCCCCAAAGCTTGAAAATTTTCATCTCTGGCAGTATCCTTCAACAGACTGTTTTTTGGAGAATGCAAAATCTCTAGTCAGAGTTACTATTTCTCTACAAGACCACTTTGCAGATGAAGACCATCTCTTCGCTATCCGTGGAACTGCACTTCTGGCAGTAATTTCCAATGTTAGATATTTGTCTCTTTCAGCACATTGTTTGAAAGGTTGCTGTCTTCCTGTCTTTGATAAGTTGAGCCGATTGGAGCTTGCTCTCTACAATTGCTATTACTGGGAACTGCTAAAAGAGCTTCTCAGGAGATCACCTAAACTGGAATATCTTGTCTTAGAGCTGAAAGACTTCATATGCTCCACGGCACCTTCGAGTCATCAATGGAGTCCACCAGAGTCGATACCTATCTGTTTGTTGATGCATCTCAAGACTGTCTCTATAAGGGGATTCAAGGGAAAACTGGATGAGATGGATGTGGCAAAGTATTTGTTAAACAACGGTGGAGTTTTGAAGAGGATGACTTTTTATAGTGAGGATCTTTTGCGTACCAAAGAGGAGTTAAAAATGGAGTTGTCAATGTGTCAATGGGGTTCAAAGACTTGCCAAGTTGAATTTTGCCCGGACCAAAAAGACGAAGGCTTGTCATTTTTAGGTATGCGTTCTTGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

940

Amino Acids

108.6

Weight (kDa)

5.5

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 46 - 86 8.9e-09 F-box domain
LRR_At1g61320_AtMIF1 PF23622 116 - 456 1.7e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 146 - 299 4.4e-11 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 415 - 455 2.9e-14 FBD
F-box PF00646 496 - 535 1.3e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 565 - 894 6.9e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 583 - 733 3.7e-13 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 848 - 892 3.2e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 2515
AcuI CTGAAG 1 cut(s) 844
AcvI CACGTG 1 cut(s) 540
AdeI CACNNNGTG 1 cut(s) 606
AfaI GTAC 8 cut(s) 205, 696, 936, 982, 1079, 1668, 2112, 2698
AfiI CCNNNNNNNGG 5 cut(s) 602, 603, 664, 1922, 2014
AflII CTTAAG 1 cut(s) 620
AflIII ACRYGT 2 cut(s) 537, 1862
AjnI CCWGG 1 cut(s) 724
Alw21I GWGCWC 1 cut(s) 1495
Alw26I GTCTC 6 cut(s) 667, 869, 1262, 1950, 2346, 2590
Alw44I GTGCAC 1 cut(s) 1491
Ama87I CYCGRG 2 cut(s) 58, 1424
AoxI GGCC 3 cut(s) 61, 1180, 1590
ApaLI GTGCAC 1 cut(s) 1491
ApeKI GCWGC 5 cut(s) 452, 792, 1034, 1760, 2004
ArsI GACNNNNNNTTYG 6 cut(s) 1546, 1578, 1928, 1960, 2270, 2302
Asp700I GAANNNNTTC 4 cut(s) 233, 1003, 2178, 2498
AspLEI GCGC 2 cut(s) 1760, 1773
AspS9I GGNCC 4 cut(s) 61, 1180, 1590, 2773
AsuC2I CCSGG 3 cut(s) 1425, 1426, 2771
AsuHPI GGTGA 7 cut(s) 1233, 1352, 1817, 1826, 2068, 2141, 2454
AvaI CYCGRG 2 cut(s) 58, 1424
AvaII GGWCC 1 cut(s) 2773
BaeGI GKGCMC 2 cut(s) 545, 1495
BamHI GGATCC 1 cut(s) 871
BanI GGYRCC 1 cut(s) 2515
BarI GAAGNNNNNNTAC 2 cut(s) 333, 365
BbrPI CACGTG 1 cut(s) 540
BbsI GAAGAC 4 cut(s) 135, 776, 2283, 2366
Bbv12I GWGCWC 1 cut(s) 1495
BbvI GCAGC 5 cut(s) 439, 779, 1021, 1747, 1991
