Rmu_sc0001571.1_g000005

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001571.1
OG0000079
Physical Location & Seq
Forward (+)
31233 .. 32177
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001571.1_g000005.1.cds

Sequence Viewer

Length: 945 bp
atgggttctgtatcgaagcatcaagcaatagttaaagataggatcagtgcattaccagatgcagttctgggtcacatactttcgtttcttcgaacgaaatatgctgtaaggaccaccattttgtctaaaagatggaacaaattatggacttatgttccaagtctggacttcaaagacgaacaagatttccatactttccggacagatggctatggctcagaactttttacgaattttgttgatcgtgtacttttatttcgccaatcatcagacatccgaaagttccgtctttcacttcgccactgtgatgctttttctcgtattgatggctggatatgcactgccattaggcgtaatgttgttgaacttgatttttttctttgtgttgatgatgacattacttttgagttgcctcaatgtgttttcatgtgcaaaacactggaggtcttgaagctggcatcaaactgtcttacctgtgcccctcctccatccgggtgtttctcaagtctcaagtttcttcgtgtttcagtttattatcctgtgagtgattgggtggcaaacattttctctcactgccctttacttgagggattgatcatagatggaaatgttggacttgaaagagttttgaatttcaacatatccgcgcgcaatctgaagacattgaaaatagatttgtacattgatggcaatccaggtgatcccgcatacaatcttttcatcgatgccccaaagctcgaaaaccttgatgtcaagctggataagttatcgaactattatataaaggatgcaaaatccctaattaaggctgatattgatcttgaagcctgtggtgcagaacaacagcctgcctttgccaaccgtgtaactgcgcttctgccacttatttcaagtgttaaatatctctctctctcagctcattgtatggaggttagtataagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

314

Amino Acids

35.53

Weight (kDa)

