MD11G1275400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000079
Physical Location & Seq
Reverse (-)
39259571 .. 39262053
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1275400.v1.1.491

Sequence Viewer

Length: 1215 bp
ATGAACTTTATTAATCGTACACTTTCCTTTCATGGCTCATCGGACATCCAAAAATTTCTTCTTTGTTGTAGGCGTGAACAGGATTTCAGTGCTAAGGATTTCTCTCATATTGGTAGATGGATTAGAACTGCCGTTAGGCGTAATGTTGTTGAATTGGATCTTCATCTTACCCTTGACAGTAACACGCCTACTCGAGAATTCAAAATCCCTCAAAGTCTTCTCAGGTCTAAAACCCTAGTGGTTTTGACTGTGTATTCAAATTGTATTACCTATGCTCCTACAAAAGGGTGTTTCCCGAGTCTAAAGGTCCTTTCTATGTCAGTTGTCTGGCCAGACACGGATTCCTTTACTTCCCTGGGAAATTTTCTTTCTTGTTGTCCTATACTTGAAGAATTGAGTATAGATCTGAGTTTAAGATTTCGTGATGTCTTGAATTTCTATATATCTGCACCTTTATTGATGACGTTAAGAATTTCTCTGGACCATCCGAGTTCTCGTCATTGGACCAAGTACTTGATTAATGCCCCAATGCTGGAAAATCTTTATCTCAGTGACAATGTTTTGTCAAGTTACTTTTTGGAGAGTTCAGTGTCTCTTGTCAGAGCTGAAATTGATTTCAAAGACAGATTTTCATATGACAATGCTAGCTATTCAGATGAAGATGAATTTTGGGGCCTTCCAGATAAACGTCTTGGATTTTCTAACAGGGCAACTCCATCCCTGGAAAAATTTTCAGATGTAAAATATCTTTCTCTGTCTGGCGTGCCTTCACTGTTGAAGGTGCATGATCTTCCTGCTTTTAATAATGTGAGGCAATTGGAACTTACTCTTTATGATGGCGACTACTGCGAGTTGTTAATCGAGTTGCTCAAGAGATCACCTAAACTGGAATATCTTGCATTAGGAGATCAGTATTTCAGCTGTAGAGAACTATTCTCAGAGCACTCACAAGATCGATGGAATCCGCCAGAGCTTGTGCCTGATTGTTTGTTGTCACACCTCAAGACTATCTCCTTGAGAGGATTTCAGGGAAGCCAGGACGAGATGGAAGTAGCAAAGTATTTGTTAAAGAACGGCGAAGTTTTGAAGAAGCTTACTATTTATCCCTGGATGCATATTCCTAGAGATCAGTGGTATGAACAAGAGAAGCTGGTATACAAGGAACTTTGTGCGTTTAAATGGGGTTCGAAGATTTGTCGAGTTGAATTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

405

Amino Acids

46.96

Weight (kDa)

