RchiOBHm_Chr1g0363171

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000079
Physical Location & Seq
Reverse (-)
54639651 .. 54640763
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58794

Sequence Viewer

Length: 825 bp
ATGGAAAAGCTTTTTTCTTCCTGCCCTAAGCTTGTTTATCTGAGCGTACGAATCGTTTCAGTAATTGCTGCCTTTAATTTCAAGGTCTCTGCGCCTGAGCTGAAGCAATTGAAGATAATATCATATTGTCCTGGGCCTCAGTTTTATGTTGATGCCCCAAAGCTTGAAAATCTTGATCTTTTCTGTTCGTTCCCTCAGCCAAATTTTTTTTTGGAAAATGCAAAATATCTGGTCACAGCTGCTGTTGTTCTCAAAAAGAATTACAAGCTCTTCCTTATACGACATGCCTTTCCCAACAGTCTCAATATGCTTCTGGCTCAAATTTCTGAGGTCAAATATCTGTCTCTTTCGGCTCCTATTCCAGTGGATTGCTGCTTCCCTGCTTTTGGTAATTTGACCAAATTGGAGTTGGTTCTTGACCATTACGATTACTGGAAATTGCTAACAGTTGTGCTCCAAAAAGTCCCTAATCTGGAATATCTTTCTTTAGAAGAAAAAGGTATAGGTGATCATGAATGGTCATTCAATCTACCTGAGGTTGTGCCTTCATGTTTGTCATCACATCTGAAGAGTATCTATATGAGGAAATTCAAGGGGCGGCGGTCTGAGATGAAAATGGCCGAGTATTTGTTAAAAAATGGTTATCTTTTGAATCGGTTCACAATATGCTATACTGGTGTTTTGGATAAGAAAGAGGAGTTACGCAAGGAACTTTTTATGTTTCGGAGGGCAATAACTTGTTCTATTCTATTTCTTATGAGTGAAGATTTTCTCCAAGGGCAGAAGGCCTATGTTGATGGCTTTAAAACTACTCTTTTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

274

Amino Acids

31.69

Weight (kDa)

