Rorug01G0032500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000079
Physical Location & Seq
Reverse (-)
5506848 .. 5510894
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0032500.1

Sequence Viewer

Length: 2568 bp
ATGCCAATGGATATTAGAACCAGAAGTGTCTGTGCTTTAAATGGCTCCATGTTCTTCTTCGTTCTGATTTTCTTATTCAGCTTGCTTCCATTCCATTATCATTGCGCTGGCATTGATGAGATAACTCCTTCGCAACCATTAGCGCAAGGACAAACTCTAGTTTCCCCTGGCCACATTTTTGAGTTAGGCTTCTTCAGTCCTAATAACTCTGCTAACAAGTATGTGGGGATATGGCACAAAGATATATCTCCGCGAAAAGTTGTATGGGTGGCCAACAGAGAAAATCCTCTTGCAGCTACAGACACCTCGGCGAGCTTGACTGTTAGCAGCAATGGGAATCTGAAGCTTGTTGATGGGAAACAGAAGTCTATTTGGTCTACCAATGTTACTTTGGTGTCATCATTGGATAATAGTTCATTTGCTGCAGCTCTTTTAGACAATGGAAACTTTGTTGTCAATGATCATCTGGGAGCTGAGTTATGGCAGAGCTTTGATCATCCTGGTGACACAGTCCTGCCAAACATGGTTTTGCGTTACGATAAGTCTGGAAAGGGGAACTTCTTGAGTTCTTGGAAAGCAGAGAATGATCCATCACCAGGGAGATTCTTGCTTGGATTGGCGCCACAGACGCCGTCACAAGTGTTCATTTGGATCAATAATGGATCAAATGATTCACATTCAGTTCCTTACTGGAGAAGTGGACCATGGGATAAGTCAAGCTTCATTGGTGTACCAGAAATGGATCATCGATATATAAATGGATTTAGTGTAGATGATAACTTAAAGCAGGGCACGCAGGATTTTTCTTATAGTTTATATGACAAACCTGTGGCATACATATACATATCTCCAGAAGGAATAGTGAGGCTTACATTTTCGAAGAATGATGGGAAGTGGTATGTTTATTGGCAGACACCTAAGAATCCATGTGACATTTATGGAGCTTGTGGACCTTTTGGAGTTTGCAAAGCTTCTGCATCTCCAATCTGTAAGTGTTTGAAAGGTTTTGTACCGAAGTCAAGCACGCAATGGAGCAAAGGAAACTGGACAGGAGGGTGTGAGAGGCAGACCAAATTATTTTGTGAGAGACAAACAAATAAGTCAGTCTCATCAAGAGGAAAACAAGTGGATGATGATGGGTTTTGGAAGATGGTGAAGTTGAAAATACCAGATTCTCATGAGTTCGTTACTGCTTTCAATGCCGAAGAAACGTCCGACGACTGCAAATTACGGTGCCTGAACAACTGTTCTTGCCTTGCTTATGCATTTGTCAATAATATAGGGTGTTTGGTGTGGTCCAAAGATCTTATTGATATACAGCAGTTTTCGGCATCTGTCGGAGTAGATCTTTATATTCGCCTAGCACGCTCCGAACTAGGTGAAGGAAAGCCAATAAAGTTAATCGCCAGCCTTACAGCTATTGGTTTTGTGAGTATCTTGGCAGCGATAGTATTCGGATTTTACAGGAGGCAAGCTAACCAGAAGAGACAGAACTTTAAATCGACTGGTATGATTAAGAGTTCAAGAGATGGTCTCCGAGAATATATAGGAAAGCATGATCCATCAGAGCTAAAGATATATGATTTTGATAGCATACTAATTGCTACAAACAATTTCAATCTCGCAAACAAACTTGGGCAAGGAGGATTTGGCCCAGTTTATAAGGGTATGCTACAAGATGGGAAGGAAGTAGCTGTCAAGAGACTATCTAGTAGCTCAGGACAAGGCATTGAAGAGTTCAAGAATGAGATGCTGTTGATCTCCAATCTTCAACATAAAAATCTAGTTAGGATCATGGGTTGCTGCGTTAAAGAGGATGAGAAGTTACTGATTTACGAGTTCATGCCAAACAAAAGCTTGGATACTTTTCTATTCGATACGAGGAAGAGAGCCGTGCTTGATTGGGTGACACGCTTTAATATTATTCAGGGTGTTGCTAGAGGGCTTCTTTATCTTCATCATGATTCGTATGTGAAGGTAATACATAGAGATCTGAAAGTCAGCAACATTCTCTTGGATGAGAAAATGAATCCAAAAATTTCAGATTTTGGATTGGCACGCATAGTTGAAGGAACACAAAATCTAGAAAATACTCAAAAAGTTGTGGGAACACGTGGCTACATGTCTCCTGAGTATGCCATGGGGGGGATTTTTTCTGAAAAATCTGATGTCTACAGCTTCGGGGTTTTGGTGTTGGAGATTATTAGCAGCAAGAAGAATACCAGCTTCTCTTTATATGACCAACAGCTAGGCTTTCTAGCCTATGCATGGAACTTGTGGAATGAAGGCAGGGGGTTGGAGTTGGTAGATGAAATATTGGGCGATTCGTATTCCTCATTGGAAGTACTAAAATGCATACATATCGGGCTTCTGTGTGTACAAGACAATGCTGTGGATAGGCCAACCATGGCAGATATAGCTTTGATGTTAAGTAGTGAGAAAGATGGTCCACAACCTAAACTGCCTGTATTCACTATCCAAAACACAGCTCATTATCCTCAACCACACTCTGAGAATACAAATTCCTCCAAAAATGAAGCTAGCATTACAATGATTGAAGGACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

855

Amino Acids

95.52

Weight (kDa)

7.49

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 87 - 192 1.5e-28 D-mannose binding lectin
S_locus_glycop PF00954 231 - 340 1.8e-29 S-locus glycoprotein domain
PAN_2 PF08276 377 - 439 1.2e-15 PAN-like domain
PK_Tyr_Ser-Thr PF07714 540 - 741 1.4e-47 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 540 - 739 8.3e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1662
AccB1I GGYRCC 2 cut(s) 619, 1233
AccI GTMKAC 2 cut(s) 377, 2172
AccII CGCG 1 cut(s) 253
AciI CCGC 1 cut(s) 251
AclWI GGATC 6 cut(s) 581, 659, 670, 750, 1553, 1799
AcoI YGGCCR 2 cut(s) 169, 270
AcsI RAATTY 2 cut(s) 2037, 2521
AcuI CTGAAG 2 cut(s) 178, 362
AcvI CACGTG 1 cut(s) 2114
AcyI GRCGYC 2 cut(s) 620, 629
AfaI GTAC 4 cut(s) 732, 1011, 2346, 2379
AfiI CCNNNNNNNGG 3 cut(s) 596, 2145, 2268
AflIII ACRYGT 2 cut(s) 2111, 2121
AjnI CCWGG 3 cut(s) 166, 499, 595
Alw26I GTCTC 6 cut(s) 1081, 1111, 1480, 1538, 1696, 2130
AlwI GGATC 6 cut(s) 581, 659, 670, 750, 1553, 1799
AoxI GGCC 4 cut(s) 169, 270, 1651, 2399
ApeKI GCWGC 7 cut(s) 293, 327, 422, 425, 1442, 1803, 2208
ApoI RAATTY 2 cut(s) 2037, 2521
AspLEI GCGC 3 cut(s) 107, 145, 622
AspS9I GGNCC 5 cut(s) 701, 950, 1296, 1652, 2447
AsuHPI GGTGA 5 cut(s) 515, 585, 1165, 1391, 1918
AsuII TTCGAA 1 cut(s) 878
AsuNHI GCTAGC 1 cut(s) 2540
AvaII GGWCC 4 cut(s) 701, 950, 1296, 2447
BaeGI GKGCMC 1 cut(s) 794
BalI TGGCCA 2 cut(s) 171, 272
BanI GGYRCC 2 cut(s) 619, 1233
BbrPI CACGTG 1 cut(s) 2114
BbvI GCAGC 7 cut(s) 305, 339, 409, 437, 1454, 1790, 2220
BccI CCATC 9 cut(s) 347, 598, 881, 1130, 1144, 1523, 1570, 1673, 2438
BceAI ACGGC 2 cut(s) 616, 1877
BcgI CGANNNNNNTGC 2 cut(s) 2344, 2378
BciT130I CCWGG 3 cut(s) 168, 501, 597
BciVI GTATCC 1 cut(s) 1855
BclI TGATCA 2 cut(s) 460, 493
BcoDI GTCTC 6 cut(s) 1081, 1111, 1480, 1538, 1696, 2130
BfmI CTRYAG 3 cut(s) 297, 423, 2173
BfoI RGCGCY 1 cut(s) 623
