FvH4_5g02280

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000079
Physical Location & Seq
Reverse (-)
1401152 .. 1403069
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02280.t1

Sequence Viewer

Length: 1497 bp
ATGGCTTCAAACTCAAAGCGTCTCAAATCATGCTCAAACTCAAAGCGTCTCAAACCATGCTCAAACCATGAGGATAGGATCAGTGGGTTGCCAGATGAAATTCTTTGCCACATTCTCTCCTTCCTTTTCACCAGAGAGGCTGTGAAGACTAGTGTTTTATCTCATAGATGGACAAATGTGTGGACTTCTGTTCCCATTCTAGATTTGGATGAAGAAGAATTTCACATAGACTTTAAACGTCGTGCCTTGCCAAAAGGCTCACAACTAATAAGACATGTCCCTGATTGGTTTGCACAGTATGTGAATCGTGTGCTTTTGTTTCGCTGCCCTGGAGACATTCAAAGATTCCGCCTTGTAGTTGGAAGGATGGATGATGTTTCTCGTATTTATGCTTGGATTGCCACTGCCATTAGGCGTAATGTTGTGGAACTTGATCTTGCTGTCGGCATAACTAGGAAACCAAATTTTGAGATCCCCAAAAGGCTTTTCATGTGCAGCACATTGGTCCGTTTGAAGCTATGGCTGCACAGATATACTAGGGTCATGACTCCTACTAGTTCAAACTGTTTCCCGAGCCTCAAGTTCTTTCATGTTGCAGTTCTGAATCCTGGTTCTGACTCAATGGTGAAACTCTTTTCTCGATGTTTACCTGTGCTTGAAGAGCTGATTATTGATGGAAAACTAGACACAACAGCTTTTAATCCGAATATATCTGCACCCAAACTGAAGAGACTACAAATTAAGCTCGCTGTCCATAAGGTTAATATGATTGCTGCTGCTGATCACTATGTATATTATGTGTGCCGAACTTTCATTAATGTTGATGCTCCAAATCTTGAAGAGTTTGATATCTGCTTTGATGCTATGGTGAGTTTTTCTTTGAAGAACGTCAAACGTCTACGCAAAGCCAAGATAGATTTCTTTAAAGAGATTATGGACCATGATTGTTTCCCTGGCCTAGCGGATCGCATACACCAGATTTGTGCAGGAATCTGTGATGCTAAGCTCTTGACATTGGTTATCGCCGTCTTCTGCATGCCTACATTTAAGAATTTGAACAAGTTGGAGCTACAACTTCAAACCTGTCGATGTTTGCAATCACTGGCAACTTTGCTCAGGATATCACCAAATTTGGAACATCTCAGGATATTGCCAACAAGGGAACACATGCATGTCAATGAGTACAACTATTGTGATGATGACAATGAGGATGTTCTTGTACATGAATGGGATGCACCGGAGTTCGCACATATTTCTTTGATTTCACACCTCAAGACTGTTTGCCTATGGGATTTCAAGGGGTGTCCAAATGAGGTGGAAGTGGCAAAGTACTTGGTGAAGCATGGCAAATCTTTGAATAAGGTGACTATTCATTTTCGCTTTGGTGAAAACAAAGAGATGAAGTCACAGTCTGCTATCACCTTGTTTTCGTCGCAATTTCTGAAGTTCCCGAGGGGTTCCAAGACTTGTGAAGTTGAATTTCAAATGATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

499

Amino Acids

57.58

Weight (kDa)