8.86

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 179 - 222 5.5e-12 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 598, 601
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 3 cut(s) 202, 321, 587
AcuI CTGAAG 2 cut(s) 122, 587
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 386, 472
AgsI TTSAA 6 cut(s) 82, 112, 167, 526, 592, 652
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 6 cut(s) 10, 31, 100, 163, 239, 268
AluI AGCT 6 cut(s) 10, 31, 100, 163, 239, 268
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 3 cut(s) 91, 305, 348
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 3 cut(s) 134, 618, 786
ApeKI GCWGC 3 cut(s) 68, 239, 372
ApoI RAATTY 3 cut(s) 202, 321, 587
Asp700I GAANNNNTTC 3 cut(s) 55, 656, 768
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 518
AxyI CCTNAGG 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 456
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 55, 226, 359
BccI CCATC 1 cut(s) 791
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 1 cut(s) 508
BcoDI GTCTC 3 cut(s) 91, 305, 348
BisI GCNGC 4 cut(s) 69, 240, 373, 599
BlsI GCNGC 4 cut(s) 70, 241, 374, 600
Bme1390I CCNGG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 142
Bpu10I CCTNAGC 3 cut(s) 27, 96, 195
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 131, 775
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 472
Bse1I ACTGG 3 cut(s) 362, 437, 679
Bse21I CCTNAGG 1 cut(s) 534
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 131, 775
BseLI CCNNNNNNNGG 2 cut(s) 386, 472
BseMII CTCAG 7 cut(s) 32, 87, 152, 209, 318, 525, 597
BseNI ACTGG 3 cut(s) 362, 437, 679
BseRI GAGGAG 1 cut(s) 710
BseXI GCAGC 3 cut(s) 55, 226, 359
BshFI GGCC 3 cut(s) 136, 620, 788
BsiHKAI GWGCWC 1 cut(s) 456
BsiWI CGTACG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 386, 472
BsmAI GTCTC 3 cut(s) 91, 305, 348
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 3 cut(s) 136, 620, 788
Bso31I GGTCTC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 175, 508
BspACI CCGC 2 cut(s) 598, 601
BspANI GGCC 3 cut(s) 136, 620, 788
BspCNI CTCAG 7 cut(s) 33, 88, 151, 208, 319, 526, 598
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 91
BsrI ACTGG 3 cut(s) 362, 437, 679
BssECI CCNNGG 2 cut(s) 131, 775
BssMI GATC 2 cut(s) 175, 508
BssT1I CCWWGG 1 cut(s) 775
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 299, 448
Bst6I CTCTTC 2 cut(s) 275, 563
BstDEI CTNAG 8 cut(s) 27, 41, 96, 138, 195, 327, 534, 606
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 2 cut(s) 178, 511
BstMAI GTCTC 3 cut(s) 91, 305, 348
BstMBI GATC 2 cut(s) 175, 508
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 3 cut(s) 55, 226, 359
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 3 cut(s) 136, 620, 788
BtsIMutI CAGTG 1 cut(s) 369
CaiI CAGNNNCTG 1 cut(s) 242
CciI TCATGA 1 cut(s) 511
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 47
CviAII CATG 3 cut(s) 284, 512, 549
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 8 cut(s) 27, 41, 96, 138, 195, 327, 534, 606
DpnI GATC 2 cut(s) 177, 510
DpnII GATC 2 cut(s) 175, 508
DraI TTTAAA 1 cut(s) 805
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 275, 563
EarI CTCTTC 2 cut(s) 275, 563
Eco130I CCWWGG 1 cut(s) 775
Eco147I AGGCCT 1 cut(s) 788
Eco31I GGTCTC 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 122, 587
Eco81I CCTNAGG 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 775
ErhI CCWWGG 1 cut(s) 775
FaeI CATG 3 cut(s) 287, 515, 552
FaqI GGGAC 1 cut(s) 449
FatI CATG 3 cut(s) 283, 511, 548
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 4 cut(s) 69, 240, 373, 599
Fsp4HI GCNGC 4 cut(s) 69, 240, 373, 599
GlaI GCGC 1 cut(s) 93
GluI GCNGC 4 cut(s) 69, 240, 373, 599
HaeIII GGCC 3 cut(s) 136, 620, 788
HhaI GCGC 1 cut(s) 94
Hin1II CATG 3 cut(s) 287, 515, 552
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HindIII AAGCTT 3 cut(s) 8, 29, 161
HinfI GANTC 2 cut(s) 51, 652
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 1 cut(s) 660
Hpy188I TCNGA 5 cut(s) 42, 328, 567, 607, 726
Hpy188III TCNNGA 4 cut(s) 173, 416, 473, 512
Hpy8I GTNNAC 1 cut(s) 660
HpyAV CCTTC 2 cut(s) 555, 778
HpyCH4III ACNGT 2 cut(s) 299, 448
HpyCH4V TGCA 1 cut(s) 221
HpyF3I CTNAG 8 cut(s) 27, 41, 96, 138, 195, 327, 534, 606
Hsp92II CATG 3 cut(s) 287, 515, 552
HspAI GCGC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 2 cut(s) 175, 508
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 2 cut(s) 358, 459
Lsp1109I GCAGC 3 cut(s) 55, 226, 359
LweI GCATC 1 cut(s) 142
MaeIII GTNAC 2 cut(s) 232, 699
MalI GATC 2 cut(s) 177, 510
MboI GATC 2 cut(s) 175, 508
MboII GAAGA 6 cut(s) 9, 124, 262, 503, 580, 776
MfeI CAATTG 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 456
MnlI CCTC 7 cut(s) 147, 204, 322, 529, 576, 688, 720
MroXI GAANNNNTTC 3 cut(s) 55, 656, 768
MseI TTAA 3 cut(s) 75, 632, 804
MspA1I CMGCKG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 132
NdeII GATC 2 cut(s) 175, 508
NlaIII CATG 3 cut(s) 287, 515, 552
NlaIV GGNNCC 1 cut(s) 354
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 287
PagI TCATGA 1 cut(s) 511
PceI AGGCCT 1 cut(s) 788
PciSI GCTCTTC 1 cut(s) 275
PdmI GAANNNNTTC 3 cut(s) 55, 656, 768
PfeI GAWTC 2 cut(s) 51, 652
Pfl23II CGTACG 1 cut(s) 46
PkrI GCNGC 4 cut(s) 70, 241, 374, 600
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspLI CGTACG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 3 cut(s) 75, 632, 804
SatI GCNGC 4 cut(s) 69, 240, 373, 599
Sau3AI GATC 2 cut(s) 175, 508
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 456
SfaNI GCATC 1 cut(s) 142
SseBI AGGCCT 1 cut(s) 788
SsiI CCGC 2 cut(s) 598, 601
StuI AGGCCT 1 cut(s) 788
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 775
TaaI ACNGT 2 cut(s) 299, 448
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 2 cut(s) 51, 652
Tru1I TTAA 3 cut(s) 75, 632, 804
Tru9I TTAA 3 cut(s) 75, 632, 804
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 3 cut(s) 68, 239, 372
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 528, 537, 626
TspRI CASTG 1 cut(s) 369
XapI RAATTY 3 cut(s) 202, 321, 587
XceI RCATGY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmnI GAANNNNTTC 3 cut(s) 55, 656, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.