6.97

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 647, 649
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 2 cut(s) 645, 705
AclWI GGATC 2 cut(s) 50, 695
AcsI RAATTY 2 cut(s) 232, 631
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 2 cut(s) 249, 680
AfiI CCNNNNNNNGG 2 cut(s) 491, 805
AgsI TTSAA 9 cut(s) 172, 365, 451, 620, 631, 637, 667, 824, 891
AjnI CCWGG 1 cut(s) 694
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 5 cut(s) 454, 736, 757, 917, 942
AluI AGCT 5 cut(s) 454, 736, 757, 917, 942
Alw26I GTCTC 1 cut(s) 512
AlwI GGATC 2 cut(s) 50, 695
Aor13HI TCCGGA 1 cut(s) 198
ApoI RAATTY 2 cut(s) 232, 631
ArsI GACNNNNNNTTYG 6 cut(s) 103, 135, 271, 303, 386, 418
AspLEI GCGC 3 cut(s) 649, 651, 874
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 1 cut(s) 710
AsuII TTCGAA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 481
BarI GAAGNNNNNNTAC 2 cut(s) 858, 890
BbsI GAAGAC 1 cut(s) 665
BccI CCATC 6 cut(s) 126, 200, 320, 496, 596, 680
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 512
Bme1390I CCNGG 2 cut(s) 493, 696
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 493, 696
BmsI GCATC 6 cut(s) 28, 49, 298, 467, 715, 778
BpiI GAAGAC 1 cut(s) 665
BpmI CTGGAG 1 cut(s) 461
Bpu14I TTCGAA 1 cut(s) 91
BpuEI CTTGAG 3 cut(s) 487, 494, 605
BpuMI CCSGG 1 cut(s) 493
Bsa29I ATCGAT 1 cut(s) 723
BsaBI GATNNNNATC 2 cut(s) 690, 816
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 805
Bse1I ACTGG 1 cut(s) 444
Bse8I GATNNNNATC 2 cut(s) 690, 816
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 1 cut(s) 723
BseGI GGATG 3 cut(s) 273, 488, 793
BseJI GATNNNNATC 2 cut(s) 690, 816
BseLI CCNNNNNNNGG 2 cut(s) 491, 805
BseMII CTCAG 2 cut(s) 231, 927
BseNI ACTGG 1 cut(s) 444
BsePI GCGCGC 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 474
BseSI GKGCMC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 2 cut(s) 647, 649
BshVI ATCGAT 1 cut(s) 723
BsiSI CCGG 2 cut(s) 199, 492
BslI CCNNNNNNNGG 2 cut(s) 491, 805
BsmAI GTCTC 1 cut(s) 512
Bsp119I TTCGAA 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 481
Bsp13I TCCGGA 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 5 cut(s) 42, 241, 594, 700, 817
BspACI CCGC 2 cut(s) 645, 705
BspCNI CTCAG 2 cut(s) 230, 926
BspDI ATCGAT 1 cut(s) 723
BspEI TCCGGA 1 cut(s) 198
BspFNI CGCG 2 cut(s) 647, 649
BspPI GGATC 2 cut(s) 50, 695
BspT104I TTCGAA 1 cut(s) 91
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 1 cut(s) 444
BssHII GCGCGC 1 cut(s) 647
BssMI GATC 5 cut(s) 42, 241, 594, 700, 817
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 3 cut(s) 305, 467, 863
BstAUI TGTACA 1 cut(s) 678
BstBI TTCGAA 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 456, 649, 849
BstDEI CTNAG 2 cut(s) 217, 913
BstENI CCTNNNNNAGG 1 cut(s) 803
BstF5I GGATG 3 cut(s) 273, 488, 793
BstFNI CGCG 2 cut(s) 647, 649
BstHHI GCGC 3 cut(s) 649, 651, 874
BstKTI GATC 5 cut(s) 45, 244, 597, 703, 820
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 5 cut(s) 42, 241, 594, 700, 817
BstMWI GCNNNNNNNGC 2 cut(s) 336, 833
BstNI CCWGG 1 cut(s) 696
BstSCI CCNGG 2 cut(s) 491, 694
BstSLI GKGCMC 1 cut(s) 481
BstUI CGCG 2 cut(s) 647, 649
BstV2I GAAGAC 1 cut(s) 665
Bsu15I ATCGAT 1 cut(s) 723
BsuTUI ATCGAT 1 cut(s) 723
BtsCI GGATG 3 cut(s) 273, 488, 793
BtsI GCAGTG 2 cut(s) 339, 571
BtsIMutI CAGTG 5 cut(s) 52, 301, 339, 437, 571
Cac8I GCNNGC 3 cut(s) 456, 649, 849
CfoI GCGC 3 cut(s) 649, 651, 874
Cfr13I GGNCC 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 723
Csp6I GTAC 2 cut(s) 248, 679
CviAII CATG 1 cut(s) 427
CviQI GTAC 2 cut(s) 248, 679
DdeI CTNAG 2 cut(s) 217, 913
DpnI GATC 5 cut(s) 44, 243, 596, 702, 819
DpnII GATC 5 cut(s) 42, 241, 594, 700, 817
Eco47I GGWCC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 677
EcoNI CCTNNNNNAGG 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 694
FaeI CATG 1 cut(s) 430
FatI CATG 1 cut(s) 426
FauI CCCGC 1 cut(s) 712
FbaI TGATCA 1 cut(s) 594
FokI GGATG 3 cut(s) 260, 475, 800
GlaI GCGC 3 cut(s) 648, 650, 873
GsuI CTGGAG 1 cut(s) 461
HapII CCGG 2 cut(s) 199, 492
HhaI GCGC 3 cut(s) 649, 651, 874
Hin1II CATG 1 cut(s) 430
Hin6I GCGC 3 cut(s) 647, 649, 872
HinP1I GCGC 3 cut(s) 647, 649, 872
HpaII CCGG 2 cut(s) 199, 492
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 4 cut(s) 220, 271, 278, 657
Hpy188III TCNNGA 4 cut(s) 164, 199, 448, 821
Hpy8I GTNNAC 1 cut(s) 248
HpyCH4III ACNGT 3 cut(s) 305, 467, 863
HpyCH4V TGCA 6 cut(s) 50, 62, 339, 432, 791, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 833
HpyF3I CTNAG 2 cut(s) 217, 913
Hsp92II CATG 1 cut(s) 430
HspAI GCGC 3 cut(s) 647, 649, 872
Kpn2I TCCGGA 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 5 cut(s) 42, 241, 594, 700, 817
LweI GCATC 6 cut(s) 28, 49, 298, 467, 715, 778
MaeIII GTNAC 2 cut(s) 71, 865
MalI GATC 5 cut(s) 44, 243, 596, 702, 819
MboI GATC 5 cut(s) 42, 241, 594, 700, 817
MboII GAAGA 3 cut(s) 80, 509, 670
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 4 cut(s) 140, 232, 631, 801
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 6 cut(s) 423, 436, 492, 495, 580, 922
MroI TCCGGA 1 cut(s) 198
MseI TTAA 3 cut(s) 33, 804, 897
MslI CAYNNNNRTG 2 cut(s) 306, 493
MspI CCGG 2 cut(s) 199, 492
MspR9I CCNGG 2 cut(s) 493, 696
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 2 cut(s) 647, 649
MwoI GCNNNNNNNGC 2 cut(s) 336, 833
NciI CCSGG 1 cut(s) 493
NdeII GATC 5 cut(s) 42, 241, 594, 700, 817
NlaIII CATG 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 71
NspV TTCGAA 1 cut(s) 91
PauI GCGCGC 1 cut(s) 647
Psp6I CCWGG 1 cut(s) 694
PspGI CCWGG 1 cut(s) 694
PspPI GGNCC 1 cut(s) 111
PteI GCGCGC 1 cut(s) 647
RsaI GTAC 2 cut(s) 249, 680
RsaNI GTAC 2 cut(s) 248, 679
RseI CAYNNNNRTG 2 cut(s) 306, 493
SaqAI TTAA 3 cut(s) 33, 804, 897
Sau3AI GATC 5 cut(s) 42, 241, 594, 700, 817
Sau96I GGNCC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 493, 696
SduI GDGCHC 1 cut(s) 481
SfaNI GCATC 6 cut(s) 28, 49, 298, 467, 715, 778
SfuI TTCGAA 1 cut(s) 91
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 2 cut(s) 306, 493
SmlI CTYRAG 3 cut(s) 502, 509, 584
SmoI CTYRAG 3 cut(s) 502, 509, 584
Sse9I AATT 4 cut(s) 140, 232, 631, 801
SsiI CCGC 2 cut(s) 645, 705
StyD4I CCNGG 2 cut(s) 491, 694
TaaI ACNGT 3 cut(s) 305, 467, 863
TaqI TCGA 5 cut(s) 14, 91, 723, 738, 770
TasI AATT 4 cut(s) 140, 232, 631, 801
TatI WGTACW 2 cut(s) 247, 678
Tru1I TTAA 3 cut(s) 33, 804, 897
Tru9I TTAA 3 cut(s) 33, 804, 897
TscAI CASTG 5 cut(s) 52, 308, 346, 444, 578
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 415, 709
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 5 cut(s) 52, 308, 346, 444, 578
VpaK11BI GGWCC 1 cut(s) 111
XagI CCTNNNNNAGG 1 cut(s) 803
XapI RAATTY 2 cut(s) 232, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.