Rroxscaffold_3G00258130

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000079
Physical Location & Seq
Reverse (-)
52449396 .. 52454218
4823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258130.1

Sequence Viewer

Length: 1044 bp
ATGTGCAAAACGTTGGTTAGTTTGAAGTTGGGTCTGCACAAAAATATTCGTGCCGTTACTCCTCCCTCACATTGTTTCCCCTGTCTCAAGTTGCTACATGTTACATTTTGGTTTCCTGATTCTCATACGGTGGAGAAGCTATTTTCTTTTTTCCCTGTGCTTGAAAATCTTATTATAGATGGAGAACATGAAGATGCGTCAGCTTTCAATCTTGATATATCTGCACCCAAACTGAAAAGACTGCAACTTAGTTTCATTGTCCGTAAATTTGCTATGATAGCTGCTGCAAGTGATTCTGAGGATTATGAAAATTATGGGTGCCAAATTTTTGTTAGTGCTGATGCTCCAAATCTTGAAGAGTTAGATATCTACTATGATGTTCTGGTGAGCTATTCTTTGAAGAATGCCAAATGTCTGAGGAAAGCCGAGATAGGTTTCTTAGATGTGAAAGATCTTGAGAACCTTGATTATTTTCTTGGCCTCGCTGATCGCATATGCCAGCTCTTTGCAGATATTTGTAATACTAAGTACCTGACAGTTTCAGCTCCAATTTTTGCGGCTCTTGACATTAGATATCACAGTCTGCTGCCGACATTTAGTAATTTGCACCACTTGGAGCTACAACTTCAAACTTGTCTCTGTTTGCAATCACTGACAACTTTGCTCAAGATATCACCAAATTTGGAACATCTCAAGATATTACCAAAAAGGGAACACCTGTATGTCAATGAGTACAACTATTGTGATGATGACGATGAGGATGAGCCTGAACATGGATGGGATGCACCAGAGTCTGTGCCTGTTTGTTTGATTTCACACCTCAAGACTATTTGCCTATGGGAATTCAAGGGCTGTCCAAATGAGGTGAAAGTGGCAAAGTACTTGGTGAAGCATGGCAAGGCTTTGAATAAGGTGACTATTTATAATCACTTCAGTGAAGACGAGGAGATGGAGATACGGTCACCTATTGCCTTATGGTCGAAATTTTCAGAGTTTCCCAGGGGTTCCAAGACTTGTAAAATTCAATTTCAGACAATCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

347

Amino Acids

39.8

Weight (kDa)