BccI CCATC 6 cut(s) 605, 1303, 1565, 1569, 2289, 2614
BceAI ACGGC 2 cut(s) 1167, 2529
BciT130I CCWGG 1 cut(s) 726
BciVI GTATCC 1 cut(s) 2205
BclI TGATCA 1 cut(s) 1963
BcnI CCSGG 3 cut(s) 1425, 1426, 2771
BcoDI GTCTC 6 cut(s) 667, 869, 1262, 1950, 2346, 2590
BfaI CTAG 8 cut(s) 551, 851, 995, 1265, 1380, 1569, 1607, 2234
BfmI CTRYAG 2 cut(s) 915, 1386
BfoI RGCGCY 1 cut(s) 1761
BfrI CTTAAG 1 cut(s) 620
BfuI GTATCC 1 cut(s) 2205
BglII AGATCT 5 cut(s) 48, 703, 1362, 1382, 1833
BisI GCNGC 5 cut(s) 453, 793, 1035, 1761, 2005
BlsI GCNGC 5 cut(s) 454, 794, 1036, 1762, 2006
Bme1390I CCNGG 4 cut(s) 726, 1425, 1426, 2771
Bme18I GGWCC 1 cut(s) 2773
BmeT110I CYCGRG 2 cut(s) 58, 1424
BmgT120I GGNCC 4 cut(s) 61, 1180, 1590, 2773
BmiI GGNNCC 2 cut(s) 873, 2517
BmrFI CCNGG 4 cut(s) 726, 1425, 1426, 2771
BmrI ACTGGG 2 cut(s) 1123, 2440
BmsI GCATC 4 cut(s) 37, 829, 2559, 2581
BmuI ACTGGG 2 cut(s) 1123, 2440
BpiI GAAGAC 4 cut(s) 135, 776, 2283, 2366
BplI GAGNNNNNCTC 2 cut(s) 1259, 1291
BpmI CTGGAG 1 cut(s) 1064
BpuEI CTTGAG 5 cut(s) 96, 851, 1121, 1925, 2561
BpuMI CCSGG 3 cut(s) 1425, 1426, 2771
BsaAI YACGTR 1 cut(s) 540
BsaBI GATNNNNATC 7 cut(s) 426, 957, 1053, 1556, 1734, 1821, 2555
BsaJI CCNNGG 5 cut(s) 614, 875, 1424, 2296, 2511
BsaWI WCCGGW 1 cut(s) 664
BsaXI ACNNNNNCTCC 2 cut(s) 2046, 2076
Bsc4I CCNNNNNNNGG 5 cut(s) 602, 603, 664, 1922, 2014
Bse1I ACTGG 6 cut(s) 32, 1118, 1235, 2435, 2475, 2616
Bse3DI GCAATG 2 cut(s) 802, 1780
Bse8I GATNNNNATC 7 cut(s) 426, 957, 1053, 1556, 1734, 1821, 2555
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 5 cut(s) 614, 875, 1424, 2296, 2511
BseJI GATNNNNATC 7 cut(s) 426, 957, 1053, 1556, 1734, 1821, 2555
BseLI CCNNNNNNNGG 5 cut(s) 602, 603, 664, 1922, 2014
BseMI GCAATG 2 cut(s) 802, 1780
BseMII CTCAG 6 cut(s) 38, 539, 779, 960, 1082, 2467
BseNI ACTGG 6 cut(s) 32, 1118, 1235, 2435, 2475, 2616
BseRI GAGGAG 1 cut(s) 2720
BseSI GKGCMC 2 cut(s) 545, 1495
BseXI GCAGC 5 cut(s) 439, 779, 1021, 1747, 1991
BsgI GTGCAG 3 cut(s) 741, 2070, 2289
BshFI GGCC 3 cut(s) 63, 1182, 1592
BshNI GGYRCC 1 cut(s) 2515
BsiHKAI GWGCWC 1 cut(s) 1495
BsiHKCI CYCGRG 2 cut(s) 58, 1424
BsiSI CCGG 3 cut(s) 665, 1425, 2771
BslFI GGGAC 1 cut(s) 1308
BslI CCNNNNNNNGG 5 cut(s) 602, 603, 664, 1922, 2014
BsmAI GTCTC 6 cut(s) 667, 869, 1262, 1950, 2346, 2590
BsmFI GGGAC 1 cut(s) 1308
BsmI GAATGC 1 cut(s) 2227
BsnI GGCC 3 cut(s) 63, 1182, 1592
BsoBI CYCGRG 2 cut(s) 58, 1424
Bsp1286I GDGCHC 2 cut(s) 545, 1495
BspANI GGCC 3 cut(s) 63, 1182, 1592
