Rorug05G0105100

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
9251866 .. 9259376
7511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0105100.1

Sequence Viewer

Length: 672 bp
ATGTCGGAAGATTACCCAAACGCCATTGTTCTGCAGCTCGAGGAGGCTCTGATGGTCCAAGATGAAATTGAAGTCGTCTCTTACATCAAGTTCTACGATCGATTCCTTGACACAGATTTGCTGCAAAAAAGTTGGCCTATAGTGGAGTCGTGTTTGAGCAAGCATGGCGTTTTGTGCACACTGGATCTGGTTGAGGGTACTATGAAGGTTTTTAAAACTAAAGGGGCTGAAGATGAAGACATAATTTTCAAGGCAATTGATATTTTGCAGCTTTTGTCGAGAAGTGTTCCAGCACGTTGGGCAATACGAACGCTGGATTGTAGTTGGCAACATGAGATCATCAAGATTGGGAATCAAGAAGGGGGGATTTGCAACATATTTGGGATCAGTAAGGAGCAATTTCTTGCACGGAGGAATCTTATCGTTGGTGTCATGAAGGGACTTTTTGAACTTACTGGCTGTGGCGTTTTTCTTAAGGGAAATACCATTGCTCTTATTGGTCCACTGCAAGGAATAAAGACGATAACAAAGATTGTGGAAGACTGCATCGCTCACAATGTGCCTCCTGCACCCCGTGTGCGGAGGATTAAAAAGAAGACTCAACTGATGAAGGATGCGAGGATTAAAATGACAAGTGAAGTGATGAAGAGTCTCGAGGCTTTTCATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

223

Amino Acids

25.16

Weight (kDa)