BfuI GTATCC 1 cut(s) 1855
BglII AGATCT 3 cut(s) 1303, 1345, 1990
BisI GCNGC 7 cut(s) 294, 328, 423, 426, 1443, 1804, 2209
BlsI GCNGC 7 cut(s) 295, 329, 424, 427, 1444, 1805, 2210
BmcAI AGTACT 1 cut(s) 2346
Bme1390I CCNGG 3 cut(s) 168, 501, 597
Bme18I GGWCC 4 cut(s) 701, 950, 1296, 2447
BmgT120I GGNCC 5 cut(s) 701, 950, 1296, 1652, 2447
BmiI GGNNCC 3 cut(s) 46, 621, 1235
BmrFI CCNGG 3 cut(s) 168, 501, 597
BmrI ACTGGG 1 cut(s) 1649
BmsI GCATC 3 cut(s) 986, 1340, 1740
BmtI GCTAGC 1 cut(s) 2544
BmuI ACTGGG 1 cut(s) 1649
BplI GAGNNNNNCTC 2 cut(s) 1518, 1550
BpmI CTGGAG 2 cut(s) 712, 834
Bpu10I CCTNAGC 1 cut(s) 1717
Bpu14I TTCGAA 1 cut(s) 878
BpuEI CTTGAG 1 cut(s) 583
Bsa29I ATCGAT 1 cut(s) 748
BsaAI YACGTR 1 cut(s) 2114
BsaHI GRCGYC 2 cut(s) 620, 629
BsaI GGTCTC 1 cut(s) 1538
BsaJI CCNNGG 6 cut(s) 166, 306, 596, 704, 2139, 2406
Bsc4I CCNNNNNNNGG 3 cut(s) 596, 2145, 2268
Bse1I ACTGG 4 cut(s) 695, 1049, 1510, 1655
Bse3DI GCAATG 3 cut(s) 100, 337, 1034
BseBI CCWGG 3 cut(s) 168, 501, 597
BseCI ATCGAT 1 cut(s) 748
BseDI CCNNGG 6 cut(s) 166, 306, 596, 704, 2139, 2406
BseGI GGATG 4 cut(s) 496, 1135, 1822, 2023
BseLI CCNNNNNNNGG 3 cut(s) 596, 2145, 2268
BseMI GCAATG 3 cut(s) 100, 337, 1034
BseMII CTCAG 4 cut(s) 465, 1731, 2121, 2502
BseNI ACTGG 4 cut(s) 695, 1049, 1510, 1655
BseSI GKGCMC 1 cut(s) 794
BseXI GCAGC 7 cut(s) 305, 339, 409, 437, 1454, 1790, 2220
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 4 cut(s) 171, 272, 1653, 2401
BshNI GGYRCC 2 cut(s) 619, 1233
BshVI ATCGAT 1 cut(s) 748
BslI CCNNNNNNNGG 3 cut(s) 596, 2145, 2268
BsmAI GTCTC 6 cut(s) 1081, 1111, 1480, 1538, 1696, 2130
BsnI GGCC 4 cut(s) 171, 272, 1653, 2401
Bso31I GGTCTC 1 cut(s) 1538
Bsp119I TTCGAA 1 cut(s) 878
Bsp1286I GDGCHC 1 cut(s) 794
Bsp1407I TGTACA 1 cut(s) 2377
Bsp19I CCATGG 3 cut(s) 704, 2139, 2406
BspACI CCGC 1 cut(s) 251
BspANI GGCC 4 cut(s) 171, 272, 1653, 2401
BspCNI CTCAG 4 cut(s) 466, 1730, 2122, 2503
BspDI ATCGAT 1 cut(s) 748
BspFNI CGCG 1 cut(s) 253
BspHI TCATGA 2 cut(s) 1177, 1960
BspLI GGNNCC 3 cut(s) 46, 621, 1235
BspMAI CTGCAG 1 cut(s) 427
BspOI GCTAGC 1 cut(s) 2544
BspPI GGATC 6 cut(s) 581, 659, 670, 750, 1553, 1799
BspT104I TTCGAA 1 cut(s) 878
BspT107I GGYRCC 2 cut(s) 619, 1233
BspTNI GGTCTC 1 cut(s) 1538
BsrDI GCAATG 3 cut(s) 100, 337, 1034
BsrGI TGTACA 1 cut(s) 2377
BsrI ACTGG 4 cut(s) 695, 1049, 1510, 1655
