Rw6G038770

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000079
Physical Location & Seq
Reverse (-)
62884565 .. 62886604
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G038770.1

Sequence Viewer

Length: 1395 bp
ATGCGTGTTCAGACCGGCAAGAAGAAAAGGGTAGAAAAAATGGGTTCGATTGATAGGATCAGTGCATTGCCTGATGAACTAGTTCGTCACATACTTGGCTGCATGCCCACATTAGATTCTGTGAGGACCTCCGTTTTGTCTAAAAGATGGAACAACTTGTGGACCTCGGTTCCCAATCTGGACTTCCACGACCGAAGAGATTTTCCTGCTGATGATGCTGATAATGATGTTCGACTTCGTCGCCCTCGTTGTGATCGTTTTGCAAGGTTTGTCAGCAGTGTGCTCTATTCAAGGGACGCAACAGACGTGGGCAAATTCTCTCTGTCGGTTGGCACACCCCATCATTTACCTGTCATTGAGGATTGGATTTGCGCCGTTGCTAGGCGTAATGTTGTTGAATTACAGCTTGCATTCCATGTGCCTAGTATTTTTTGGATACCACGGTGCATATTAATGTGCAAGACACTGAGGGTTTTGGGGCTGTGCCTGTGGGACTTCGACTTTGCTACTGATCCTCCTACATCAGGCTGTTTCCCGAGTCTGAAGGTCCTCCATGTTAGAGTTTCTAGTGATAATCTATATTTAATGGGGAAGCTGTTTTCTTGCTGCCCTGTGCTTGAAGATCTAACTATTGACGGAAAAGTGAAAAATGGAGACACTGATATAGGTTACAATTTCAATGTTTCTGTGCCTCAAGTGAAGACGCTGAACATAAGTCTTCAAGTGGGGATGGCGAGGCCAAGAAGAGGTCATGAGTATGAACAGTTTGAGACTCGTATCAATGTTTATATCGATGCCCCAAAGCTTGAAAAACTTGATCTCAAAAAGGATGGTTTCACAAATTATGTTCTCATGGGGGGAGCCAAGTCCCTAGTTAATGCCAGTATTGATGTCAGAGATTCTAGAGCAAAAAATCCACCTCACTTTCCCTCTTGTGCAACTGCCCTTCTGGTTGGAATTTCTAATGTGAAATATCTGTCTCTTTTGGCTTCTTGGTCAAAGGATTGGCGTCTCCCTGCTTTTGATAATTTGAAACAACTGAGGTTAGTTCTTGTGGATTGCAATTACTGGGAAGTGCTGCCTGAGTTTCTGCACTGTGCACCTAATCTTGAAGATTTGGTCTTAGAAAATGTAACTGAATGTGAAAGACAGTATCCAAGGTGTGAATGGGGTCTGCCAAAGGATGTGCCTATTTGCTTGTTGTCACACCTGAAGACCATCTCCATAAGTGGATTCAAGGGACAGTGGGCTGAGAGGGAGATAGCCAAGTATCTCTTGAAGAATGGTTCTTTTTTGGATAAGATGTTGATTTACACAGACGGTGTGTATGCGGTACGAGACTTTCACAAGGAGTTTTCAATGTTCCATAGGATGGTTAAGTTCATTCAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

464

Amino Acids

53.16

Weight (kDa)