6.18

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 9 - 135 1.1e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 38 - 202 6e-12 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 323 - 367 5e-18 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1155
AciI CCGC 1 cut(s) 965
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 329
AcsI RAATTY 8 cut(s) 53, 197, 361, 433, 471, 665, 728, 1205
AfaI GTAC 2 cut(s) 19, 512
AfiI CCNNNNNNNGG 2 cut(s) 284, 532
AgsI TTSAA 9 cut(s) 152, 202, 258, 389, 433, 619, 778, 1087, 1205
AjnI CCWGG 4 cut(s) 354, 720, 1035, 1106
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 6 cut(s) 605, 648, 921, 973, 1093, 1150
AluI AGCT 6 cut(s) 605, 648, 921, 973, 1093, 1150
Alw21I GWGCWC 1 cut(s) 945
Alw26I GTCTC 1 cut(s) 597
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 2 cut(s) 192, 295
AoxI GGCC 2 cut(s) 329, 673
ApoI RAATTY 8 cut(s) 53, 197, 361, 433, 471, 665, 728, 1205
AseI ATTAAT 2 cut(s) 12, 519
AspS9I GGNCC 4 cut(s) 307, 481, 504, 673
AsuHPI GGTGA 1 cut(s) 870
AsuII TTCGAA 1 cut(s) 1187
AsuNHI GCTAGC 1 cut(s) 644
AvaI CYCGRG 2 cut(s) 192, 295
AvaII GGWCC 3 cut(s) 307, 481, 504
BalI TGGCCA 1 cut(s) 331
BarI GAAGNNNNNNTAC 2 cut(s) 1139, 1171
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 945
BccI CCATC 6 cut(s) 111, 492, 724, 830, 951, 1039
BceAI ACGGC 2 cut(s) 116, 1090
BciT130I CCWGG 4 cut(s) 356, 722, 1037, 1108
BcoDI GTCTC 1 cut(s) 597
BfaI CTAG 4 cut(s) 236, 645, 1122, 1213
BfmI CTRYAG 1 cut(s) 922
BglII AGATCT 1 cut(s) 403
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 4 cut(s) 356, 722, 1037, 1108
Bme18I GGWCC 3 cut(s) 307, 481, 504
BmeT110I CYCGRG 2 cut(s) 192, 295
BmgT120I GGNCC 4 cut(s) 307, 481, 504, 673
BmiI GGNNCC 1 cut(s) 674
BmrFI CCNGG 4 cut(s) 356, 722, 1037, 1108
BmsI GCATC 1 cut(s) 1101
BmtI GCTAGC 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 209
Bpu10I CCTNAGC 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 1187
BpuEI CTTGAG 3 cut(s) 854, 986, 1036
Bsa29I ATCGAT 1 cut(s) 955
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 4 cut(s) 354, 355, 720, 1106
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 532
Bse1I ACTGG 1 cut(s) 891
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 4 cut(s) 356, 722, 1037, 1108
BseCI ATCGAT 1 cut(s) 955
BseDI CCNNGG 4 cut(s) 354, 355, 720, 1106
BseGI GGATG 4 cut(s) 45, 484, 716, 1116
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 284, 532
BseMII CTCAG 4 cut(s) 235, 398, 562, 951
BseNI ACTGG 1 cut(s) 891
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 2 cut(s) 331, 675
BshVI ATCGAT 1 cut(s) 955
BsiHKAI GWGCWC 1 cut(s) 945
BsiHKCI CYCGRG 2 cut(s) 192, 295
BslI CCNNNNNNNGG 2 cut(s) 284, 532
BsmAI GTCTC 1 cut(s) 597
BsnI GGCC 2 cut(s) 331, 675
BsoBI CYCGRG 2 cut(s) 192, 295
Bsp119I TTCGAA 1 cut(s) 1187
Bsp1286I GDGCHC 1 cut(s) 945
Bsp143I GATC 7 cut(s) 157, 403, 787, 875, 907, 952, 1126
BspACI CCGC 1 cut(s) 965
BspANI GGCC 2 cut(s) 331, 675