BssECI CCNNGG 6 cut(s) 166, 306, 596, 704, 2139, 2406
BssNI GRCGYC 2 cut(s) 620, 629
BssT1I CCWWGG 3 cut(s) 704, 2139, 2406
Bst2UI CCWGG 3 cut(s) 168, 501, 597
Bst4CI ACNGT 4 cut(s) 322, 511, 1233, 1247
Bst6I CTCTTC 3 cut(s) 1478, 1728, 1880
BstACI GRCGYC 2 cut(s) 620, 629
BstAUI TGTACA 1 cut(s) 2377
BstBAI YACGTR 1 cut(s) 2114
BstBI TTCGAA 1 cut(s) 878
BstDEI CTNAG 5 cut(s) 474, 918, 1717, 2130, 2511
BstDSI CCRYGG 3 cut(s) 704, 2139, 2406
BstF5I GGATG 4 cut(s) 496, 1135, 1822, 2023
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 623
BstHHI GCGC 3 cut(s) 107, 145, 622
BstMAI GTCTC 6 cut(s) 1081, 1111, 1480, 1538, 1696, 2130
BstMWI GCNNNNNNNGC 5 cut(s) 628, 793, 1199, 1365, 2417
BstNI CCWGG 3 cut(s) 168, 501, 597
BstNSI RCATGY 1 cut(s) 2125
BstSCI CCNGG 3 cut(s) 166, 499, 595
BstSFI CTRYAG 3 cut(s) 297, 423, 2173
BstSLI GKGCMC 1 cut(s) 794
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 7 cut(s) 305, 339, 409, 437, 1454, 1790, 2220
BstX2I RGATCY 3 cut(s) 1303, 1345, 1990
BstYI RGATCY 3 cut(s) 1303, 1345, 1990
Bsu15I ATCGAT 1 cut(s) 748
BsuI GTATCC 1 cut(s) 1855
BsuRI GGCC 4 cut(s) 171, 272, 1653, 2401
BsuTUI ATCGAT 1 cut(s) 748
BtgI CCRYGG 3 cut(s) 704, 2139, 2406
BtsCI GGATG 4 cut(s) 496, 1135, 1822, 2023
CciI TCATGA 2 cut(s) 1177, 1960
CfoI GCGC 3 cut(s) 107, 145, 622
Cfr13I GGNCC 5 cut(s) 701, 950, 1296, 1652, 2447
ClaI ATCGAT 1 cut(s) 748
CseI GACGC 1 cut(s) 637
Csp6I GTAC 4 cut(s) 731, 1010, 2345, 2378
CviQI GTAC 4 cut(s) 731, 1010, 2345, 2378
DdeI CTNAG 5 cut(s) 474, 918, 1717, 2130, 2511
DinI GGCGCC 1 cut(s) 621
DraI TTTAAA 2 cut(s) 39, 1498
EaeI YGGCCR 2 cut(s) 169, 270
Eam1104I CTCTTC 3 cut(s) 1478, 1728, 1880
EarI CTCTTC 3 cut(s) 1478, 1728, 1880
Eco130I CCWWGG 3 cut(s) 704, 2139, 2406
Eco31I GGTCTC 1 cut(s) 1538
Eco47I GGWCC 4 cut(s) 701, 950, 1296, 2447
Eco57I CTGAAG 2 cut(s) 178, 362
Eco72I CACGTG 1 cut(s) 2114
EcoRII CCWGG 3 cut(s) 166, 499, 595
EcoT14I CCWWGG 3 cut(s) 704, 2139, 2406
EcoT22I ATGCAT 3 cut(s) 1267, 2269, 2357
EgeI GGCGCC 1 cut(s) 621
EheI GGCGCC 1 cut(s) 621
ErhI CCWWGG 3 cut(s) 704, 2139, 2406
FalI AAGNNNNNCTT 4 cut(s) 542, 574, 704, 736
FbaI TGATCA 2 cut(s) 460, 493
FblI GTMKAC 2 cut(s) 377, 2172
Fnu4HI GCNGC 7 cut(s) 294, 328, 423, 426, 1443, 1804, 2209
FokI GGATG 4 cut(s) 483, 1142, 1829, 2030
Fsp4HI GCNGC 7 cut(s) 294, 328, 423, 426, 1443, 1804, 2209
GlaI GCGC 3 cut(s) 106, 144, 621