8.71

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 59 4.1e-10 F-box domain
LRR_At5g56370 PF24758 120 - 215 1.2e-11 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 393 - 437 3.1e-12 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1372
AciI CCGC 1 cut(s) 1331
AclWI GGATC 2 cut(s) 65, 506
AcsI RAATTY 2 cut(s) 314, 957
AcuI CTGAAG 2 cut(s) 563, 1232
AcyI GRCGYC 1 cut(s) 1009
AfaI GTAC 1 cut(s) 1335
AfiI CCNNNNNNNGG 4 cut(s) 381, 524, 746, 1372
AhlI ACTAGT 1 cut(s) 79
AjiI CACGTC 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 3 cut(s) 406, 595, 805
AluI AGCT 3 cut(s) 406, 595, 805
Alw21I GWGCWC 2 cut(s) 285, 1102
Alw26I GTCTC 5 cut(s) 648, 764, 984, 1016, 1332
Alw44I GTGCAC 1 cut(s) 1098
AlwI GGATC 2 cut(s) 65, 506
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 1 cut(s) 737
ApaLI GTGCAC 1 cut(s) 1098
ApeKI GCWGC 3 cut(s) 99, 606, 1078
ApoI RAATTY 2 cut(s) 314, 957
ArsI GACNNNNNNTTYG 4 cut(s) 118, 150, 485, 517
AseI ATTAAT 1 cut(s) 452
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 3 cut(s) 126, 162, 547
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 3 cut(s) 126, 162, 547
BaeGI GKGCMC 1 cut(s) 1102
BaeI ACNNNNGTAYC 2 cut(s) 428, 461
BbsI GAAGAC 3 cut(s) 707, 710, 1220
Bbv12I GWGCWC 2 cut(s) 285, 1102
BbvI GCAGC 3 cut(s) 86, 593, 1065
BccI CCATC 6 cut(s) 141, 348, 724, 824, 1226, 1366
BceAI ACGGC 1 cut(s) 359
BciVI GTATCC 2 cut(s) 429, 1164
BcoDI GTCTC 5 cut(s) 648, 764, 984, 1016, 1332
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 6 cut(s) 80, 381, 423, 567, 872, 903
BfuI GTATCC 2 cut(s) 429, 1164
BglII AGATCT 1 cut(s) 622
BisI GCNGC 3 cut(s) 100, 607, 1079
BlsI GCNGC 3 cut(s) 101, 608, 1080
Bme18I GGWCC 3 cut(s) 126, 162, 547
BmeT110I CYCGRG 1 cut(s) 535
BmgBI CACGTC 1 cut(s) 307
BmgT120I GGNCC 3 cut(s) 126, 162, 547
BmiI GGNNCC 2 cut(s) 171, 862
BmrI ACTGGG 1 cut(s) 1078
BmsI GCATC 2 cut(s) 205, 784
BmuI ACTGGG 1 cut(s) 1078
BpiI GAAGAC 3 cut(s) 707, 710, 1220
BpuEI CTTGAG 1 cut(s) 678
Bsa29I ATCGAT 1 cut(s) 792
BsaHI GRCGYC 1 cut(s) 1009
BsaJI CCNNGG 3 cut(s) 165, 440, 1157
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 4 cut(s) 381, 524, 746, 1372
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 882, 1073
Bse3DI GCAATG 1 cut(s) 65
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 3 cut(s) 165, 440, 1157
BseGI GGATG 4 cut(s) 735, 835, 1189, 1377
BseLI CCNNNNNNNGG 4 cut(s) 381, 524, 746, 1372
BseMI GCAATG 1 cut(s) 65
BseMII CTCAG 4 cut(s) 458, 1031, 1074, 1242
BseNI ACTGG 2 cut(s) 882, 1073
BseSI GKGCMC 1 cut(s) 1102
BseXI GCAGC 3 cut(s) 86, 593, 1065
BsgI GTGCAG 1 cut(s) 1076
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 1 cut(s) 739
BshVI ATCGAT 1 cut(s) 792
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 285, 1102
BsiHKCI CYCGRG 1 cut(s) 535
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 4 cut(s) 308, 506, 853, 1254
BslI CCNNNNNNNGG 4 cut(s) 381, 524, 746, 1372
BsmAI GTCTC 5 cut(s) 648, 764, 984, 1016, 1332
BsmBI CGTCTC 1 cut(s) 1016
BsmFI GGGAC 4 cut(s) 308, 506, 853, 1254
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 1 cut(s) 739
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 285, 1102
Bsp143I GATC 5 cut(s) 57, 253, 511, 622, 817
BspACI CCGC 1 cut(s) 1331
BspANI GGCC 1 cut(s) 739
BspCNI CTCAG 4 cut(s) 459, 1032, 1075, 1243
BspDI ATCGAT 1 cut(s) 792
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 2 cut(s) 171, 862
BspPI GGATC 2 cut(s) 65, 506
BsrDI GCAATG 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 2 cut(s) 882, 1073
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 165, 440, 1157
BssMI GATC 5 cut(s) 57, 253, 511, 622, 817
BssNI GRCGYC 1 cut(s) 1009
BssT1I CCWWGG 1 cut(s) 1157
Bst4CI ACNGT 6 cut(s) 444, 765, 1097, 1152, 1245, 1322
Bst6I CTCTTC 2 cut(s) 190, 739
BstACI GRCGYC 1 cut(s) 1009
BstC8I GCNNGC 2 cut(s) 104, 408
