Rroxscaffold_6G00420970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000079
Physical Location & Seq
Forward (+)
42178166 .. 42180025
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420970.1

Sequence Viewer

Length: 966 bp
ATGGGTTTAAACTCAAAGCTTTTTAAAGCATGTATTGAAGATAGGATCAGTGGATTGCCAGATGCAATTCTTTTCCACATTATTTCATTCCTTGAAACAAGAGATGCTGTAAAGACCTGCCTATTATCTCATAGATGGAACAATGTGTGGACTTATGTTCCGAATCTAGAGGTATATGTATCTTCACCGAAATATGACTCAGATGAACATGTGCGTCAAGCCGGGTTTGTTGATCGAGTACTTCTGTTCCGTAACTTGTCAAACATTCATAAATTCAGTCTTGTCTGCCTTGGAATCGAAGATTATTTTGATCGTATTGATGCTTGGGTTTGCACTGCCATTAGGCGTAATGTTGTAGAACTTAATCTTGATCTTTATACCACACCCTCAAATTCCTACGAAGGGTGTCTTAAGTTGCCTACAAGCATTTTCATTTGCAAGACACTGGTAGTTTTGAAGCTGATACTAACAGATCATGTTATTGCTATTCCTCCTAACTCAAGTTGTTTTCCAAGTCTCAAGTACCTTGATGTTCAGGATGACCCTTATGCTACGGATGGAGGGCATGAGTACAAAATTTTTGTTAATGCTAATGCTCCAAAACTTGAAACGTTCAATGTCGAGTACCTTTTGGCAAGCTATTCTTTCAAGAATGTAAAATCGCTAAGCACAGTTGATCTTAAATTCAAAAGTCTGCATGCGGGAGAGAACCTTTACTTTGCTGATCGTATACATAAGCTCTTTGCAGAAATCGTGAATGTCAAATATTTGTCAATTTTAGCTTCAATTGTGGGGGACGCTCATATAGACGATCCTGATGGTGATATAGACGATCCTGATAAATATGATTATGATTCTGACAATTCTGACAATTATGATGAAGATGACTTGCATGACCACATGAAATCAGTTTCACTTCTGCAACTCACTTGTGAGTTTTCTAGCTGTATTAAAACTCCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

321

Amino Acids

36.55

Weight (kDa)

