Rw5G018110

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000079
Physical Location & Seq
Reverse (-)
23424656 .. 23426426
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018110.1

Sequence Viewer

Length: 939 bp
ATGGTTTCAATGTCAAAGCCTCAAGCAAGAGTGAGAGATAGGATAAGTGCATTACCAGATGCACTTCTTTCTCACATACTCTCTTTCCTCCCAACACTTTGTGCTGTGAGGACCAGCATTTTGTCTGCAAGATGGAGGAACATGTGGACTACTCTTCCCAATCTAGACTTTGATAACGAAAGAGATTCATTTGGTGTCACGATAGGTCCCTATGGCAAGGATCGTTTCACGACGTTTGTTGATCGTGTATTTCTTTACCGTGATTCATCCGACATTAAAAAGCTTGGTCTTAAAATTCGTTATCCTGTAGATTTTTCTCGTATCGATGATTGGATCTGCACAGCCGTTAGGCGTAATGTTTTGGAAGTTGATCTTCATGTCTTCTCTGATGAAATTGAAGTAGAGGGTTTTCAGTTCCCTCGGAGCCTTTTTATGTGCAAAACTCTGAAGGTTTTGAAATTGTATTCAAATTCATGGACTATTAATCTTGTATATATAATAACTGTTTTCTTTTTTCTTTTGAAGGCTTGGTATCATCCTTTTGATTTTGGTAATGTGAACCAAATGAAGCTGGTACTTCATGATTGCTATTACTGGGAAGTACTAGCAGTGCTGCTCACAAAATCACCTAAACTTGTAGATCTTGCCTTGGAACATAGAATTAAATCTCATGATGAATATTCATTGCCACAATGGAAGCAACCAGAGTCTGTTCCTGCTTGTTTGCTGAGAAATCTCAGCACCATTACCATAAAGGGATTCAGGGGTCATCAGGTTGAGATGGATGTAGCACAGTACATGTTAAAGAATGGTCACGTTTTGAATAACATGAAAATCTATACAGGCCATCTGTGTAAGAAAGAGAAGGAGTTATACAAGAAATTTTTGATGTTTGAAAGGCGTTCAATGACTTGTAAAGTTGAATTTATCAAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

312

Amino Acids

36.75

Weight (kDa)

