FvH4_3g20210

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000079
Physical Location & Seq
Reverse (-)
13274500 .. 13277598
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20210.t1

Sequence Viewer

Length: 765 bp
ATGCTTGAAGAGGTGTCTATACGTGGATTTGACAATTTTGCTGGTGTTTGTTCTATCCCCATATTTGCGCCTGAACTAAAGACGTTGAGAATAGAAGTGGATGATTTTTATCAGAACGGCTGTTTTTCAATTAATTCTCCAAAGCTTGAATACATTGATATCAATTCAGCAGGTCTATCAAATTATCATTTGGTGAATGCTAACAGCCCAGTCAATGCCAGTATTGTTTTGAGAAAAATTTATTCTAAGCATAGAGTAGAAGACCAACTGCTGTACCTTCTGAAACATTTAGCTGCGCTTTTGTCACAAACAACTGGCAATTATCTTTTTCTTGAAATCCATGATCTGTCTCTTCAGGCTTGGTATCTTCCTTTTGATTTTGGTAATGTGAAGCAAATGAAGCTGGTACTTCATGATTGCTATTACTGGGAAGTACTAGCAGTGCTGCTGACCAAATCACCTTTTGTAGACCTTGCTCTAGAAAACAGAACTAAATATGATAAGCGTTCATTGCCACAATGGGAGCAACCAGAGTCTGCTCCTGTTTGGTTATTGAGAAACCTCAGCACCATCACTATACAGGGATTCAGGGGTCATCAGCCTGAGATGGATGTTGCACAGTATGTGTTAAAGAATGGTCTTGTTTTGAATAAGATGATAATCTACACAAGCCGTCTGTGTAAAAGAGAGAAGGAATTATACAAGGAATTTTTGATGTTTGAAAGGGGTTCGGTGACTTGTAAAGTTGAATTTATCAGAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

255

Amino Acids

29.53

Weight (kDa)