BspCNI CTCAG 4 cut(s) 234, 399, 561, 950
BspDI ATCGAT 1 cut(s) 955
BspLI GGNNCC 1 cut(s) 674
BspOI GCTAGC 1 cut(s) 648
BspPI GGATC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 1187
BsrI ACTGG 1 cut(s) 891
BssECI CCNNGG 4 cut(s) 354, 355, 720, 1106
BssMI GATC 7 cut(s) 157, 403, 787, 875, 907, 952, 1126
BssNAI GTATAC 1 cut(s) 1156
Bst1107I GTATAC 1 cut(s) 1156
Bst2UI CCWGG 4 cut(s) 356, 722, 1037, 1108
Bst4CI ACNGT 3 cut(s) 179, 250, 774
BstBI TTCGAA 1 cut(s) 1187
BstC8I GCNNGC 2 cut(s) 646, 764
BstDEI CTNAG 5 cut(s) 93, 221, 407, 548, 937
BstENI CCTNNNNNAGG 1 cut(s) 282
BstF5I GGATG 4 cut(s) 45, 484, 716, 1116
BstKTI GATC 7 cut(s) 160, 406, 790, 878, 910, 955, 1129
BstMAI GTCTC 1 cut(s) 597
BstMBI GATC 7 cut(s) 157, 403, 787, 875, 907, 952, 1126
BstMWI GCNNNNNNNGC 1 cut(s) 846
BstNI CCWGG 4 cut(s) 356, 722, 1037, 1108
BstSCI CCNGG 4 cut(s) 354, 720, 1035, 1106
BstSFI CTRYAG 1 cut(s) 922
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 2 cut(s) 157, 403
BstYI RGATCY 2 cut(s) 157, 403
BstZ17I GTATAC 1 cut(s) 1156
Bsu15I ATCGAT 1 cut(s) 955
BsuRI GGCC 2 cut(s) 331, 675
BsuTUI ATCGAT 1 cut(s) 955
BtsCI GGATG 4 cut(s) 45, 484, 716, 1116
BtsIMutI CAGTG 5 cut(s) 94, 556, 594, 770, 1136
Cac8I GCNNGC 2 cut(s) 646, 764
Cfr13I GGNCC 4 cut(s) 307, 481, 504, 673
ClaI ATCGAT 1 cut(s) 955
Csp6I GTAC 2 cut(s) 18, 511
CviAII CATG 2 cut(s) 32, 785
CviQI GTAC 2 cut(s) 18, 511
DdeI CTNAG 5 cut(s) 93, 221, 407, 548, 937
DpnI GATC 7 cut(s) 159, 405, 789, 877, 909, 954, 1128
DpnII GATC 7 cut(s) 157, 403, 787, 875, 907, 952, 1126
DraI TTTAAA 1 cut(s) 1177
EaeI YGGCCR 1 cut(s) 329
EciI GGCGGA 1 cut(s) 954
Eco47I GGWCC 3 cut(s) 307, 481, 504
Eco88I CYCGRG 2 cut(s) 192, 295
EcoNI CCTNNNNNAGG 1 cut(s) 282
EcoO109I RGGNCCY 2 cut(s) 307, 673
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 4 cut(s) 354, 720, 1035, 1106
EcoT22I ATGCAT 1 cut(s) 1116
FaeI CATG 2 cut(s) 35, 788
FatI CATG 2 cut(s) 31, 784
FauNDI CATATG 1 cut(s) 634
FblI GTMKAC 1 cut(s) 1155
FokI GGATG 4 cut(s) 32, 471, 703, 1123
FspBI CTAG 4 cut(s) 236, 645, 1122, 1213
HaeIII GGCC 2 cut(s) 331, 675
Hin1II CATG 2 cut(s) 35, 788
HindIII AAGCTT 1 cut(s) 1091
HinfI GANTC 3 cut(s) 298, 341, 961
HphI GGTGA 1 cut(s) 870
Hpy166II GTNNAC 3 cut(s) 20, 77, 1156
Hpy188I TCNGA 7 cut(s) 43, 408, 489, 602, 655, 736, 940
Hpy188III TCNNGA 8 cut(s) 194, 295, 422, 430, 479, 680, 871, 1003
Hpy8I GTNNAC 3 cut(s) 20, 77, 1156
HpyAV CCTTC 3 cut(s) 686, 772, 777
HpyCH4III ACNGT 3 cut(s) 179, 250, 774
HpyCH4IV ACGT 2 cut(s) 464, 688
HpyCH4V TGCA 4 cut(s) 449, 784, 899, 1114
HpyF10VI GCNNNNNNNGC 1 cut(s) 846
HpyF3I CTNAG 5 cut(s) 93, 221, 407, 548, 937
HpySE526I ACGT 2 cut(s) 464, 688
Hsp92II CATG 2 cut(s) 35, 788
Kzo9I GATC 7 cut(s) 157, 403, 787, 875, 907, 952, 1126
LmnI GCTCC 1 cut(s) 280
LweI GCATC 1 cut(s) 1101
MaeI CTAG 4 cut(s) 236, 645, 1122, 1213
MaeII ACGT 2 cut(s) 464, 688
MaeIII GTNAC 4 cut(s) 179, 551, 569, 993
MalI GATC 7 cut(s) 159, 405, 789, 877, 909, 954, 1128
