MD05G1193700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000079
Physical Location & Seq
Reverse (-)
32161826 .. 32162617
792 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1193700.v1.1.491

Sequence Viewer

Length: 792 bp
ATGATGTACGGACCACGAGTTTGTCTACAAGATGGAACAAGGTGTACCAGTGCTCCCATTAGCCTACAGTTTGATAGCAGAGATTTTTCTTATGCACCTCAACAACAAAGGAGGTTTATGAGGTTTGTTGACGGCGTAATGAAATTATGCGGCTCATCGTGCAACATTAGAAAACTATGTCTTCGTTGTAAGTCTTTCGCTTTTAAAGATGAAGATTTCTCTTGTATTCGTAGATGGATATCCACTGCCATCAAGAACAATGTTATTGAACTTGATCTTTATTTGTTTAGTATTTATTATGATTTCCTCGAGATTTTTGAAATGCCTCCGAGCTTTTACGGGTGCAGATCATTTGTGAGTCTGAAGTTGGAAACAAATTATATTACCTTTACATCAGGTTGTTTCCCAAGTCTCAAGTACCTCCATGTTACATCTCATAACAGTATTATCGGTGGAAGGGTAAAGATCTTTCTGAACTGCCCTGCGCTTGAAGATTTGACTATGATTGGAAACATGGGAAGAGATGTTTTGGTAGTTAACATCTCTGCACCTCAGTTAACAACTGATACTCTCGAGTGCGAGTTTTTCGTTGATGCCCAGAGACTTGAAAACCTCCATGTCAATATGAATTGGGCTTGTTTGTCGTCGAATTATGTTTTGGAGAATTCTAAATCCTTGGTCAAGGCCAAAATTCATCTCAAATATTATATGCCTCCAAAATATATGTATAAATATCCATCCTATGTTGACAATATATCTACGTTACTTGCAGGTACGTACTTCAAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

264

Amino Acids

30.41

Weight (kDa)