BspCNI CTCAG 6 cut(s) 37, 538, 780, 959, 1083, 2466
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 873, 2517
BspT107I GGYRCC 1 cut(s) 2515
BspTI CTTAAG 1 cut(s) 620
BsrDI GCAATG 2 cut(s) 802, 1780
BsrI ACTGG 6 cut(s) 32, 1118, 1235, 2435, 2475, 2616
BssECI CCNNGG 5 cut(s) 614, 875, 1424, 2296, 2511
BssT1I CCWWGG 2 cut(s) 614, 875
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 5 cut(s) 1340, 1390, 2210, 2584, 2651
Bst6I CTCTTC 4 cut(s) 724, 1676, 2291, 2657
BstAFI CTTAAG 1 cut(s) 620
BstBAI YACGTR 1 cut(s) 540
BstC8I GCNNGC 2 cut(s) 2002, 2409
BstDEI CTNAG 8 cut(s) 24, 525, 788, 946, 1091, 1848, 2453, 2485
BstDSI CCRYGG 2 cut(s) 2296, 2511
BstENI CCTNNNNNAGG 1 cut(s) 1920
BstH2I RGCGCY 1 cut(s) 1761
BstHHI GCGC 2 cut(s) 1760, 1773
BstMAI GTCTC 6 cut(s) 667, 869, 1262, 1950, 2346, 2590
BstMWI GCNNNNNNNGC 3 cut(s) 625, 2312, 2446
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 1 cut(s) 1866
BstSCI CCNGG 4 cut(s) 724, 1423, 1424, 2769
BstSFI CTRYAG 2 cut(s) 915, 1386
BstSLI GKGCMC 2 cut(s) 545, 1495
BstV1I GCAGC 5 cut(s) 439, 779, 1021, 1747, 1991
BstV2I GAAGAC 4 cut(s) 135, 776, 2283, 2366
BstX2I RGATCY 7 cut(s) 48, 703, 871, 1362, 1382, 1833, 2686
BstYI RGATCY 7 cut(s) 48, 703, 871, 1362, 1382, 1833, 2686
BsuI GTATCC 1 cut(s) 2205
BsuRI GGCC 3 cut(s) 63, 1182, 1592
BtgI CCRYGG 2 cut(s) 2296, 2511
BtgZI GCGATG 1 cut(s) 422
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 4 cut(s) 204, 1242, 1495, 2102
Cac8I GCNNGC 2 cut(s) 2002, 2409
CciI TCATGA 1 cut(s) 352
CfoI GCGC 2 cut(s) 1760, 1773
Cfr13I GGNCC 4 cut(s) 61, 1180, 1590, 2773
Cfr9I CCCGGG 1 cut(s) 1424
CseI GACGC 1 cut(s) 2131
Csp6I GTAC 8 cut(s) 204, 695, 935, 981, 1078, 1667, 2111, 2697
CviAII CATG 6 cut(s) 191, 353, 1863, 2033, 2042, 2126
CviQI GTAC 8 cut(s) 204, 695, 935, 981, 1078, 1667, 2111, 2697
DdeI CTNAG 8 cut(s) 24, 525, 788, 946, 1091, 1848, 2453, 2485
DraI TTTAAA 1 cut(s) 69
DraIII CACNNNGTG 1 cut(s) 606
Eam1104I CTCTTC 4 cut(s) 724, 1676, 2291, 2657
EarI CTCTTC 4 cut(s) 724, 1676, 2291, 2657
Eco130I CCWWGG 2 cut(s) 614, 875
Eco32I GATATC 1 cut(s) 722
Eco47I GGWCC 1 cut(s) 2773
Eco57I CTGAAG 1 cut(s) 844
Eco72I CACGTG 1 cut(s) 540
Eco88I CYCGRG 2 cut(s) 58, 1424
EcoNI CCTNNNNNAGG 1 cut(s) 1920
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 724
EcoRV GATATC 1 cut(s) 722
EcoT14I CCWWGG 2 cut(s) 614, 875
EcoT22I ATGCAT 1 cut(s) 2574
ErhI CCWWGG 2 cut(s) 614, 875
FaeI CATG 6 cut(s) 194, 356, 1866, 2036, 2045, 2129
FaqI GGGAC 1 cut(s) 1308