GluI GCNGC 7 cut(s) 294, 328, 423, 426, 1443, 1804, 2209
GsuI CTGGAG 2 cut(s) 712, 834
HaeII RGCGCY 1 cut(s) 623
HaeIII GGCC 4 cut(s) 171, 272, 1653, 2401
HgaI GACGC 1 cut(s) 637
HhaI GCGC 3 cut(s) 107, 145, 622
Hin1I GRCGYC 2 cut(s) 620, 629
Hin6I GCGC 3 cut(s) 105, 143, 620
HinP1I GCGC 3 cut(s) 105, 143, 620
HindIII AAGCTT 4 cut(s) 344, 718, 969, 1855
HinfI GANTC 8 cut(s) 337, 603, 671, 922, 1172, 1964, 2029, 2324
HphI GGTGA 5 cut(s) 515, 585, 1165, 1391, 1918
Hpy166II GTNNAC 7 cut(s) 378, 701, 731, 950, 2173, 2378, 2450
Hpy8I GTNNAC 7 cut(s) 378, 701, 731, 950, 2173, 2378, 2450
Hpy99I CGWCG 1 cut(s) 1220
HpyAV CCTTC 8 cut(s) 138, 848, 1376, 1678, 1969, 2063, 2279, 2552
HpyCH4III ACNGT 4 cut(s) 322, 511, 1233, 1247
HpyCH4IV ACGT 2 cut(s) 1211, 2113
HpyCH4V TGCA 8 cut(s) 293, 425, 966, 977, 1224, 1265, 2267, 2355
HpyF10VI GCNNNNNNNGC 5 cut(s) 628, 793, 1199, 1365, 2417
HpyF3I CTNAG 5 cut(s) 474, 918, 1717, 2130, 2511
HpySE526I ACGT 2 cut(s) 1211, 2113
Hsp92I GRCGYC 2 cut(s) 620, 629
HspAI GCGC 3 cut(s) 105, 143, 620
KasI GGCGCC 1 cut(s) 619
Ksp22I TGATCA 2 cut(s) 460, 493
LmnI GCTCC 5 cut(s) 50, 470, 941, 1032, 1373
Lsp1109I GCAGC 7 cut(s) 305, 339, 409, 437, 1454, 1790, 2220
LweI GCATC 3 cut(s) 986, 1340, 1740
MaeII ACGT 2 cut(s) 1211, 2113
MaeIII GTNAC 8 cut(s) 385, 503, 533, 633, 929, 1186, 1824, 1906
MflI RGATCY 3 cut(s) 1303, 1345, 1990
MhlI GDGCHC 1 cut(s) 794
MlsI TGGCCA 2 cut(s) 171, 272
MluCI AATT 6 cut(s) 1073, 1226, 1599, 1612, 2037, 2521
MluNI TGGCCA 2 cut(s) 171, 272
Mly113I GGCGCC 1 cut(s) 620
MmeI TCCRAC 4 cut(s) 1239, 1318, 2175, 2277
Mox20I TGGCCA 2 cut(s) 171, 272
Mph1103I ATGCAT 3 cut(s) 1267, 2269, 2357
MscI TGGCCA 2 cut(s) 171, 272
MseI TTAA 8 cut(s) 38, 782, 1400, 1497, 1515, 1809, 1917, 2429
MslI CAYNNNNRTG 2 cut(s) 501, 2549
Msp20I TGGCCA 2 cut(s) 171, 272
MspR9I CCNGG 3 cut(s) 168, 501, 597
MvaI CCWGG 3 cut(s) 168, 501, 597
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 5 cut(s) 628, 793, 1199, 1365, 2417
NarI GGCGCC 1 cut(s) 620
NcoI CCATGG 3 cut(s) 704, 2139, 2406
NheI GCTAGC 1 cut(s) 2540
NlaIV GGNNCC 3 cut(s) 46, 621, 1235
NmeAIII GCCGAG 1 cut(s) 287
NmuCI GTSAC 4 cut(s) 503, 633, 929, 1906
NsiI ATGCAT 3 cut(s) 1267, 2269, 2357
NspI RCATGY 1 cut(s) 2125
NspV TTCGAA 1 cut(s) 878
PagI TCATGA 2 cut(s) 1177, 1960
PciI ACATGT 1 cut(s) 2121
PfeI GAWTC 8 cut(s) 337, 603, 671, 922, 1172, 1964, 2029, 2324