4.96

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 54 5.3e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 730
AciI CCGC 1 cut(s) 701
AclI AACGTT 1 cut(s) 611
AclWI GGATC 3 cut(s) 53, 806, 827
AcsI RAATTY 4 cut(s) 272, 391, 576, 683
AfaI GTAC 4 cut(s) 240, 524, 572, 626
AfiI CCNNNNNNNGG 1 cut(s) 402
AflII CTTAAG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 8 cut(s) 38, 95, 457, 608, 616, 649, 688, 786
AluBI AGCT 6 cut(s) 19, 460, 639, 739, 782, 945
AluI AGCT 6 cut(s) 19, 460, 639, 739, 782, 945
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 3 cut(s) 53, 806, 827
ApoI RAATTY 4 cut(s) 272, 391, 576, 683
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 177, 833
BccI CCATC 3 cut(s) 129, 551, 812
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 521
BfaI CTAG 2 cut(s) 167, 942
BfrI CTTAAG 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 125
BlpI GCTNAGC 1 cut(s) 665
BmcAI AGTACT 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 3 cut(s) 52, 94, 310
Bpu1102I GCTNAGC 1 cut(s) 665
BpuEI CTTGAG 2 cut(s) 484, 503
BpuMI CCSGG 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 544, 562
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 450
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 809
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 521
BsmFI GGGAC 1 cut(s) 809
Bsp143I GATC 9 cut(s) 45, 232, 310, 370, 472, 676, 724, 811, 832
Bsp1720I GCTNAGC 1 cut(s) 665
BspACI CCGC 1 cut(s) 701
BspCNI CTCAG 1 cut(s) 212
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 3 cut(s) 53, 806, 827
BspTI CTTAAG 1 cut(s) 410
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 9 cut(s) 45, 232, 310, 370, 472, 676, 724, 811, 832
BssNAI GTATAC 1 cut(s) 731
BssT1I CCWWGG 1 cut(s) 289
Bst1107I GTATAC 1 cut(s) 731
Bst4CI ACNGT 1 cut(s) 673
BstAFI CTTAAG 1 cut(s) 410
BstC8I GCNNGC 2 cut(s) 637, 699
BstDEI CTNAG 2 cut(s) 199, 665
BstF5I GGATG 2 cut(s) 544, 562
BstKTI GATC 9 cut(s) 48, 235, 313, 373, 475, 679, 727, 814, 835
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 9 cut(s) 45, 232, 310, 370, 472, 676, 724, 811, 832
BstNSI RCATGY 3 cut(s) 33, 212, 701
BstSCI CCNGG 1 cut(s) 221
BstZ17I GTATAC 1 cut(s) 731
BtsCI GGATG 2 cut(s) 544, 562
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 55, 333, 443
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 637, 699
CseI GACGC 2 cut(s) 203, 806
Csp6I GTAC 4 cut(s) 239, 523, 571, 625
CviAII CATG 7 cut(s) 30, 209, 476, 566, 698, 893, 901
CviJI RGCY 7 cut(s) 19, 221, 460, 639, 739, 782, 945
CviKI_1 RGCY 7 cut(s) 19, 221, 460, 639, 739, 782, 945
CviQI GTAC 4 cut(s) 239, 523, 571, 625
DdeI CTNAG 2 cut(s) 199, 665
DpnI GATC 9 cut(s) 47, 234, 312, 372, 474, 678, 726, 813, 834
DpnII GATC 9 cut(s) 45, 232, 310, 370, 472, 676, 724, 811, 832
DraI TTTAAA 2 cut(s) 9, 25
Eco130I CCWWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 7 cut(s) 33, 212, 479, 569, 701, 896, 904
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 628, 660
FaqI GGGAC 1 cut(s) 809
FatI CATG 7 cut(s) 29, 208, 475, 565, 697, 892, 900
FauI CCCGC 1 cut(s) 694
FblI GTMKAC 1 cut(s) 730
FokI GGATG 2 cut(s) 551, 569
FspBI CTAG 2 cut(s) 167, 942
HapII CCGG 1 cut(s) 222
HgaI GACGC 2 cut(s) 203, 806
Hin1II CATG 7 cut(s) 33, 212, 479, 569, 701, 896, 904
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 4 cut(s) 163, 197, 294, 854
HpaII CCGG 1 cut(s) 222
HphI GGTGA 2 cut(s) 177, 833
Hpy166II GTNNAC 2 cut(s) 150, 731
Hpy188I TCNGA 4 cut(s) 162, 202, 859, 868
Hpy188III TCNNGA 7 cut(s) 167, 368, 536, 649, 754, 815, 836
Hpy8I GTNNAC 2 cut(s) 150, 731
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 1 cut(s) 673
HpyCH4IV ACGT 1 cut(s) 611
HpyCH4V TGCA 7 cut(s) 65, 333, 438, 697, 746, 892, 922
HpyF3I CTNAG 2 cut(s) 199, 665
HpySE526I ACGT 1 cut(s) 611
Hsp92II CATG 7 cut(s) 33, 212, 479, 569, 701, 896, 904
Kzo9I GATC 9 cut(s) 45, 232, 310, 370, 472, 676, 724, 811, 832
LmnI GCTCC 1 cut(s) 601
LpnPI CCDG 7 cut(s) 72, 130, 235, 431, 521, 828, 849
LweI GCATC 3 cut(s) 52, 94, 310
MaeI CTAG 2 cut(s) 167, 942
MaeII ACGT 1 cut(s) 611
MaeIII GTNAC 1 cut(s) 251
MalI GATC 9 cut(s) 47, 234, 312, 372, 474, 678, 726, 813, 834
MboI GATC 9 cut(s) 45, 232, 310, 370, 472, 676, 724, 811, 832
MboII GAAGA 4 cut(s) 50, 174, 311, 893
MfeI CAATTG 1 cut(s) 786
MluCI AATT 9 cut(s) 66, 272, 391, 576, 683, 774, 786, 862, 871
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 4 cut(s) 163, 397, 501, 554
MseI TTAA 7 cut(s) 8, 24, 363, 411, 585, 681, 951
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 223
MssI GTTTAAAC 1 cut(s) 9
MunI CAATTG 1 cut(s) 786
NciI CCSGG 1 cut(s) 223
NdeII GATC 9 cut(s) 45, 232, 310, 370, 472, 676, 724, 811, 832
NlaIII CATG 7 cut(s) 33, 212, 479, 569, 701, 896, 904
NspI RCATGY 3 cut(s) 33, 212, 701
PaeI GCATGC 1 cut(s) 701
PciI ACATGT 1 cut(s) 208
PfeI GAWTC 3 cut(s) 163, 294, 854
PleI GAGTC 1 cut(s) 191
PmeI GTTTAAAC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 191
PscI ACATGT 1 cut(s) 208
Psp1406I AACGTT 1 cut(s) 611
RsaI GTAC 4 cut(s) 240, 524, 572, 626
RsaNI GTAC 4 cut(s) 239, 523, 571, 625
SaqAI TTAA 7 cut(s) 8, 24, 363, 411, 585, 681, 951
Sau3AI GATC 9 cut(s) 45, 232, 310, 370, 472, 676, 724, 811, 832
ScaI AGTACT 1 cut(s) 240
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 223
SfaNI GCATC 3 cut(s) 52, 94, 310
SmlI CTYRAG 3 cut(s) 410, 499, 518
SmoI CTYRAG 3 cut(s) 410, 499, 518
SphI GCATGC 1 cut(s) 701
Sse9I AATT 9 cut(s) 66, 272, 391, 576, 683, 774, 786, 862, 871
SsiI CCGC 1 cut(s) 701
SspI AATATT 1 cut(s) 767
SspMI CTAG 2 cut(s) 167, 942
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 673
TaiI ACGT 1 cut(s) 614
TaqI TCGA 3 cut(s) 235, 297, 621
TasI AATT 9 cut(s) 66, 272, 391, 576, 683, 774, 786, 862, 871
TatI WGTACW 2 cut(s) 238, 570
TfiI GAWTC 3 cut(s) 163, 294, 854
Tru1I TTAA 7 cut(s) 8, 24, 363, 411, 585, 681, 951
Tru9I TTAA 7 cut(s) 8, 24, 363, 411, 585, 681, 951
TscAI CASTG 3 cut(s) 55, 340, 450
TspDTI ATGAA 6 cut(s) 75, 219, 257, 421, 894, 917
TspGWI ACGGA 2 cut(s) 239, 569
TspRI CASTG 3 cut(s) 55, 340, 450
Vha464I CTTAAG 1 cut(s) 410
XapI RAATTY 4 cut(s) 272, 391, 576, 683
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 3 cut(s) 33, 212, 701
XmiI GTMKAC 1 cut(s) 730
XspI CTAG 2 cut(s) 167, 942
ZrmI AGTACT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.