RchiOBHm_Chr5g0060771

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000079
Physical Location & Seq
Forward (+)
65936270 .. 65938232
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33720

Sequence Viewer

Length: 1806 bp
ATGGTTGAACCATTTTCTTTTACAGGGCCGCCGTCGATCATATGGATTGCGCGTTATGACCCTACGCTTCCCAGACCATGGAAGGGTTTGATTGATCCTTCCACAGGTTGGCTATATTTCTGGAACCCTGAAACCAACGTTACCCAATATGAAAGACCATCCGCCCCTCTATATCATCATCAATTTCAGCTGCAGCAATATCCATATCCATGGCTTCCTCGTTACGACCGGCCACAACTCCAGTACTCTCACCGGTACCCAGAACCTCTCTCTGCATCTCATGCCCCCATATGCGCCTCACCATCTATTCCGATTGCGGTTCGGGCTCCACACCCGGTTACCGTTCCGATCAAATACCCACGATATAGATCCCTGATTCGTGAGAAAGGTGAAGATAGGGATAGGATTAGTGAGTTACCGGATGACCTTATTTGTCACATACTTTCTTTTCTTCCAACAATAACTGCCGTAAGGACAACTGTTTTGTCTAAAAGATGGAACAAGTTGTGGACTTTTGTTCGCCATCTAGACTTCGACTTATATAGAGATCGGCCCGATGGGAAAAAGTACCGTTTTGAGAGATTTGTTGAATTTGTATTTCTCTGTCTTGTTTCACTGGACATTGGAAAATTTCGTCTTAGATATGCCTCTTCCAGCTGGGAAGATGATTTTTCTCATGTTGATGATTGGGTTTCTGTTGCCGTCTGGCGCAATGTTGTTGAACTTAGAATTTTTGATGTTGCTAGTGGGTATCTTTGTCGCCTACCTAAAAGTATTTTCTGGTGCAAAACCCTCAAGGTTTTGAAACTGTGGGTAGAAGCTATAGCTATTCCTGATCCTCCTACAAAGGGGTGTTTCCCAAGTCTCAAAGTCTTGCATGTCACAGTTATAGATCCTGATGATAAACTGGGAAAACTTCTTTCTTACTTCCCTGTGGTCGAAGATTTGAGCATACACGTACAGATGAGGTACTCTTACAATTTCTATCGCACTTTCAATCTCAAAGTCTCTACCCCAGAACTGAAGACGTTGAAATTAAGTATGGAACGGGAGGAAAGGAGAGACTACGAAATGGGACTTGATTATGGTGGAACCCTAAATCAGTACCATTTTTGTGTCGATGCCCCAAAGCTTGAAAACCTTGATCTTGTACAGATTCCTTTGTCAAATTATATTTTAGAGAACCCAAAATCCGTAGTCAATGCCAGTATTGCTTTCAAATCCCTTGCTGAAGAAGAATGGTCTTCCTTTCCAGACCGTGCATTTCAGCTTCTTACTGGAATATCTAATGTTAAATGCCTCTCTCTTTCGGATCATCCTTTCGAGGCTTCAAATCTCCCTGTTTTTGGTAATTTGAAACAATTGAAGCTGGTTCTTCGTAATTGTAGTAGCTGGGAATTTCTAGCAGCTCTGCTCCACAGAACACCCAATCTGGAAGATCTAGATCTTGTCTTGGAAGATGAAAGTTGTACGTGTACCACATATTGTGGATTCTTATTTCAGGAACTCTTATTTTATGCTCAGAGAACCGGAGGCGAGAAAGAATATCCAGAACTCCAATGGACTCCACCGGAGTTTGTGCCTAACTGTTTGTCATCACACCTCAAGACTATCTCCATAAGAGGATTCAAGGGTCTACAATTTGAAATGAAAGTAGTAAAATACATGTTATTGAATGGTTGTCATTTGAATAAGATGACAATTTATACAAGTATGTTAGAGATGGAAGAGGAGTACTGCAGAGATCTTTTGAGCTTTCAAAGGGTAATGACTTGTCAAGTGGAATTTAGAGGGATGCAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