8.97

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 66 8.3e-07 F-box domain
LRR_At5g56370 PF24758 131 - 383 2.4e-10 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 420 - 457 2.4e-09 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 898
AciI CCGC 2 cut(s) 349, 962
AclWI GGATC 3 cut(s) 86, 466, 972
AcsI RAATTY 6 cut(s) 99, 218, 463, 1051, 1129, 1478
AcuI CTGAAG 2 cut(s) 746, 1463
AfaI GTAC 3 cut(s) 1184, 1221, 1331
AflIII ACRYGT 1 cut(s) 274
AhlI ACTAGT 2 cut(s) 149, 554
AjnI CCWGG 3 cut(s) 328, 607, 952
AjuI GAANNNNNNNTTGG 4 cut(s) 470, 502, 902, 934
AluBI AGCT 6 cut(s) 517, 664, 695, 745, 1006, 1069
AluI AGCT 6 cut(s) 517, 664, 695, 745, 1006, 1069
Alw26I GTCTC 4 cut(s) 26, 53, 327, 724
AlwI GGATC 3 cut(s) 86, 466, 972
Ama87I CYCGRG 2 cut(s) 571, 1450
AoxI GGCC 1 cut(s) 955
ApeKI GCWGC 5 cut(s) 324, 495, 523, 773, 776
ApoI RAATTY 6 cut(s) 99, 218, 463, 1051, 1129, 1478
AseI ATTAAT 1 cut(s) 816
Asp700I GAANNNNTTC 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 505, 937
AsuHPI GGTGA 8 cut(s) 121, 637, 880, 1116, 1348, 1375, 1397, 1411
AvaI CYCGRG 2 cut(s) 571, 1450
AvaII GGWCC 2 cut(s) 505, 937
BbsI GAAGAC 2 cut(s) 152, 1021
BbvI GCAGC 5 cut(s) 311, 507, 510, 760, 763
BccI CCATC 3 cut(s) 162, 361, 668
BceAI ACGGC 1 cut(s) 1010
BciT130I CCWGG 3 cut(s) 330, 609, 954
BclI TGATCA 2 cut(s) 781, 1488
BcoDI GTCTC 4 cut(s) 26, 53, 327, 724
BcuI ACTAGT 2 cut(s) 149, 554
BfaI CTAG 7 cut(s) 150, 200, 453, 537, 555, 683, 959
BisI GCNGC 5 cut(s) 325, 496, 524, 774, 777
BlpI GCTNAGC 1 cut(s) 1002
BlsI GCNGC 5 cut(s) 326, 497, 525, 775, 778
BmcAI AGTACT 1 cut(s) 1331
Bme1390I CCNGG 3 cut(s) 330, 609, 954
Bme18I GGWCC 2 cut(s) 505, 937
BmeT110I CYCGRG 2 cut(s) 571, 1450
BmgT120I GGNCC 2 cut(s) 505, 937
BmiI GGNNCC 1 cut(s) 1459
BmrFI CCNGG 3 cut(s) 330, 609, 954
BmsI GCATC 4 cut(s) 814, 850, 988, 1222
BpiI GAAGAC 2 cut(s) 152, 1021
BpmI CTGGAG 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 1115
Bpu1102I GCTNAGC 1 cut(s) 1002
BpuEI CTTGAG 2 cut(s) 563, 1256
BsaJI CCNNGG 3 cut(s) 328, 952, 1451
BsaWI WCCGGW 1 cut(s) 1237
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse1I ACTGG 1 cut(s) 1107
BseBI CCWGG 3 cut(s) 330, 609, 954
BseDI CCNNGG 3 cut(s) 328, 952, 1451
BseGI GGATG 5 cut(s) 214, 372, 376, 1216, 1237
BseMII CTCAG 2 cut(s) 1129, 1156
BseNI ACTGG 1 cut(s) 1107
BseXI GCAGC 5 cut(s) 311, 507, 510, 760, 763
BsgI GTGCAG 4 cut(s) 509, 514, 699, 1005
BshFI GGCC 1 cut(s) 957
BsiHKCI CYCGRG 2 cut(s) 571, 1450
BsiSI CCGG 1 cut(s) 1238
BslFI GGGAC 1 cut(s) 263
BsmAI GTCTC 4 cut(s) 26, 53, 327, 724
BsmBI CGTCTC 2 cut(s) 26, 53
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 1 cut(s) 957
BsoBI CYCGRG 2 cut(s) 571, 1450
Bsp1407I TGTACA 1 cut(s) 1219
Bsp143I GATC 6 cut(s) 78, 433, 471, 781, 964, 1488
Bsp1720I GCTNAGC 1 cut(s) 1002
BspACI CCGC 2 cut(s) 349, 962
BspANI GGCC 1 cut(s) 957
BspCNI CTCAG 2 cut(s) 1128, 1155
BspHI TCATGA 1 cut(s) 543
BspLI GGNNCC 1 cut(s) 1459
BspPI GGATC 3 cut(s) 86, 466, 972
BspQI GCTCTTC 1 cut(s) 654
BsrGI TGTACA 1 cut(s) 1219
BsrI ACTGG 1 cut(s) 1107
BssECI CCNNGG 3 cut(s) 328, 952, 1451