7.59

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 39 - 105 1e-10 Krr1 KH1 domain
KH_KRR1_2nd PF21800 129 - 204 1.7e-12 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 580
AclWI GGATC 2 cut(s) 192, 392
AcuI CTGAAG 1 cut(s) 249
AdeI CACNNNGTG 2 cut(s) 559, 575
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 2 cut(s) 509, 579
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 3 cut(s) 71, 250, 449
AluBI AGCT 2 cut(s) 37, 271
AluI AGCT 2 cut(s) 37, 271
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 82, 656
Alw44I GTGCAC 1 cut(s) 175
AlwI GGATC 2 cut(s) 192, 392
Ama87I CYCGRG 2 cut(s) 38, 653
AoxI GGCC 1 cut(s) 134
ApaLI GTGCAC 1 cut(s) 175
ApeKI GCWGC 3 cut(s) 34, 121, 268
AspS9I GGNCC 2 cut(s) 55, 500
AvaI CYCGRG 2 cut(s) 38, 653
AvaII GGWCC 2 cut(s) 55, 500
BaeGI GKGCMC 1 cut(s) 179
BbsI GAAGAC 3 cut(s) 243, 546, 602
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 46, 108, 280
BccI CCATC 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 82, 656
BfmI CTRYAG 2 cut(s) 32, 138
BfrI CTTAAG 1 cut(s) 473
BisI GCNGC 3 cut(s) 35, 122, 269
BlsI GCNGC 3 cut(s) 36, 123, 270
Bme18I GGWCC 2 cut(s) 55, 500
BmeT110I CYCGRG 2 cut(s) 38, 653
BmgT120I GGNCC 2 cut(s) 55, 500
BmsI GCATC 2 cut(s) 555, 604
BpiI GAAGAC 3 cut(s) 243, 546, 602
Bsa29I ATCGAT 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 579
Bse1I ACTGG 2 cut(s) 186, 460
Bse3DI GCAATG 1 cut(s) 486
BseCI ATCGAT 1 cut(s) 100
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 2 cut(s) 509, 579
BseMI GCAATG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 186, 460
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 3 cut(s) 46, 108, 280
BsgI GTGCAG 1 cut(s) 552
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 2 cut(s) 38, 653
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 2 cut(s) 509, 579
BsmAI GTCTC 2 cut(s) 82, 656
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 1 cut(s) 136
BsoBI CYCGRG 2 cut(s) 38, 653
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 4 cut(s) 97, 184, 336, 384
BspACI CCGC 1 cut(s) 580
BspANI GGCC 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 100
BspHI TCATGA 1 cut(s) 432
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 2 cut(s) 192, 392
BspTI CTTAAG 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 2 cut(s) 186, 460
BssMI GATC 4 cut(s) 97, 184, 336, 384
Bst6I CTCTTC 1 cut(s) 641
BstAFI CTTAAG 1 cut(s) 473
BstC8I GCNNGC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 619
BstKTI GATC 4 cut(s) 100, 187, 339, 387
BstMAI GTCTC 2 cut(s) 82, 656
BstMBI GATC 4 cut(s) 97, 184, 336, 384
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 165, 174, 299
BstSFI CTRYAG 2 cut(s) 32, 138
BstSLI GKGCMC 1 cut(s) 179
BstV1I GCAGC 3 cut(s) 46, 108, 280
BstV2I GAAGAC 3 cut(s) 243, 546, 602
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 100
BsuRI GGCC 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 100
BtgZI GCGATG 1 cut(s) 532
BtsCI GGATG 1 cut(s) 619
BtsI GCAGTG 1 cut(s) 503
BtsIMutI CAGTG 2 cut(s) 179, 503
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 55, 500
ClaI ATCGAT 1 cut(s) 100
Csp6I GTAC 1 cut(s) 198
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviAII CATG 4 cut(s) 164, 332, 433, 665
CviJI RGCY 7 cut(s) 37, 47, 136, 227, 271, 459, 659
CviKI_1 RGCY 7 cut(s) 37, 47, 136, 227, 271, 459, 659
CviQI GTAC 1 cut(s) 198
DpnI GATC 4 cut(s) 99, 186, 338, 386
DpnII GATC 4 cut(s) 97, 184, 336, 384
DraI TTTAAA 1 cut(s) 214
DraIII CACNNNGTG 2 cut(s) 559, 575
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Eco47I GGWCC 2 cut(s) 55, 500
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 2 cut(s) 38, 653
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 4 cut(s) 167, 335, 436, 668
FaiI YATR 8 cut(s) 140, 165, 203, 242, 333, 377, 434, 666
FaqI GGGAC 1 cut(s) 453
FatI CATG 4 cut(s) 163, 331, 432, 664
Fnu4HI GCNGC 3 cut(s) 35, 122, 269
FokI GGATG 1 cut(s) 626
Fsp4HI GCNGC 3 cut(s) 35, 122, 269
GluI GCNGC 3 cut(s) 35, 122, 269
HaeIII GGCC 1 cut(s) 136
Hin1II CATG 4 cut(s) 167, 335, 436, 668
HinfI GANTC 6 cut(s) 102, 146, 352, 415, 598, 649
Hpy166II GTNNAC 2 cut(s) 177, 503
Hpy188I TCNGA 3 cut(s) 7, 51, 671
Hpy188III TCNNGA 5 cut(s) 279, 343, 356, 433, 653
Hpy8I GTNNAC 2 cut(s) 177, 503
HpyAV CCTTC 4 cut(s) 199, 353, 430, 604
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 9 cut(s) 34, 124, 177, 268, 372, 407, 508, 546, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 174, 299
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 4 cut(s) 167, 335, 436, 668
Kzo9I GATC 4 cut(s) 97, 184, 336, 384
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 6 cut(s) 167, 173, 299, 303, 441, 579
Lsp1109I GCAGC 3 cut(s) 46, 108, 280
LweI GCATC 2 cut(s) 555, 604
MaeII ACGT 1 cut(s) 295
MalI GATC 4 cut(s) 99, 186, 338, 386
MboI GATC 4 cut(s) 97, 184, 336, 384
MboII GAAGA 6 cut(s) 20, 242, 248, 551, 607, 658
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 4 cut(s) 66, 243, 255, 398
MlyI GAGTC 3 cut(s) 155, 592, 658
MnlI CCTC 8 cut(s) 34, 37, 187, 405, 573, 576, 612, 649
MseI TTAA 4 cut(s) 213, 474, 588, 624
MspCI CTTAAG 1 cut(s) 473
MunI CAATTG 1 cut(s) 255
MwoI GCNNNNNNNGC 3 cut(s) 165, 174, 299
NdeII GATC 4 cut(s) 97, 184, 336, 384
NlaIII CATG 4 cut(s) 167, 335, 436, 668
PaeR7I CTCGAG 2 cut(s) 38, 653
PagI TCATGA 1 cut(s) 432
PfeI GAWTC 3 cut(s) 102, 352, 415
PkrI GCNGC 3 cut(s) 36, 123, 270
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 3 cut(s) 154, 592, 657
PpsI GAGTC 3 cut(s) 154, 592, 657
PspPI GGNCC 2 cut(s) 55, 500
PspXI VCTCGAGB 1 cut(s) 38
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 1 cut(s) 184
PvuI CGATCG 1 cut(s) 100
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SaqAI TTAA 4 cut(s) 213, 474, 588, 624
SatI GCNGC 3 cut(s) 35, 122, 269
Sau3AI GATC 4 cut(s) 97, 184, 336, 384
Sau96I GGNCC 2 cut(s) 55, 500
SchI GAGTC 3 cut(s) 155, 592, 658
SduI GDGCHC 1 cut(s) 179
SetI ASST 4 cut(s) 39, 210, 273, 298
SfaNI GCATC 2 cut(s) 555, 604
SfcI CTRYAG 2 cut(s) 32, 138
Sfr274I CTCGAG 2 cut(s) 38, 653
SinI GGWCC 2 cut(s) 55, 500
SlaI CTCGAG 2 cut(s) 38, 653
SmlI CTYRAG 3 cut(s) 38, 473, 653
SmoI CTYRAG 3 cut(s) 38, 473, 653
Sse9I AATT 4 cut(s) 66, 243, 255, 398
SsiI CCGC 1 cut(s) 580
TaiI ACGT 1 cut(s) 298
TaqI TCGA 4 cut(s) 39, 100, 278, 654
TasI AATT 4 cut(s) 66, 243, 255, 398
TfiI GAWTC 3 cut(s) 102, 352, 415
Tru1I TTAA 4 cut(s) 213, 474, 588, 624
Tru9I TTAA 4 cut(s) 213, 474, 588, 624
TscAI CASTG 2 cut(s) 186, 510
TseI GCWGC 3 cut(s) 34, 121, 268
TspDTI ATGAA 7 cut(s) 78, 218, 249, 449, 623, 653, 659
TspGWI ACGGA 1 cut(s) 424
TspRI CASTG 2 cut(s) 186, 510
Vha464I CTTAAG 1 cut(s) 473
VneI GTGCAC 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 55, 500
XhoI CTCGAG 2 cut(s) 38, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.