601

Amino Acids

70.29

Weight (kDa)

6.58

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WW PF00397 23 - 53 1.6e-07 WW domain
F-box PF00646 136 - 171 1.4e-08 F-box domain
LRR_At5g56370 PF24758 227 - 385 4.6e-08 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 524 - 568 3.5e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccB7I CCANNNNNTGG 2 cut(s) 78, 108
AccI GTMKAC 1 cut(s) 1636
AccII CGCG 1 cut(s) 52
AciI CCGC 3 cut(s) 29, 162, 317
AclI AACGTT 1 cut(s) 138
AclWI GGATC 5 cut(s) 89, 363, 830, 887, 1320
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 5 cut(s) 590, 629, 729, 1397, 1784
AcuI CTGAAG 2 cut(s) 1043, 1251
AfiI CCNNNNNNNGG 6 cut(s) 78, 83, 104, 108, 848, 1346
AflIII ACRYGT 3 cut(s) 955, 1472, 1665
AgeI ACCGGT 1 cut(s) 252
AloI GAACNNNNNNTCC 2 cut(s) 1175, 1207
Alw26I GTCTC 3 cut(s) 869, 1012, 1056
AlwI GGATC 5 cut(s) 89, 363, 830, 887, 1320
AoxI GGCC 3 cut(s) 26, 230, 551
ApeKI GCWGC 3 cut(s) 190, 193, 1406
ApoI RAATTY 5 cut(s) 590, 629, 729, 1397, 1784
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
AsiGI ACCGGT 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 255
AspLEI GCGC 3 cut(s) 52, 296, 711
AspS9I GGNCC 2 cut(s) 26, 552
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 3 cut(s) 242, 291, 401
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 328
BbsI GAAGAC 2 cut(s) 1031, 1236
BbvI GCAGC 3 cut(s) 177, 205, 1418
BccI CCATC 6 cut(s) 166, 310, 489, 531, 551, 1717
BceAI ACGGC 3 cut(s) 16, 452, 686
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 3 cut(s) 869, 1012, 1056
BfaI CTAG 4 cut(s) 527, 744, 1403, 1442
BfmI CTRYAG 3 cut(s) 191, 822, 1738
BglII AGATCT 3 cut(s) 1438, 1444, 1744
BisI GCNGC 4 cut(s) 29, 191, 194, 1407
BlsI GCNGC 4 cut(s) 30, 192, 195, 1408
BmcAI AGTACT 2 cut(s) 245, 1736
Bme1390I CCNGG 1 cut(s) 335
BmgT120I GGNCC 2 cut(s) 26, 552
BmiI GGNNCC 4 cut(s) 125, 257, 327, 1093
BmrFI CCNGG 1 cut(s) 335
BmrI ACTGGG 1 cut(s) 917
BmsI GCATC 3 cut(s) 284, 1111, 1785
BmuI ACTGGG 1 cut(s) 917
BpiI GAAGAC 2 cut(s) 1031, 1236
BpmI CTGGAG 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 779, 1589
BpuMI CCSGG 1 cut(s) 335
BsaAI YACGTR 2 cut(s) 958, 1473
BsaBI GATNNNNATC 2 cut(s) 367, 1443
BsaJI CCNNGG 2 cut(s) 77, 209
BsaWI WCCGGW 4 cut(s) 252, 418, 1529, 1570
Bsc4I CCNNNNNNNGG 6 cut(s) 78, 83, 104, 108, 848, 1346
Bse118I RCCGGY 2 cut(s) 228, 252
Bse1I ACTGG 5 cut(s) 241, 621, 912, 1206, 1282
Bse3DI GCAATG 1 cut(s) 718
Bse8I GATNNNNATC 2 cut(s) 367, 1443
BseDI CCNNGG 2 cut(s) 77, 209