9.25

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 54 1.3e-06 F-box domain
FBD PF08387 234 - 279 3.5e-13 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 228, 341
AcsI RAATTY 4 cut(s) 294, 469, 881, 923
AcuI CTGAAG 1 cut(s) 467
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 3 cut(s) 576, 603, 797
AflIII ACRYGT 2 cut(s) 141, 798
AgsI TTSAA 9 cut(s) 9, 398, 457, 468, 523, 823, 896, 906, 923
AluBI AGCT 2 cut(s) 283, 571
AluI AGCT 2 cut(s) 283, 571
AlwI GGATC 2 cut(s) 228, 341
AlwNI CAGNNNCTG 1 cut(s) 710
AoxI GGCC 1 cut(s) 844
ApeKI GCWGC 1 cut(s) 613
ApoI RAATTY 4 cut(s) 294, 469, 881, 923
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
AseI ATTAAT 1 cut(s) 483
AspS9I GGNCC 2 cut(s) 111, 206
AsuHPI GGTGA 1 cut(s) 618
AvaII GGWCC 2 cut(s) 111, 206
BarI GAAGNNNNNNTAC 2 cut(s) 857, 889
BbsI GAAGAC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 600
BccI CCATC 3 cut(s) 126, 775, 855
BceAI ACGGC 1 cut(s) 329
BfaI CTAG 2 cut(s) 164, 605
BfmI CTRYAG 1 cut(s) 306
BglII AGATCT 1 cut(s) 640
BisI GCNGC 1 cut(s) 614
BlsI GCNGC 1 cut(s) 615
BmcAI AGTACT 1 cut(s) 603
Bme18I GGWCC 2 cut(s) 111, 206
BmgT120I GGNCC 2 cut(s) 111, 206
BmiI GGNNCC 2 cut(s) 208, 425
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 1 cut(s) 49
BmuI ACTGGG 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 6
Bsa29I ATCGAT 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 419, 648
Bse1I ACTGG 1 cut(s) 599
Bse3DI GCAATG 1 cut(s) 683
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 419, 648
BseGI GGATG 3 cut(s) 266, 535, 790
BseMI GCAATG 1 cut(s) 683
BseMII CTCAG 2 cut(s) 719, 751
BseNI ACTGG 1 cut(s) 599
BseXI GCAGC 1 cut(s) 600
BsgI GTGCAG 1 cut(s) 322
BshFI GGCC 1 cut(s) 846
BshVI ATCGAT 1 cut(s) 324
BslFI GGGAC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 1 cut(s) 846
Bsp143I GATC 5 cut(s) 220, 241, 333, 370, 640
BspANI GGCC 1 cut(s) 846
BspCNI CTCAG 2 cut(s) 720, 750
BspDI ATCGAT 1 cut(s) 324
BspHI TCATGA 2 cut(s) 580, 670
BspLI GGNNCC 2 cut(s) 208, 425
BspPI GGATC 2 cut(s) 228, 341
BsrDI GCAATG 1 cut(s) 683
BsrI ACTGG 1 cut(s) 599
BssECI CCNNGG 2 cut(s) 419, 648
BssMI GATC 5 cut(s) 220, 241, 333, 370, 640
BssT1I CCWWGG 1 cut(s) 648
Bst4CI ACNGT 3 cut(s) 260, 505, 795
Bst6I CTCTTC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 728, 737
BstF5I GGATG 3 cut(s) 266, 535, 790
BstKTI GATC 5 cut(s) 223, 244, 336, 373, 643
BstMBI GATC 5 cut(s) 220, 241, 333, 370, 640
BstNSI RCATGY 2 cut(s) 145, 802
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 600
BstV2I GAAGAC 1 cut(s) 373
BstX2I RGATCY 2 cut(s) 333, 640
BstYI RGATCY 2 cut(s) 333, 640
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 1 cut(s) 846
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 3 cut(s) 266, 535, 790
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 1 cut(s) 615
CaiI CAGNNNCTG 1 cut(s) 710
CciI TCATGA 2 cut(s) 580, 670
Cfr13I GGNCC 2 cut(s) 111, 206
ClaI ATCGAT 1 cut(s) 324
Csp6I GTAC 3 cut(s) 575, 602, 796
CviAII CATG 7 cut(s) 142, 377, 474, 581, 671, 799, 829
CviJI RGCY 7 cut(s) 19, 283, 344, 426, 527, 571, 846
CviKI_1 RGCY 7 cut(s) 19, 283, 344, 426, 527, 571, 846
CviQI GTAC 3 cut(s) 575, 602, 796
DdeI CTNAG 2 cut(s) 728, 737
DpnI GATC 5 cut(s) 222, 243, 335, 372, 642
DpnII GATC 5 cut(s) 220, 241, 333, 370, 640
DraIII CACNNNGTG 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 648
Eco47I GGWCC 2 cut(s) 111, 206
Eco57I CTGAAG 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 7 cut(s) 145, 380, 477, 584, 674, 802, 832