FatI CATG 6 cut(s) 190, 352, 1862, 2032, 2041, 2125
FauNDI CATATG 1 cut(s) 2504
FbaI TGATCA 1 cut(s) 1963
Fnu4HI GCNGC 5 cut(s) 453, 793, 1035, 1761, 2005
Fsp4HI GCNGC 5 cut(s) 453, 793, 1035, 1761, 2005
FspBI CTAG 8 cut(s) 551, 851, 995, 1265, 1380, 1569, 1607, 2234
GlaI GCGC 2 cut(s) 1759, 1772
GluI GCNGC 5 cut(s) 453, 793, 1035, 1761, 2005
GsuI CTGGAG 1 cut(s) 1064
HaeII RGCGCY 1 cut(s) 1761
HaeIII GGCC 3 cut(s) 63, 1182, 1592
HapII CCGG 3 cut(s) 665, 1425, 2771
HgaI GACGC 1 cut(s) 2131
HhaI GCGC 2 cut(s) 1760, 1773
Hin1II CATG 6 cut(s) 194, 356, 1866, 2036, 2045, 2129
Hin6I GCGC 2 cut(s) 1758, 1771
HinP1I GCGC 2 cut(s) 1758, 1771
HindIII AAGCTT 1 cut(s) 2168
HpaII CCGG 3 cut(s) 665, 1425, 2771
HphI GGTGA 7 cut(s) 1233, 1352, 1817, 1826, 2068, 2141, 2454
Hpy166II GTNNAC 5 cut(s) 496, 1187, 1232, 1493, 2540
Hpy8I GTNNAC 5 cut(s) 496, 1187, 1232, 1493, 2540
Hpy99I CGWCG 1 cut(s) 2125
HpyAV CCTTC 4 cut(s) 556, 2208, 2529, 2780
HpyCH4III ACNGT 5 cut(s) 1340, 1390, 2210, 2584, 2651
HpyCH4IV ACGT 1 cut(s) 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 625, 2312, 2446
HpyF3I CTNAG 8 cut(s) 24, 525, 788, 946, 1091, 1848, 2453, 2485
HpySE526I ACGT 1 cut(s) 539
Hsp92II CATG 6 cut(s) 194, 356, 1866, 2036, 2045, 2129
HspAI GCGC 2 cut(s) 1758, 1771
Ksp22I TGATCA 1 cut(s) 1963
LmnI GCTCC 4 cut(s) 1087, 1918, 2404, 2513
Lsp1109I GCAGC 5 cut(s) 439, 779, 1021, 1747, 1991
LweI GCATC 4 cut(s) 37, 829, 2559, 2581
MaeI CTAG 8 cut(s) 551, 851, 995, 1265, 1380, 1569, 1607, 2234
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 5 cut(s) 1239, 1390, 1616, 1679, 2242
MfeI CAATTG 2 cut(s) 1082, 2419
MflI RGATCY 7 cut(s) 48, 703, 871, 1362, 1382, 1833, 2686
MhlI GDGCHC 2 cut(s) 545, 1495
MlyI GAGTC 9 cut(s) 350, 669, 938, 1102, 1612, 1676, 2533, 2545, 2555
MmeI TCCRAC 1 cut(s) 1730
Mph1103I ATGCAT 1 cut(s) 2574
MroXI GAANNNNTTC 4 cut(s) 233, 1003, 2178, 2498
MslI CAYNNNNRTG 1 cut(s) 292
MspA1I CMGCKG 1 cut(s) 1034
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 3 cut(s) 665, 1425, 2771
MspR9I CCNGG 4 cut(s) 726, 1425, 1426, 2771
MunI CAATTG 2 cut(s) 1082, 2419
Mva1269I GAATGC 1 cut(s) 2227
MvaI CCWGG 1 cut(s) 726
MwoI GCNNNNNNNGC 3 cut(s) 625, 2312, 2446
NciI CCSGG 3 cut(s) 1425, 1426, 2771
NdeI CATATG 1 cut(s) 2504
NlaIII CATG 6 cut(s) 194, 356, 1866, 2036, 2045, 2129
NlaIV GGNNCC 2 cut(s) 873, 2517
NmuCI GTSAC 4 cut(s) 1239, 1390, 1616, 1679
NsiI ATGCAT 1 cut(s) 2574
NspI RCATGY 1 cut(s) 1866
PagI TCATGA 1 cut(s) 352
PciI ACATGT 1 cut(s) 1862