BseGI GGATG 4 cut(s) 158, 427, 1315, 1800
BseJI GATNNNNATC 2 cut(s) 367, 1443
BseLI CCNNNNNNNGG 6 cut(s) 78, 83, 104, 108, 848, 1346
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 1 cut(s) 1535
BseNI ACTGG 5 cut(s) 241, 621, 912, 1206, 1282
BseRI GAGGAG 1 cut(s) 1745
BseXI GCAGC 3 cut(s) 177, 205, 1418
BseYI CCCAGC 2 cut(s) 657, 1392
Bsh1236I CGCG 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 3 cut(s) 28, 232, 553
BshNI GGYRCC 1 cut(s) 255
BshTI ACCGGT 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 229
BsiSI CCGG 6 cut(s) 229, 253, 335, 419, 1530, 1571
BslFI GGGAC 1 cut(s) 1089
BslI CCNNNNNNNGG 6 cut(s) 78, 83, 104, 108, 848, 1346
BsmAI GTCTC 3 cut(s) 869, 1012, 1056
BsmFI GGGAC 1 cut(s) 1089
BsnI GGCC 3 cut(s) 28, 232, 553
Bsp1286I GDGCHC 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 1150
Bsp19I CCATGG 2 cut(s) 77, 209
BspACI CCGC 3 cut(s) 29, 162, 317
BspANI GGCC 3 cut(s) 28, 232, 553
BspCNI CTCAG 1 cut(s) 1534
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 4 cut(s) 125, 257, 327, 1093
BspMAI CTGCAG 2 cut(s) 195, 1742
BspPI GGATC 5 cut(s) 89, 363, 830, 887, 1320
BspT107I GGYRCC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 718
BsrFI RCCGGY 2 cut(s) 228, 252
BsrGI TGTACA 1 cut(s) 1150
BsrI ACTGG 5 cut(s) 241, 621, 912, 1206, 1282
BssAI RCCGGY 2 cut(s) 228, 252
BssECI CCNNGG 2 cut(s) 77, 209
BssT1I CCWWGG 2 cut(s) 77, 209
Bst4CI ACNGT 7 cut(s) 343, 481, 572, 810, 886, 1259, 1589
Bst6I CTCTTC 2 cut(s) 655, 1722
BstAPI GCANNNNNTGC 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 1150
BstBAI YACGTR 2 cut(s) 958, 1473
BstDEI CTNAG 3 cut(s) 638, 725, 1521
BstDSI CCRYGG 2 cut(s) 77, 209
BstEII GGTNACC 1 cut(s) 337
BstENI CCTNNNNNAGG 1 cut(s) 102
BstF5I GGATG 4 cut(s) 158, 427, 1315, 1800
BstFNI CGCG 1 cut(s) 52
BstHHI GCGC 3 cut(s) 52, 296, 711
BstMAI GTCTC 3 cut(s) 869, 1012, 1056
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 3 cut(s) 281, 323, 1211
BstNSI RCATGY 2 cut(s) 881, 1669
BstPI GGTNACC 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 333
BstSFI CTRYAG 3 cut(s) 191, 822, 1738
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 3 cut(s) 177, 205, 1418
BstV2I GAAGAC 2 cut(s) 1031, 1236
BstX2I RGATCY 5 cut(s) 368, 892, 1438, 1444, 1744
BstXI CCANNNNNNTGG 1 cut(s) 210
BstYI RGATCY 5 cut(s) 368, 892, 1438, 1444, 1744
BsuRI GGCC 3 cut(s) 28, 232, 553
BtgI CCRYGG 2 cut(s) 77, 209
BtsCI GGATG 4 cut(s) 158, 427, 1315, 1800
BtsIMutI CAGTG 1 cut(s) 614
CfoI GCGC 3 cut(s) 52, 296, 711
Cfr10I RCCGGY 2 cut(s) 228, 252
Cfr13I GGNCC 2 cut(s) 26, 552