MboI GATC 7 cut(s) 157, 403, 787, 875, 907, 952, 1126
MboII GAAGA 8 cut(s) 50, 152, 209, 401, 671, 782, 1099, 1201
MfeI CAATTG 1 cut(s) 815
MflI RGATCY 2 cut(s) 157, 403
MhlI GDGCHC 1 cut(s) 945
MlsI TGGCCA 1 cut(s) 331
MluNI TGGCCA 1 cut(s) 331
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 4 cut(s) 219, 804, 1010, 1013
Mox20I TGGCCA 1 cut(s) 331
Mph1103I ATGCAT 1 cut(s) 1116
MscI TGGCCA 1 cut(s) 331
MseI TTAA 8 cut(s) 12, 413, 467, 519, 801, 857, 1067, 1176
Msp20I TGGCCA 1 cut(s) 331
MspA1I CMGCKG 1 cut(s) 921
MspR9I CCNGG 4 cut(s) 356, 722, 1037, 1108
MunI CAATTG 1 cut(s) 815
MvaI CCWGG 4 cut(s) 356, 722, 1037, 1108
MwoI GCNNNNNNNGC 1 cut(s) 846
NdeI CATATG 1 cut(s) 634
NdeII GATC 7 cut(s) 157, 403, 787, 875, 907, 952, 1126
NheI GCTAGC 1 cut(s) 644
NlaIII CATG 2 cut(s) 35, 788
NlaIV GGNNCC 1 cut(s) 674
NmuCI GTSAC 2 cut(s) 551, 993
NsiI ATGCAT 1 cut(s) 1116
NspV TTCGAA 1 cut(s) 1187
PaeR7I CTCGAG 1 cut(s) 192
PasI CCCWGGG 1 cut(s) 355
PfeI GAWTC 2 cut(s) 341, 961
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
PpuMI RGGWCCY 1 cut(s) 307
PshBI ATTAAT 2 cut(s) 12, 519
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 4 cut(s) 354, 720, 1035, 1106
PspGI CCWGG 4 cut(s) 354, 720, 1035, 1106
PspN4I GGNNCC 1 cut(s) 674
PspPI GGNCC 4 cut(s) 307, 481, 504, 673
PspPPI RGGWCCY 1 cut(s) 307
PsuI RGATCY 2 cut(s) 157, 403
PvuII CAGCTG 1 cut(s) 921
RsaI GTAC 2 cut(s) 19, 512
RsaNI GTAC 2 cut(s) 18, 511
SaqAI TTAA 8 cut(s) 12, 413, 467, 519, 801, 857, 1067, 1176
Sau3AI GATC 7 cut(s) 157, 403, 787, 875, 907, 952, 1126
Sau96I GGNCC 4 cut(s) 307, 481, 504, 673
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 4 cut(s) 356, 722, 1037, 1108
SduI GDGCHC 1 cut(s) 945
SfaNI GCATC 1 cut(s) 1101
SfcI CTRYAG 1 cut(s) 922
Sfr274I CTCGAG 1 cut(s) 192
SfuI TTCGAA 1 cut(s) 1187
SinI GGWCC 3 cut(s) 307, 481, 504
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 4 cut(s) 192, 869, 1001, 1015
SmoI CTYRAG 4 cut(s) 192, 869, 1001, 1015
SsiI CCGC 1 cut(s) 965
SspMI CTAG 4 cut(s) 236, 645, 1122, 1213
StyD4I CCNGG 4 cut(s) 354, 720, 1035, 1106
TaaI ACNGT 3 cut(s) 179, 250, 774
TaiI ACGT 2 cut(s) 467, 691
TaqI TCGA 5 cut(s) 193, 861, 955, 1187, 1198
TatI WGTACW 1 cut(s) 510
TfiI GAWTC 2 cut(s) 341, 961
Tru1I TTAA 8 cut(s) 12, 413, 467, 519, 801, 857, 1067, 1176
Tru9I TTAA 8 cut(s) 12, 413, 467, 519, 801, 857, 1067, 1176
TscAI CASTG 5 cut(s) 94, 556, 594, 777, 1136
TseFI GTSAC 2 cut(s) 551, 993
Tsp45I GTSAC 2 cut(s) 551, 993
TspDTI ATGAA 7 cut(s) 17, 20, 152, 621, 672, 678, 1152
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 5 cut(s) 94, 556, 594, 777, 1136
VpaK11BI GGWCC 3 cut(s) 307, 481, 504
VspI ATTAAT 2 cut(s) 12, 519
XagI CCTNNNNNAGG 1 cut(s) 282
XapI RAATTY 8 cut(s) 53, 197, 361, 433, 471, 665, 728, 1205
XhoI CTCGAG 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 1155
XspI CTAG 4 cut(s) 236, 645, 1122, 1213
ZrmI AGTACT 1 cut(s) 512
Zsp2I ATGCAT 1 cut(s) 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.