BssMI GATC 6 cut(s) 78, 433, 471, 781, 964, 1488
Bst2UI CCWGG 3 cut(s) 330, 609, 954
Bst4CI ACNGT 4 cut(s) 297, 566, 1279, 1410
Bst6I CTCTTC 3 cut(s) 654, 722, 834
BstAUI TGTACA 1 cut(s) 1219
BstC8I GCNNGC 2 cut(s) 747, 1037
BstDEI CTNAG 3 cut(s) 1002, 1115, 1142
BstF5I GGATG 5 cut(s) 214, 372, 376, 1216, 1237
BstKTI GATC 6 cut(s) 81, 436, 474, 784, 967, 1491
BstMAI GTCTC 4 cut(s) 26, 53, 327, 724
BstMBI GATC 6 cut(s) 78, 433, 471, 781, 964, 1488
BstMWI GCNNNNNNNGC 3 cut(s) 398, 523, 661
BstNI CCWGG 3 cut(s) 330, 609, 954
BstNSI RCATGY 4 cut(s) 278, 1039, 1171, 1175
BstSCI CCNGG 3 cut(s) 328, 607, 952
BstV1I GCAGC 5 cut(s) 311, 507, 510, 760, 763
BstV2I GAAGAC 2 cut(s) 152, 1021
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BsuRI GGCC 1 cut(s) 957
BtsCI GGATG 5 cut(s) 214, 372, 376, 1216, 1237
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 3 cut(s) 88, 402, 1100
Cac8I GCNNGC 2 cut(s) 747, 1037
CciI TCATGA 1 cut(s) 543
Cfr13I GGNCC 2 cut(s) 505, 937
CseI GACGC 2 cut(s) 8, 35
Csp6I GTAC 3 cut(s) 1183, 1220, 1330
CspCI CAANNNNNGTGG 2 cut(s) 1296, 1331
CviQI GTAC 3 cut(s) 1183, 1220, 1330
DdeI CTNAG 3 cut(s) 1002, 1115, 1142
DpnI GATC 6 cut(s) 80, 435, 473, 783, 966, 1490
DpnII GATC 6 cut(s) 78, 433, 471, 781, 964, 1488
DraI TTTAAA 2 cut(s) 235, 925
Eam1104I CTCTTC 3 cut(s) 654, 722, 834
EarI CTCTTC 3 cut(s) 654, 722, 834
EciI GGCGGA 1 cut(s) 338
Eco32I GATATC 2 cut(s) 850, 1122
Eco47I GGWCC 2 cut(s) 505, 937
Eco57I CTGAAG 2 cut(s) 746, 1463
Eco88I CYCGRG 2 cut(s) 571, 1450
EcoRII CCWGG 3 cut(s) 328, 607, 952
EcoRV GATATC 2 cut(s) 850, 1122
EcoT22I ATGCAT 1 cut(s) 1173
Esp3I CGTCTC 2 cut(s) 26, 53
FaqI GGGAC 1 cut(s) 263
FbaI TGATCA 2 cut(s) 781, 1488
FblI GTMKAC 1 cut(s) 898
Fnu4HI GCNGC 5 cut(s) 325, 496, 524, 774, 777
FokI GGATG 5 cut(s) 221, 379, 383, 1223, 1244
Fsp4HI GCNGC 5 cut(s) 325, 496, 524, 774, 777
FspBI CTAG 7 cut(s) 150, 200, 453, 537, 555, 683, 959
GluI GCNGC 5 cut(s) 325, 496, 524, 774, 777
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 957
HapII CCGG 1 cut(s) 1238
HgaI GACGC 2 cut(s) 8, 35
HinfI GANTC 6 cut(s) 304, 345, 547, 604, 617, 990
HpaII CCGG 1 cut(s) 1238
HphI GGTGA 8 cut(s) 121, 637, 880, 1116, 1348, 1375, 1397, 1411
Hpy166II GTNNAC 3 cut(s) 183, 647, 899
Hpy188I TCNGA 4 cut(s) 603, 616, 705, 1443
Hpy8I GTNNAC 3 cut(s) 183, 647, 899
Hpy99I CGWCG 2 cut(s) 243, 1435
HpyAV CCTTC 2 cut(s) 130, 357
HpyCH4III ACNGT 4 cut(s) 297, 566, 1279, 1410
HpyCH4IV ACGT 3 cut(s) 238, 888, 895
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 523, 661
HpyF3I CTNAG 3 cut(s) 1002, 1115, 1142
HpySE526I ACGT 3 cut(s) 238, 888, 895
Ksp22I TGATCA 2 cut(s) 781, 1488
Kzo9I GATC 6 cut(s) 78, 433, 471, 781, 964, 1488
LguI GCTCTTC 1 cut(s) 654
LmnI GCTCC 2 cut(s) 832, 1066
Lsp1109I GCAGC 5 cut(s) 311, 507, 510, 760, 763
LweI GCATC 4 cut(s) 814, 850, 988, 1222
MaeI CTAG 7 cut(s) 150, 200, 453, 537, 555, 683, 959
MaeII ACGT 3 cut(s) 238, 888, 895
MaeIII GTNAC 2 cut(s) 1363, 1404
MalI GATC 6 cut(s) 80, 435, 473, 783, 966, 1490
MboI GATC 6 cut(s) 78, 433, 471, 781, 964, 1488