CspAI ACCGGT 1 cut(s) 252
CviAII CATG 6 cut(s) 78, 210, 281, 677, 878, 1666
DdeI CTNAG 3 cut(s) 638, 725, 1521
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 655, 1722
EarI CTCTTC 2 cut(s) 655, 1722
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 77, 209
Eco24I GRGCYC 1 cut(s) 328
Eco57I CTGAAG 2 cut(s) 1043, 1251
Eco91I GGTNACC 1 cut(s) 337
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoO65I GGTNACC 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 77, 209
EcoT38I GRGCYC 1 cut(s) 328
ErhI CCWWGG 2 cut(s) 77, 209
FaeI CATG 6 cut(s) 81, 213, 284, 680, 881, 1669
FaqI GGGAC 1 cut(s) 1089
FatI CATG 6 cut(s) 77, 209, 280, 676, 877, 1665
FauNDI CATATG 2 cut(s) 41, 290
FblI GTMKAC 1 cut(s) 1636
Fnu4HI GCNGC 4 cut(s) 29, 191, 194, 1407
FokI GGATG 3 cut(s) 145, 434, 1302
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 4 cut(s) 29, 191, 194, 1407
FspBI CTAG 4 cut(s) 527, 744, 1403, 1442
GlaI GCGC 3 cut(s) 51, 295, 710
GluI GCNGC 4 cut(s) 29, 191, 194, 1407
GsaI CCCAGC 2 cut(s) 661, 1396
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 3 cut(s) 28, 232, 553
HapII CCGG 6 cut(s) 229, 253, 335, 419, 1530, 1571
HhaI GCGC 3 cut(s) 52, 296, 711
Hin1II CATG 6 cut(s) 81, 213, 284, 680, 881, 1669
Hin6I GCGC 3 cut(s) 50, 294, 709
HinP1I GCGC 3 cut(s) 50, 294, 709
HindIII AAGCTT 1 cut(s) 1130
HinfI GANTC 5 cut(s) 376, 1156, 1491, 1564, 1626
HpaII CCGG 6 cut(s) 229, 253, 335, 419, 1530, 1571
HphI GGTGA 3 cut(s) 242, 291, 401
Hpy166II GTNNAC 3 cut(s) 510, 1476, 1637
Hpy188I TCNGA 4 cut(s) 312, 348, 1312, 1524
Hpy8I GTNNAC 3 cut(s) 510, 1476, 1637
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 76, 108
HpyCH4III ACNGT 7 cut(s) 343, 481, 572, 810, 886, 1259, 1589
HpyCH4IV ACGT 4 cut(s) 138, 957, 1028, 1472
HpyCH4V TGCA 7 cut(s) 193, 275, 786, 877, 1262, 1740, 1798
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 323, 1211
HpyF3I CTNAG 3 cut(s) 638, 725, 1521
HpySE526I ACGT 4 cut(s) 138, 957, 1028, 1472
Hsp92II CATG 6 cut(s) 81, 213, 284, 680, 881, 1669
HspAI GCGC 3 cut(s) 50, 294, 709
KpnI GGTACC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 331, 1419
Lsp1109I GCAGC 3 cut(s) 177, 205, 1418
LweI GCATC 3 cut(s) 284, 1111, 1785
MaeI CTAG 4 cut(s) 527, 744, 1403, 1442
MaeII ACGT 4 cut(s) 138, 957, 1028, 1472
MaeIII GTNAC 6 cut(s) 139, 221, 337, 414, 434, 880
MfeI CAATTG 1 cut(s) 1361
MflI RGATCY 5 cut(s) 368, 892, 1438, 1444, 1744
MhlI GDGCHC 1 cut(s) 328
MlyI GAGTC 1 cut(s) 1558
MmeI TCCRAC 1 cut(s) 479
MseI TTAA 2 cut(s) 1037, 1293