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 1 cut(s) 192
FatI CATG 7 cut(s) 141, 376, 473, 580, 670, 798, 828
Fnu4HI GCNGC 1 cut(s) 614
FokI GGATG 3 cut(s) 253, 522, 797
Fsp4HI GCNGC 1 cut(s) 614
FspBI CTAG 2 cut(s) 164, 605
GluI GCNGC 1 cut(s) 614
HaeIII GGCC 1 cut(s) 846
Hin1II CATG 7 cut(s) 145, 380, 477, 584, 674, 802, 832
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 4 cut(s) 185, 263, 707, 759
HphI GGTGA 1 cut(s) 618
Hpy166II GTNNAC 2 cut(s) 147, 559
Hpy188I TCNGA 4 cut(s) 271, 388, 423, 447
Hpy188III TCNNGA 6 cut(s) 164, 199, 229, 581, 671, 931
Hpy8I GTNNAC 2 cut(s) 147, 559
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 442, 517, 859
HpyCH4III ACNGT 3 cut(s) 260, 505, 795
HpyCH4IV ACGT 2 cut(s) 233, 816
HpyCH4V TGCA 5 cut(s) 50, 62, 128, 339, 438
HpyF3I CTNAG 2 cut(s) 728, 737
HpySE526I ACGT 2 cut(s) 233, 816
Hsp92II CATG 7 cut(s) 145, 380, 477, 584, 674, 802, 832
Kzo9I GATC 5 cut(s) 220, 241, 333, 370, 640
LmnI GCTCC 1 cut(s) 423
Lsp1109I GCAGC 1 cut(s) 600
LweI GCATC 1 cut(s) 49
MaeI CTAG 2 cut(s) 164, 605
MaeII ACGT 2 cut(s) 233, 816
MaeIII GTNAC 2 cut(s) 196, 812
MalI GATC 5 cut(s) 222, 243, 335, 372, 642
MboI GATC 5 cut(s) 220, 241, 333, 370, 640
MboII GAAGA 3 cut(s) 146, 365, 373
MflI RGATCY 2 cut(s) 333, 640
MluCI AATT 7 cut(s) 294, 393, 458, 469, 660, 881, 923
MlyI GAGTC 1 cut(s) 716
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 6 cut(s) 30, 98, 102, 129, 397, 429
MseI TTAA 5 cut(s) 276, 291, 483, 663, 803
NdeII GATC 5 cut(s) 220, 241, 333, 370, 640
NlaIII CATG 7 cut(s) 145, 380, 477, 584, 674, 802, 832
NlaIV GGNNCC 2 cut(s) 208, 425
NmuCI GTSAC 2 cut(s) 196, 812
NspI RCATGY 2 cut(s) 145, 802
PagI TCATGA 2 cut(s) 580, 670
PciI ACATGT 2 cut(s) 141, 798
PfeI GAWTC 3 cut(s) 185, 263, 759
PkrI GCNGC 1 cut(s) 615
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
PpuMI RGGWCCY 1 cut(s) 206
PscI ACATGT 2 cut(s) 141, 798
PshBI ATTAAT 1 cut(s) 483
Psp5II RGGWCCY 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 208, 425
PspPI GGNCC 2 cut(s) 111, 206
PspPPI RGGWCCY 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 2 cut(s) 333, 640
RsaI GTAC 3 cut(s) 576, 603, 797
RsaNI GTAC 3 cut(s) 575, 602, 796
SaqAI TTAA 5 cut(s) 276, 291, 483, 663, 803
SatI GCNGC 1 cut(s) 614
Sau3AI GATC 5 cut(s) 220, 241, 333, 370, 640
Sau96I GGNCC 2 cut(s) 111, 206
ScaI AGTACT 1 cut(s) 603
SchI GAGTC 1 cut(s) 716
SetI ASST 8 cut(s) 208, 236, 285, 453, 573, 631, 777, 819
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 2 cut(s) 111, 206
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 7 cut(s) 294, 393, 458, 469, 660, 881, 923
SspI AATATT 1 cut(s) 680
SspMI CTAG 2 cut(s) 164, 605
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 3 cut(s) 260, 505, 795
TaiI ACGT 2 cut(s) 236, 819
TaqI TCGA 1 cut(s) 324
TasI AATT 7 cut(s) 294, 393, 458, 469, 660, 881, 923
TatI WGTACW 2 cut(s) 601, 795
TfiI GAWTC 3 cut(s) 185, 263, 759
Tru1I TTAA 5 cut(s) 276, 291, 483, 663, 803
Tru9I TTAA 5 cut(s) 276, 291, 483, 663, 803
TscAI CASTG 1 cut(s) 615
TseFI GTSAC 2 cut(s) 196, 812
TseI GCWGC 1 cut(s) 613
Tsp45I GTSAC 2 cut(s) 196, 812
TspRI CASTG 1 cut(s) 615
VpaK11BI GGWCC 2 cut(s) 111, 206
VspI ATTAAT 1 cut(s) 483
XapI RAATTY 4 cut(s) 294, 469, 881, 923
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 2 cut(s) 145, 802
XspI CTAG 2 cut(s) 164, 605
ZrmI AGTACT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.