PflFI GACNNNGTC 2 cut(s) 509, 631
PkrI GCNGC 7 cut(s) 295, 329, 424, 427, 1444, 1805, 2210
PluTI GGCGCC 1 cut(s) 623
PmaCI CACGTG 1 cut(s) 2114
PmlI CACGTG 1 cut(s) 2114
Ppu21I YACGTR 1 cut(s) 2114
PscI ACATGT 1 cut(s) 2121
PsiI TTATAA 1 cut(s) 1662
Psp6I CCWGG 3 cut(s) 166, 499, 595
PspCI CACGTG 1 cut(s) 2114
PspGI CCWGG 3 cut(s) 166, 499, 595
PspN4I GGNNCC 3 cut(s) 46, 621, 1235
PspPI GGNCC 5 cut(s) 701, 950, 1296, 1652, 2447
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 3 cut(s) 1303, 1345, 1990
PsyI GACNNNGTC 2 cut(s) 509, 631
RsaI GTAC 4 cut(s) 732, 1011, 2346, 2379
RsaNI GTAC 4 cut(s) 731, 1010, 2345, 2378
RseI CAYNNNNRTG 2 cut(s) 501, 2549
SaqAI TTAA 8 cut(s) 38, 782, 1400, 1497, 1515, 1809, 1917, 2429
SatI GCNGC 7 cut(s) 294, 328, 423, 426, 1443, 1804, 2209
Sau96I GGNCC 5 cut(s) 701, 950, 1296, 1652, 2447
ScaI AGTACT 1 cut(s) 2346
ScrFI CCNGG 3 cut(s) 168, 501, 597
SduI GDGCHC 1 cut(s) 794
SfaNI GCATC 3 cut(s) 986, 1340, 1740
SfcI CTRYAG 3 cut(s) 297, 423, 2173
SfoI GGCGCC 1 cut(s) 621
SfuI TTCGAA 1 cut(s) 878
SinI GGWCC 4 cut(s) 701, 950, 1296, 2447
SmiMI CAYNNNNRTG 2 cut(s) 501, 2549
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 6 cut(s) 1073, 1226, 1599, 1612, 2037, 2521
SsiI CCGC 1 cut(s) 251
SspDI GGCGCC 1 cut(s) 619
SspI AATATT 2 cut(s) 1921, 2316
StyD4I CCNGG 3 cut(s) 166, 499, 595
StyI CCWWGG 3 cut(s) 704, 2139, 2406
TaaI ACNGT 4 cut(s) 322, 511, 1233, 1247
TaiI ACGT 2 cut(s) 1214, 2116
TaqI TCGA 4 cut(s) 748, 878, 1502, 1875
TasI AATT 6 cut(s) 1073, 1226, 1599, 1612, 2037, 2521
TatI WGTACW 2 cut(s) 2344, 2377
TfiI GAWTC 8 cut(s) 337, 603, 671, 922, 1172, 1964, 2029, 2324
Tru1I TTAA 8 cut(s) 38, 782, 1400, 1497, 1515, 1809, 1917, 2429
Tru9I TTAA 8 cut(s) 38, 782, 1400, 1497, 1515, 1809, 1917, 2429
TseFI GTSAC 4 cut(s) 503, 633, 929, 1906
TseI GCWGC 7 cut(s) 293, 327, 422, 425, 1442, 1803, 2208
Tsp45I GTSAC 4 cut(s) 503, 633, 929, 1906
TspDTI ATGAA 9 cut(s) 405, 634, 712, 1831, 1946, 2042, 2298, 2325, 2550
Tth111I GACNNNGTC 2 cut(s) 509, 631
VpaK11BI GGWCC 4 cut(s) 701, 950, 1296, 2447
XapI RAATTY 2 cut(s) 2037, 2521
XbaI TCTAGA 1 cut(s) 2083
XceI RCATGY 1 cut(s) 2125
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmiI GTMKAC 2 cut(s) 377, 2172
ZrmI AGTACT 1 cut(s) 2346
Zsp2I ATGCAT 3 cut(s) 1267, 2269, 2357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.