MslI CAYNNNNRTG 3 cut(s) 208, 681, 1113
MspA1I CMGCKG 2 cut(s) 190, 657
MspI CCGG 6 cut(s) 229, 253, 335, 419, 1530, 1571
MspR9I CCNGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 1361
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 3 cut(s) 281, 323, 1211
NciI CCSGG 1 cut(s) 335
NcoI CCATGG 2 cut(s) 77, 209
NdeI CATATG 2 cut(s) 41, 290
NlaIII CATG 6 cut(s) 81, 213, 284, 680, 881, 1669
NlaIV GGNNCC 4 cut(s) 125, 257, 327, 1093
NmuCI GTSAC 2 cut(s) 434, 880
NspI RCATGY 2 cut(s) 881, 1669
PciI ACATGT 1 cut(s) 1665
PfeI GAWTC 4 cut(s) 376, 1156, 1491, 1626
PflMI CCANNNNNTGG 2 cut(s) 78, 108
PinAI ACCGGT 1 cut(s) 252
PkrI GCNGC 4 cut(s) 30, 192, 195, 1408
PleI GAGTC 1 cut(s) 1558
PpsI GAGTC 1 cut(s) 1558
Ppu21I YACGTR 2 cut(s) 958, 1473
PscI ACATGT 1 cut(s) 1665
Psp1406I AACGTT 1 cut(s) 138
PspEI GGTNACC 1 cut(s) 337
PspFI CCCAGC 2 cut(s) 657, 1392
PspN4I GGNNCC 4 cut(s) 125, 257, 327, 1093
PspPI GGNCC 2 cut(s) 26, 552
PstI CTGCAG 2 cut(s) 195, 1742
PsuI RGATCY 5 cut(s) 368, 892, 1438, 1444, 1744
PvuII CAGCTG 2 cut(s) 190, 657
RseI CAYNNNNRTG 3 cut(s) 208, 681, 1113
SaqAI TTAA 2 cut(s) 1037, 1293
SatI GCNGC 4 cut(s) 29, 191, 194, 1407
Sau96I GGNCC 2 cut(s) 26, 552
ScaI AGTACT 2 cut(s) 245, 1736
SchI GAGTC 1 cut(s) 1558
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 3 cut(s) 284, 1111, 1785
SfcI CTRYAG 3 cut(s) 191, 822, 1738
SmiMI CAYNNNNRTG 3 cut(s) 208, 681, 1113
SmlI CTYRAG 2 cut(s) 794, 1604
SmoI CTYRAG 2 cut(s) 794, 1604
SsiI CCGC 3 cut(s) 29, 162, 317
SspMI CTAG 4 cut(s) 527, 744, 1403, 1442
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 2 cut(s) 77, 209
TaaI ACNGT 7 cut(s) 343, 481, 572, 810, 886, 1259, 1589
TaiI ACGT 4 cut(s) 141, 960, 1031, 1475
TaqI TCGA 5 cut(s) 35, 534, 939, 1119, 1323
TatI WGTACW 3 cut(s) 243, 1150, 1734
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 4 cut(s) 376, 1156, 1491, 1626
Tru1I TTAA 2 cut(s) 1037, 1293
Tru9I TTAA 2 cut(s) 1037, 1293
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 2 cut(s) 434, 880
TseI GCWGC 3 cut(s) 190, 193, 1406
Tsp45I GTSAC 2 cut(s) 434, 880
TspDTI ATGAA 3 cut(s) 165, 1476, 1664
TspGWI ACGGA 1 cut(s) 1183
TspRI CASTG 1 cut(s) 621
Van91I CCANNNNNTGG 2 cut(s) 78, 108
XagI CCTNNNNNAGG 1 cut(s) 102
XapI RAATTY 5 cut(s) 590, 629, 729, 1397, 1784
XbaI TCTAGA 2 cut(s) 526, 1441
XceI RCATGY 2 cut(s) 881, 1669
XcmI CCANNNNNNNNNTGG 1 cut(s) 1557
XmiI GTMKAC 1 cut(s) 1636
XspI CTAG 4 cut(s) 527, 744, 1403, 1442
ZrmI AGTACT 2 cut(s) 245, 1736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.