7.0

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 176 - 221 6.1e-10 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 468
AcsI RAATTY 3 cut(s) 237, 707, 749
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 3 cut(s) 275, 408, 435
AgsI TTSAA 7 cut(s) 8, 129, 149, 335, 649, 722, 749
AluBI AGCT 3 cut(s) 145, 293, 403
AluI AGCT 3 cut(s) 145, 293, 403
Alw26I GTCTC 1 cut(s) 354
AlwNI CAGNNNCTG 1 cut(s) 536
ApeKI GCWGC 2 cut(s) 293, 445
ApoI RAATTY 3 cut(s) 237, 707, 749
AseI ATTAAT 1 cut(s) 132
AspLEI GCGC 2 cut(s) 70, 298
AsuHPI GGTGA 3 cut(s) 205, 450, 745
BaeI ACNNNNGTAYC 2 cut(s) 257, 290
BarI GAAGNNNNNNTAC 2 cut(s) 683, 715
BbsI GAAGAC 1 cut(s) 267
BbvCI CCTCAGC 1 cut(s) 563
BbvI GCAGC 2 cut(s) 280, 432
BccI CCATC 2 cut(s) 578, 601
BceAI ACGGC 2 cut(s) 133, 657
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 2 cut(s) 437, 479
BfuAI ACCTGC 1 cut(s) 161
BisI GCNGC 2 cut(s) 294, 446
BlsI GCNGC 2 cut(s) 295, 447
BmcAI AGTACT 1 cut(s) 435
BmrI ACTGGG 2 cut(s) 203, 436
BmuI ACTGGG 2 cut(s) 203, 436
BpiI GAAGAC 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 563
BsaAI YACGTR 1 cut(s) 23
BsaBI GATNNNNATC 2 cut(s) 108, 659
Bse1I ACTGG 4 cut(s) 209, 219, 319, 431
Bse3DI GCAATG 1 cut(s) 509
Bse8I GATNNNNATC 2 cut(s) 108, 659
BseGI GGATG 2 cut(s) 106, 616
BseJI GATNNNNATC 2 cut(s) 108, 659
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 2 cut(s) 577, 594
BseNI ACTGG 4 cut(s) 209, 219, 319, 431
BseXI GCAGC 2 cut(s) 280, 432
BsmAI GTCTC 1 cut(s) 354
BsmI GAATGC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 343
BspCNI CTCAG 2 cut(s) 576, 595
BspHI TCATGA 1 cut(s) 412
BspMI ACCTGC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 4 cut(s) 209, 219, 319, 431
BssMI GATC 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 621
Bst6I CTCTTC 2 cut(s) 3, 357
BstBAI YACGTR 1 cut(s) 23
BstDEI CTNAG 3 cut(s) 246, 563, 603
BstF5I GGATG 2 cut(s) 106, 616
BstHHI GCGC 2 cut(s) 70, 298
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 2 cut(s) 400, 511
BstV1I GCAGC 2 cut(s) 280, 432
BstV2I GAAGAC 1 cut(s) 267
BtsCI GGATG 2 cut(s) 106, 616
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 447
BveI ACCTGC 1 cut(s) 161
CaiI CAGNNNCTG 1 cut(s) 536
CciI TCATGA 1 cut(s) 412
CfoI GCGC 2 cut(s) 70, 298
Csp6I GTAC 3 cut(s) 274, 407, 434
CviAII CATG 2 cut(s) 341, 413
CviJI RGCY 8 cut(s) 120, 145, 207, 293, 359, 403, 601, 672
CviKI_1 RGCY 8 cut(s) 120, 145, 207, 293, 359, 403, 601, 672
CviQI GTAC 3 cut(s) 274, 407, 434
DdeI CTNAG 3 cut(s) 246, 563, 603
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eam1104I CTCTTC 2 cut(s) 3, 357
EarI CTCTTC 2 cut(s) 3, 357
Eco32I GATATC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 338
EcoRV GATATC 1 cut(s) 160
FaeI CATG 2 cut(s) 344, 416
FaiI YATR 9 cut(s) 20, 62, 252, 342, 414, 498, 578, 624, 700
FatI CATG 2 cut(s) 340, 412
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 2 cut(s) 294, 446
FokI GGATG 2 cut(s) 113, 623
Fsp4HI GCNGC 2 cut(s) 294, 446
FspBI CTAG 2 cut(s) 437, 479
GlaI GCGC 2 cut(s) 69, 297
GluI GCNGC 2 cut(s) 294, 446
HhaI GCGC 2 cut(s) 70, 298
Hin1II CATG 2 cut(s) 344, 416
Hin6I GCGC 2 cut(s) 68, 296
HinP1I GCGC 2 cut(s) 68, 296
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 2 cut(s) 533, 585
HphI GGTGA 3 cut(s) 205, 450, 745
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 3 cut(s) 114, 282, 758
Hpy188III TCNNGA 3 cut(s) 332, 413, 479
Hpy8I GTNNAC 1 cut(s) 469
HpyAV CCTTC 2 cut(s) 287, 685
HpyCH4III ACNGT 1 cut(s) 621
HpyCH4IV ACGT 2 cut(s) 22, 83
HpyCH4V TGCA 1 cut(s) 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 400, 511
HpyF3I CTNAG 3 cut(s) 246, 563, 603
HpySE526I ACGT 2 cut(s) 22, 83
Hsp92II CATG 2 cut(s) 344, 416
HspAI GCGC 2 cut(s) 68, 296
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 2 cut(s) 523, 544
Lsp1109I GCAGC 2 cut(s) 280, 432
MaeI CTAG 2 cut(s) 437, 479
MaeII ACGT 2 cut(s) 22, 83
MaeIII GTNAC 2 cut(s) 303, 733
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 4 cut(s) 20, 272, 344, 359
MlyI GAGTC 1 cut(s) 542
MnlI CCTC 2 cut(s) 4, 572
MseI TTAA 2 cut(s) 132, 629
Mva1269I GAATGC 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 400, 511
NdeII GATC 1 cut(s) 343
NlaIII CATG 2 cut(s) 344, 416
NmuCI GTSAC 2 cut(s) 303, 733
PagI TCATGA 1 cut(s) 412
PctI GAATGC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 585
PkrI GCNGC 2 cut(s) 295, 447
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Ppu21I YACGTR 1 cut(s) 23
PshBI ATTAAT 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 536
RsaI GTAC 3 cut(s) 275, 408, 435
RsaNI GTAC 3 cut(s) 274, 407, 434
SaqAI TTAA 2 cut(s) 132, 629
SatI GCNGC 2 cut(s) 294, 446
Sau3AI GATC 1 cut(s) 343
ScaI AGTACT 1 cut(s) 435
SchI GAGTC 1 cut(s) 542
SspMI CTAG 2 cut(s) 437, 479
TaaI ACNGT 1 cut(s) 621
TaiI ACGT 2 cut(s) 25, 86
TatI WGTACW 1 cut(s) 433
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 2 cut(s) 132, 629
Tru9I TTAA 2 cut(s) 132, 629
TscAI CASTG 1 cut(s) 447
TseFI GTSAC 2 cut(s) 303, 733
TseI GCWGC 2 cut(s) 293, 445
Tsp45I GTSAC 2 cut(s) 303, 733
TspDTI ATGAA 3 cut(s) 401, 413, 498
TspRI CASTG 1 cut(s) 447
VspI ATTAAT 1 cut(s) 132
XapI RAATTY 3 cut(s) 237, 707, 749
XbaI TCTAGA 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 2 cut(s) 437, 479
ZrmI AGTACT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.