5.61

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 263 - 307 2.9e-13 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 924
AccB1I GGYRCC 1 cut(s) 318
AciI CCGC 1 cut(s) 557
AclI AACGTT 1 cut(s) 11
AcsI RAATTY 6 cut(s) 266, 324, 679, 842, 983, 1020
AcuI CTGAAG 1 cut(s) 916
AfaI GTAC 3 cut(s) 530, 734, 881
AfiI CCNNNNNNNGG 1 cut(s) 773
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 9 cut(s) 25, 164, 208, 356, 400, 629, 847, 907, 1025
AjnI CCWGG 1 cut(s) 998
AleI CACNNNNGTG 1 cut(s) 933
AluBI AGCT 7 cut(s) 139, 203, 281, 390, 502, 545, 619
AluI AGCT 7 cut(s) 139, 203, 281, 390, 502, 545, 619
Alw26I GTCTC 2 cut(s) 89, 641
AlwNI CAGNNNCTG 1 cut(s) 794
AoxI GGCC 1 cut(s) 478
ApeKI GCWGC 3 cut(s) 281, 284, 586
ApoI RAATTY 6 cut(s) 266, 324, 679, 842, 983, 1020
AsuHPI GGTGA 6 cut(s) 397, 666, 877, 898, 925, 954
BanI GGYRCC 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 945
BbvI GCAGC 3 cut(s) 268, 271, 573
BccI CCATC 3 cut(s) 173, 771, 943
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 1000
BcoDI GTCTC 2 cut(s) 89, 641
BglII AGATCT 1 cut(s) 451
BisI GCNGC 4 cut(s) 282, 285, 558, 587
BlsI GCNGC 4 cut(s) 283, 286, 559, 588
BmcAI AGTACT 1 cut(s) 881
Bme1390I CCNGG 1 cut(s) 1000
BmiI GGNNCC 2 cut(s) 320, 1006
BmrFI CCNGG 1 cut(s) 1000
BmsI GCATC 3 cut(s) 184, 331, 772
BpiI GAAGAC 1 cut(s) 945
BpuEI CTTGAG 5 cut(s) 71, 476, 650, 677, 806
BsaJI CCNNGG 2 cut(s) 998, 999
BsaXI ACNNNNNCTCC 2 cut(s) 944, 974
Bsc4I CCNNNNNNNGG 1 cut(s) 773
BseBI CCWGG 1 cut(s) 1000
BseDI CCNNGG 2 cut(s) 998, 999
BseGI GGATG 3 cut(s) 766, 782, 787
BseLI CCNNNNNNNGG 1 cut(s) 773
BseMII CTCAG 2 cut(s) 288, 407
BseRI GAGGAG 2 cut(s) 51, 959
BseXI GCAGC 3 cut(s) 268, 271, 573
BsgI GTGCAG 2 cut(s) 20, 207
BshFI GGCC 1 cut(s) 480
BshNI GGYRCC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 773
BsmAI GTCTC 2 cut(s) 89, 641
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 1 cut(s) 480
Bsp143I GATC 2 cut(s) 451, 487
BspACI CCGC 1 cut(s) 557
BspANI GGCC 1 cut(s) 480
BspCNI CTCAG 2 cut(s) 289, 408
BspLI GGNNCC 2 cut(s) 320, 1006
BspT107I GGYRCC 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 998, 999
BssMI GATC 2 cut(s) 451, 487
Bst2UI CCWGG 1 cut(s) 1000
Bst4CI ACNGT 4 cut(s) 130, 538, 581, 960
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 5 cut(s) 248, 297, 416, 439, 525
BstEII GGTNACC 1 cut(s) 960
BstF5I GGATG 3 cut(s) 766, 782, 787
BstKTI GATC 2 cut(s) 454, 490
BstMAI GTCTC 2 cut(s) 89, 641
BstMBI GATC 2 cut(s) 451, 487
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 1000
BstNSI RCATGY 1 cut(s) 101
BstPI GGTNACC 1 cut(s) 960
BstSCI CCNGG 1 cut(s) 998
BstV1I GCAGC 3 cut(s) 268, 271, 573
BstV2I GAAGAC 1 cut(s) 945
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 1 cut(s) 480
BtsCI GGATG 3 cut(s) 766, 782, 787
BtsIMutI CAGTG 2 cut(s) 650, 940
Cac8I GCNNGC 1 cut(s) 500
CaiI CAGNNNCTG 1 cut(s) 794
CseI GACGC 1 cut(s) 186
Csp6I GTAC 3 cut(s) 529, 733, 880
CviAII CATG 4 cut(s) 98, 188, 773, 893
CviQI GTAC 3 cut(s) 529, 733, 880
DdeI CTNAG 5 cut(s) 248, 297, 416, 439, 525
DpnI GATC 2 cut(s) 453, 489
DpnII GATC 2 cut(s) 451, 487
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco32I GATATC 3 cut(s) 367, 575, 672
Eco57I CTGAAG 1 cut(s) 916
Eco91I GGTNACC 1 cut(s) 960
EcoO65I GGTNACC 1 cut(s) 960