MboII GAAGA 8 cut(s) 157, 224, 227, 671, 739, 851, 895, 1021
MflI RGATCY 1 cut(s) 471
MluCI AATT 8 cut(s) 99, 218, 463, 738, 1051, 1129, 1436, 1478
MlyI GAGTC 2 cut(s) 541, 611
MmeI TCCRAC 2 cut(s) 340, 1044
MnlI CCTC 7 cut(s) 64, 130, 587, 1201, 1280, 1306, 1446
Mph1103I ATGCAT 1 cut(s) 1173
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 7 cut(s) 234, 699, 741, 762, 816, 924, 1047
MslI CAYNNNNRTG 2 cut(s) 1170, 1176
MspI CCGG 1 cut(s) 1238
MspR9I CCNGG 3 cut(s) 330, 609, 954
MvaI CCWGG 3 cut(s) 330, 609, 954
MwoI GCNNNNNNNGC 3 cut(s) 398, 523, 661
NdeII GATC 6 cut(s) 78, 433, 471, 781, 964, 1488
NlaIV GGNNCC 1 cut(s) 1459
NmuCI GTSAC 2 cut(s) 1363, 1404
NsiI ATGCAT 1 cut(s) 1173
NspI RCATGY 4 cut(s) 278, 1039, 1171, 1175
PaeI GCATGC 1 cut(s) 1039
PagI TCATGA 1 cut(s) 543
PciI ACATGT 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 4 cut(s) 304, 345, 604, 990
PkrI GCNGC 5 cut(s) 326, 497, 525, 775, 778
PleI GAGTC 2 cut(s) 541, 611
PpsI GAGTC 2 cut(s) 541, 611
PscI ACATGT 1 cut(s) 274
PshBI ATTAAT 1 cut(s) 816
Psp6I CCWGG 3 cut(s) 328, 607, 952
PspGI CCWGG 3 cut(s) 328, 607, 952
PspN4I GGNNCC 1 cut(s) 1459
PspPI GGNCC 2 cut(s) 505, 937
PsuI RGATCY 1 cut(s) 471
RsaI GTAC 3 cut(s) 1184, 1221, 1331
RsaNI GTAC 3 cut(s) 1183, 1220, 1330
RseI CAYNNNNRTG 2 cut(s) 1170, 1176
SapI GCTCTTC 1 cut(s) 654
SaqAI TTAA 7 cut(s) 234, 699, 741, 762, 816, 924, 1047
SatI GCNGC 5 cut(s) 325, 496, 524, 774, 777
Sau3AI GATC 6 cut(s) 78, 433, 471, 781, 964, 1488
Sau96I GGNCC 2 cut(s) 505, 937
ScaI AGTACT 1 cut(s) 1331
SchI GAGTC 2 cut(s) 541, 611
ScrFI CCNGG 3 cut(s) 330, 609, 954
SfaNI GCATC 4 cut(s) 814, 850, 988, 1222
SinI GGWCC 2 cut(s) 505, 937
SmiMI CAYNNNNRTG 2 cut(s) 1170, 1176
SmlI CTYRAG 2 cut(s) 578, 1271
SmoI CTYRAG 2 cut(s) 578, 1271
SpeI ACTAGT 2 cut(s) 149, 554
SphI GCATGC 1 cut(s) 1039
Sse9I AATT 8 cut(s) 99, 218, 463, 738, 1051, 1129, 1436, 1478
SsiI CCGC 2 cut(s) 349, 962
SspMI CTAG 7 cut(s) 150, 200, 453, 537, 555, 683, 959
StyD4I CCNGG 3 cut(s) 328, 607, 952
TaaI ACNGT 4 cut(s) 297, 566, 1279, 1410
TaiI ACGT 3 cut(s) 241, 891, 898
TaqI TCGA 2 cut(s) 640, 1087
TasI AATT 8 cut(s) 99, 218, 463, 738, 1051, 1129, 1436, 1478
TatI WGTACW 3 cut(s) 1182, 1219, 1329
TfiI GAWTC 4 cut(s) 304, 345, 604, 990
Tru1I TTAA 7 cut(s) 234, 699, 741, 762, 816, 924, 1047
Tru9I TTAA 7 cut(s) 234, 699, 741, 762, 816, 924, 1047
TscAI CASTG 3 cut(s) 88, 409, 1107
TseFI GTSAC 2 cut(s) 1363, 1404
TseI GCWGC 5 cut(s) 324, 495, 523, 773, 776
Tsp45I GTSAC 2 cut(s) 1363, 1404
TspDTI ATGAA 8 cut(s) 111, 225, 478, 578, 802, 1239, 1361, 1415
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 3 cut(s) 88, 409, 1107
VpaK11BI GGWCC 2 cut(s) 505, 937
VspI ATTAAT 1 cut(s) 816
XapI RAATTY 6 cut(s) 99, 218, 463, 1051, 1129, 1478
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 4 cut(s) 278, 1039, 1171, 1175
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 898
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 7 cut(s) 150, 200, 453, 537, 555, 683, 959
ZrmI AGTACT 1 cut(s) 1331
Zsp2I ATGCAT 1 cut(s) 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.