PcsI WCGNNNNNNNCGW 1 cut(s) 2519
PctI GAATGC 1 cut(s) 2227
PdmI GAANNNNTTC 4 cut(s) 233, 1003, 2178, 2498
PfeI GAWTC 6 cut(s) 253, 569, 1375, 1919, 1936, 2598
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 5 cut(s) 454, 794, 1036, 1762, 2006
PleI GAGTC 9 cut(s) 350, 669, 938, 1101, 1611, 1676, 2532, 2544, 2554
PmaCI CACGTG 1 cut(s) 540
PmlI CACGTG 1 cut(s) 540
PpsI GAGTC 9 cut(s) 350, 669, 938, 1101, 1611, 1676, 2532, 2544, 2554
Ppu21I YACGTR 1 cut(s) 540
PscI ACATGT 1 cut(s) 1862
Psp6I CCWGG 1 cut(s) 724
PspCI CACGTG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 2 cut(s) 873, 2517
PspPI GGNCC 4 cut(s) 61, 1180, 1590, 2773
PsuI RGATCY 7 cut(s) 48, 703, 871, 1362, 1382, 1833, 2686
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 8 cut(s) 205, 696, 936, 982, 1079, 1668, 2112, 2698
RsaNI GTAC 8 cut(s) 204, 695, 935, 981, 1078, 1667, 2111, 2697
RseI CAYNNNNRTG 1 cut(s) 292
SatI GCNGC 5 cut(s) 453, 793, 1035, 1761, 2005
Sau96I GGNCC 4 cut(s) 61, 1180, 1590, 2773
SchI GAGTC 9 cut(s) 350, 669, 938, 1102, 1612, 1676, 2533, 2545, 2555
ScrFI CCNGG 4 cut(s) 726, 1425, 1426, 2771
SduI GDGCHC 2 cut(s) 545, 1495
SfaNI GCATC 4 cut(s) 37, 829, 2559, 2581
SfcI CTRYAG 2 cut(s) 915, 1386
SinI GGWCC 1 cut(s) 2773
SmaI CCCGGG 1 cut(s) 1426
SmiMI CAYNNNNRTG 1 cut(s) 292
SmlI CTYRAG 6 cut(s) 111, 620, 866, 1136, 1940, 2576
SmoI CTYRAG 6 cut(s) 111, 620, 866, 1136, 1940, 2576
SspI AATATT 4 cut(s) 275, 803, 835, 1325
SspMI CTAG 8 cut(s) 551, 851, 995, 1265, 1380, 1569, 1607, 2234
StyD4I CCNGG 4 cut(s) 724, 1423, 1424, 2769
StyI CCWWGG 2 cut(s) 614, 875
TaaI ACNGT 5 cut(s) 1340, 1390, 2210, 2584, 2651
TaiI ACGT 1 cut(s) 542
TaqI TCGA 7 cut(s) 183, 300, 699, 966, 1649, 2522, 2549
TatI WGTACW 4 cut(s) 694, 934, 1666, 2110
TfiI GAWTC 6 cut(s) 253, 569, 1375, 1919, 1936, 2598
TscAI CASTG 4 cut(s) 204, 1242, 1495, 2109
TseFI GTSAC 4 cut(s) 1239, 1390, 1616, 1679
TseI GCWGC 5 cut(s) 452, 792, 1034, 1760, 2004
Tsp45I GTSAC 4 cut(s) 1239, 1390, 1616, 1679
TspGWI ACGGA 2 cut(s) 1667, 2285
TspMI CCCGGG 1 cut(s) 1424
TspRI CASTG 4 cut(s) 204, 1242, 1495, 2109
Vha464I CTTAAG 1 cut(s) 620
VneI GTGCAC 1 cut(s) 1491
VpaK11BI GGWCC 1 cut(s) 2773
XagI CCTNNNNNAGG 1 cut(s) 1920
XbaI TCTAGA 2 cut(s) 1568, 1606
XceI RCATGY 1 cut(s) 1866
XmaI CCCGGG 1 cut(s) 1424
XmnI GAANNNNTTC 4 cut(s) 233, 1003, 2178, 2498
XspI CTAG 8 cut(s) 551, 851, 995, 1265, 1380, 1569, 1607, 2234
Zsp2I ATGCAT 1 cut(s) 2574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.