8.62

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 77 - 215 1.4e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 761
AccI GTMKAC 1 cut(s) 25
AciI CCGC 1 cut(s) 150
AcsI RAATTY 2 cut(s) 664, 690
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 5 cut(s) 8, 46, 419, 775, 779
AgsI TTSAA 5 cut(s) 269, 320, 491, 608, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 641, 673
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 2 cut(s) 416, 595
Ama87I CYCGRG 2 cut(s) 308, 572
AoxI GGCC 1 cut(s) 684
ApoI RAATTY 2 cut(s) 664, 690
ArsI GACNNNNNNTTYG 1 cut(s) 35
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 1 cut(s) 11
AvaI CYCGRG 2 cut(s) 308, 572
AvaII GGWCC 1 cut(s) 11
BauI CACGAG 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 55
BccI CCATC 4 cut(s) 26, 228, 257, 745
BceAI ACGGC 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 416, 595
BfmI CTRYAG 1 cut(s) 65
BfuAI ACCTGC 1 cut(s) 761
BglII AGATCT 1 cut(s) 465
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 11
BmeT110I CYCGRG 2 cut(s) 308, 572
BmgT120I GGNCC 1 cut(s) 11
BmsI GCATC 1 cut(s) 583
BpiI GAAGAC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 398
BsaAI YACGTR 1 cut(s) 777
BsaBI GATNNNNATC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 675
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bse1I ACTGG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 675
BseGI GGATG 1 cut(s) 737
BseJI GATNNNNATC 1 cut(s) 238
BseMII CTCAG 1 cut(s) 566
BseNI ACTGG 1 cut(s) 48
BsgI GTGCAG 2 cut(s) 364, 531
BshFI GGCC 1 cut(s) 686
BsiHKAI GWGCWC 1 cut(s) 55
BsiHKCI CYCGRG 2 cut(s) 308, 572
BsmAI GTCTC 2 cut(s) 416, 595
BsnI GGCC 1 cut(s) 686
BsoBI CYCGRG 2 cut(s) 308, 572
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 3 cut(s) 274, 347, 465
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 686
BspCNI CTCAG 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 761
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 675
BssMI GATC 3 cut(s) 274, 347, 465
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 675
Bst2BI CACGAG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 69, 443
Bst6I CTCTTC 1 cut(s) 514
BstBAI YACGTR 1 cut(s) 777
BstDEI CTNAG 1 cut(s) 552
BstF5I GGATG 1 cut(s) 737
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 3 cut(s) 277, 350, 468
BstMAI GTCTC 2 cut(s) 416, 595
BstMBI GATC 3 cut(s) 274, 347, 465
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 65
BstSNI TACGTA 1 cut(s) 777
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 465
BstYI RGATCY 1 cut(s) 465
BsuRI GGCC 1 cut(s) 686
BtsCI GGATG 1 cut(s) 737
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 55, 243
BveI ACCTGC 1 cut(s) 761
CfoI GCGC 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 5 cut(s) 7, 45, 418, 774, 778
CviAII CATG 3 cut(s) 425, 514, 617
CviJI RGCY 5 cut(s) 63, 153, 333, 635, 686
CviKI_1 RGCY 5 cut(s) 63, 153, 333, 635, 686
CviQI GTAC 5 cut(s) 7, 45, 418, 774, 778
DdeI CTNAG 1 cut(s) 552
DpnI GATC 3 cut(s) 276, 349, 467
DpnII GATC 3 cut(s) 274, 347, 465
DraI TTTAAA 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 514
EarI CTCTTC 1 cut(s) 514
Eco105I TACGTA 1 cut(s) 777
Eco130I CCWWGG 1 cut(s) 675
Eco32I GATATC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 2 cut(s) 308, 572
EcoRI GAATTC 1 cut(s) 664
EcoRV GATATC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 3 cut(s) 428, 517, 620
FatI CATG 3 cut(s) 424, 513, 616
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 1 cut(s) 724
Fsp4HI GCNGC 1 cut(s) 151
GlaI GCGC 1 cut(s) 486
GluI GCNGC 1 cut(s) 151
HaeIII GGCC 1 cut(s) 686
HhaI GCGC 1 cut(s) 487
Hin1II CATG 3 cut(s) 428, 517, 620
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HincII GTYRAC 4 cut(s) 130, 538, 558, 748
HindII GTYRAC 4 cut(s) 130, 538, 558, 748
HinfI GANTC 1 cut(s) 358
HpaI GTTAAC 2 cut(s) 538, 558
Hpy166II GTNNAC 6 cut(s) 26, 45, 130, 538, 558, 748
Hpy188I TCNGA 3 cut(s) 330, 363, 474
Hpy188III TCNNGA 3 cut(s) 253, 310, 572
Hpy8I GTNNAC 6 cut(s) 26, 45, 130, 538, 558, 748
Hpy99I CGWCG 1 cut(s) 649
HpyAV CCTTC 1 cut(s) 450
HpyCH4III ACNGT 2 cut(s) 69, 443
HpyCH4IV ACGT 2 cut(s) 761, 776
HpyCH4V TGCA 5 cut(s) 95, 162, 345, 548, 770
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 2 cut(s) 761, 776
Hsp92II CATG 3 cut(s) 428, 517, 620
HspAI GCGC 1 cut(s) 485
KspAI GTTAAC 2 cut(s) 538, 558
Kzo9I GATC 3 cut(s) 274, 347, 465
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 5 cut(s) 61, 381, 495, 611, 756
LweI GCATC 1 cut(s) 583
MaeII ACGT 2 cut(s) 761, 776
MaeIII GTNAC 2 cut(s) 427, 762
MalI GATC 3 cut(s) 276, 349, 467
MboI GATC 3 cut(s) 274, 347, 465
MboII GAAGA 4 cut(s) 173, 224, 503, 531
MflI RGATCY 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 6 cut(s) 143, 376, 628, 649, 664, 690
MlyI GAGTC 1 cut(s) 367
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 9 cut(s) 105, 108, 114, 317, 336, 431, 561, 623, 723
MseI TTAA 4 cut(s) 204, 537, 557, 790
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 3 cut(s) 274, 347, 465
NlaIII CATG 3 cut(s) 428, 517, 620
PaeR7I CTCGAG 2 cut(s) 308, 572
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
Ppu21I YACGTR 1 cut(s) 777
PspPI GGNCC 1 cut(s) 11
PsrI GAACNNNNNNTAC 2 cut(s) 28, 60
PsuI RGATCY 1 cut(s) 465
RsaI GTAC 5 cut(s) 8, 46, 419, 775, 779
RsaNI GTAC 5 cut(s) 7, 45, 418, 774, 778
SaqAI TTAA 4 cut(s) 204, 537, 557, 790
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 3 cut(s) 274, 347, 465
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 367
SduI GDGCHC 1 cut(s) 55
SfaNI GCATC 1 cut(s) 583
SfcI CTRYAG 1 cut(s) 65
Sfr274I CTCGAG 2 cut(s) 308, 572
SinI GGWCC 1 cut(s) 11
SlaI CTCGAG 2 cut(s) 308, 572
SmlI CTYRAG 3 cut(s) 308, 413, 572
SmoI CTYRAG 3 cut(s) 308, 413, 572
SnaBI TACGTA 1 cut(s) 777
Sse9I AATT 6 cut(s) 143, 376, 628, 649, 664, 690
SsiI CCGC 1 cut(s) 150
SspI AATATT 1 cut(s) 704
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 2 cut(s) 69, 443
TaiI ACGT 2 cut(s) 764, 779
TaqI TCGA 3 cut(s) 309, 573, 647
TasI AATT 6 cut(s) 143, 376, 628, 649, 664, 690
TauI GCSGC 1 cut(s) 153
Tru1I TTAA 4 cut(s) 204, 537, 557, 790
Tru9I TTAA 4 cut(s) 204, 537, 557, 790
TscAI CASTG 2 cut(s) 55, 250
TspDTI ATGAA 4 cut(s) 155, 225, 641, 683
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 2 cut(s) 55, 250
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 2 cut(s) 664, 690
XhoI CTCGAG 2 cut(s) 308, 572
XmiI GTMKAC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.