EcoRI GAATTC 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 998
EcoRV GATATC 3 cut(s) 367, 575, 672
FaeI CATG 4 cut(s) 101, 191, 776, 896
FatI CATG 4 cut(s) 97, 187, 772, 892
FauNDI CATATG 1 cut(s) 494
Fnu4HI GCNGC 4 cut(s) 282, 285, 558, 587
FokI GGATG 3 cut(s) 773, 789, 794
Fsp4HI GCNGC 4 cut(s) 282, 285, 558, 587
GluI GCNGC 4 cut(s) 282, 285, 558, 587
HaeIII GGCC 1 cut(s) 480
HgaI GACGC 1 cut(s) 186
Hin1II CATG 4 cut(s) 101, 191, 776, 896
HinfI GANTC 3 cut(s) 119, 293, 791
HphI GGTGA 6 cut(s) 397, 666, 877, 898, 925, 954
Hpy188I TCNGA 4 cut(s) 298, 417, 991, 1032
Hpy188III TCNNGA 8 cut(s) 116, 212, 353, 455, 563, 667, 694, 823
HpyCH4III ACNGT 4 cut(s) 130, 538, 581, 960
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 9 cut(s) 6, 37, 224, 244, 287, 509, 607, 646, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 5 cut(s) 248, 297, 416, 439, 525
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 4 cut(s) 101, 191, 776, 896
Kzo9I GATC 2 cut(s) 451, 487
LmnI GCTCC 3 cut(s) 349, 550, 616
Lsp1109I GCAGC 3 cut(s) 268, 271, 573
LweI GCATC 3 cut(s) 184, 331, 772
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 4 cut(s) 55, 100, 913, 960
MalI GATC 2 cut(s) 453, 489
MboI GATC 2 cut(s) 451, 487
MboII GAAGA 4 cut(s) 203, 368, 412, 950
MflI RGATCY 1 cut(s) 451
MlyI GAGTC 1 cut(s) 800
MnlI CCTC 9 cut(s) 72, 76, 292, 411, 491, 751, 830, 856, 937
MslI CAYNNNNRTG 3 cut(s) 192, 720, 933
MspR9I CCNGG 1 cut(s) 1000
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 1 cut(s) 1000
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeI CATATG 1 cut(s) 494
NdeII GATC 2 cut(s) 451, 487
NlaIII CATG 4 cut(s) 101, 191, 776, 896
NlaIV GGNNCC 2 cut(s) 320, 1006
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 913, 960
NspI RCATGY 1 cut(s) 101
OliI CACNNNNGTG 1 cut(s) 933
PasI CCCWGGG 1 cut(s) 999
PciI ACATGT 1 cut(s) 97
PctI GAATGC 1 cut(s) 409
PfeI GAWTC 2 cut(s) 119, 293
PkrI GCNGC 4 cut(s) 283, 286, 559, 588
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
PscI ACATGT 1 cut(s) 97
PsiI TTATAA 1 cut(s) 924
Psp1406I AACGTT 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 998
PspEI GGTNACC 1 cut(s) 960
PspGI CCWGG 1 cut(s) 998
PspN4I GGNNCC 2 cut(s) 320, 1006
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 3 cut(s) 530, 734, 881
RsaNI GTAC 3 cut(s) 529, 733, 880
RseI CAYNNNNRTG 3 cut(s) 192, 720, 933
SatI GCNGC 4 cut(s) 282, 285, 558, 587
Sau3AI GATC 2 cut(s) 451, 487
ScaI AGTACT 1 cut(s) 881
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 1 cut(s) 1000
SfaNI GCATC 3 cut(s) 184, 331, 772
SmiMI CAYNNNNRTG 3 cut(s) 192, 720, 933
SmlI CTYRAG 5 cut(s) 86, 455, 665, 692, 821
SmoI CTYRAG 5 cut(s) 86, 455, 665, 692, 821
SsiI CCGC 1 cut(s) 557
SspI AATATT 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 998
TaaI ACNGT 4 cut(s) 130, 538, 581, 960
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 980
TatI WGTACW 2 cut(s) 732, 879
TauI GCSGC 1 cut(s) 560
TfiI GAWTC 2 cut(s) 119, 293
TscAI CASTG 2 cut(s) 657, 940
TseFI GTSAC 2 cut(s) 913, 960
TseI GCWGC 3 cut(s) 281, 284, 586
Tsp45I GTSAC 2 cut(s) 913, 960
TspDTI ATGAA 3 cut(s) 204, 244, 321
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 2 cut(s) 657, 940
XapI RAATTY 6 cut(s) 266, 324, 679, 842, 983, 1020
XceI RCATGY 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.