BstDEI CTNAG 5 cut(s) 467, 1040, 1083, 1123, 1251
BstDSI CCRYGG 1 cut(s) 440
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 4 cut(s) 735, 835, 1189, 1377
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 5 cut(s) 60, 256, 514, 625, 820
BstMAI GTCTC 5 cut(s) 648, 764, 984, 1016, 1332
BstMBI GATC 5 cut(s) 57, 253, 511, 622, 817
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 1102
BstV1I GCAGC 3 cut(s) 86, 593, 1065
BstV2I GAAGAC 3 cut(s) 707, 710, 1220
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
Bsu15I ATCGAT 1 cut(s) 792
BsuI GTATCC 2 cut(s) 429, 1164
BsuRI GGCC 1 cut(s) 739
BsuTUI ATCGAT 1 cut(s) 792
BtgI CCRYGG 1 cut(s) 440
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 4 cut(s) 735, 835, 1189, 1377
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 6 cut(s) 67, 283, 464, 657, 1093, 1250
Cac8I GCNNGC 2 cut(s) 104, 408
CciI TCATGA 1 cut(s) 751
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 3 cut(s) 126, 162, 547
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 3 cut(s) 305, 712, 998
Csp6I GTAC 1 cut(s) 1334
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 5 cut(s) 103, 416, 554, 752, 853
CviQI GTAC 1 cut(s) 1334
DdeI CTNAG 5 cut(s) 467, 1040, 1083, 1123, 1251
DpnI GATC 5 cut(s) 59, 255, 513, 624, 819
DpnII GATC 5 cut(s) 57, 253, 511, 622, 817
Eam1104I CTCTTC 2 cut(s) 190, 739
EarI CTCTTC 2 cut(s) 190, 739
Eco130I CCWWGG 1 cut(s) 1157
Eco47I GGWCC 3 cut(s) 126, 162, 547
Eco57I CTGAAG 2 cut(s) 563, 1232
Eco88I CYCGRG 1 cut(s) 535
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoO109I RGGNCCY 2 cut(s) 126, 547
EcoT14I CCWWGG 1 cut(s) 1157
ErhI CCWWGG 1 cut(s) 1157
Esp3I CGTCTC 1 cut(s) 1016
FaeI CATG 5 cut(s) 106, 419, 557, 755, 856
FalI AAGNNNNNCTT 2 cut(s) 1259, 1291
FaqI GGGAC 4 cut(s) 308, 506, 853, 1254
FatI CATG 5 cut(s) 102, 415, 553, 751, 852
Fnu4HI GCNGC 3 cut(s) 100, 607, 1079
FokI GGATG 4 cut(s) 742, 842, 1196, 1384
Fsp4HI GCNGC 3 cut(s) 100, 607, 1079
FspBI CTAG 6 cut(s) 80, 381, 423, 567, 872, 903
GlaI GCGC 1 cut(s) 373
GluI GCNGC 3 cut(s) 100, 607, 1079
HaeIII GGCC 1 cut(s) 739
HapII CCGG 1 cut(s) 15
HgaI GACGC 3 cut(s) 305, 712, 998
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 1009
Hin1II CATG 5 cut(s) 106, 419, 557, 755, 856
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 803
HinfI GANTC 5 cut(s) 116, 538, 772, 899, 1233
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 2 cut(s) 162, 1100
Hpy188I TCNGA 4 cut(s) 12, 543, 896, 1389
Hpy188III TCNNGA 6 cut(s) 179, 535, 752, 903, 1109, 1276
Hpy8I GTNNAC 2 cut(s) 162, 1100
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 2 cut(s) 538, 956
HpyCH4III ACNGT 6 cut(s) 444, 765, 1097, 1152, 1245, 1322
HpyCH4IV ACGT 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 5 cut(s) 467, 1040, 1083, 1123, 1251
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 1009
Hsp92II CATG 5 cut(s) 106, 419, 557, 755, 856
HspAI GCGC 1 cut(s) 372
Kzo9I GATC 5 cut(s) 57, 253, 511, 622, 817
LmnI GCTCC 1 cut(s) 860
Lsp1109I GCAGC 3 cut(s) 86, 593, 1065
LweI GCATC 2 cut(s) 205, 784
MaeI CTAG 6 cut(s) 80, 381, 423, 567, 872, 903
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 4 cut(s) 86, 668, 1132, 1203
MalI GATC 5 cut(s) 59, 255, 513, 624, 819
MboI GATC 5 cut(s) 57, 253, 511, 622, 817
MboII GAAGA 9 cut(s) 34, 207, 632, 710, 712, 756, 1124, 1225, 1291
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 2 cut(s) 285, 1102
MluCI AATT 7 cut(s) 314, 398, 673, 841, 957, 1027, 1063
MlyI GAGTC 2 cut(s) 547, 766
MmeI TCCRAC 1 cut(s) 934
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 4 cut(s) 452, 584, 876, 1377
MslI CAYNNNNRTG 3 cut(s) 452, 756, 1388
MspI CCGG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 5 cut(s) 57, 253, 511, 622, 817
NlaIII CATG 5 cut(s) 106, 419, 557, 755, 856
NlaIV GGNNCC 2 cut(s) 171, 862
NmuCI GTSAC 2 cut(s) 86, 1203
NspI RCATGY 1 cut(s) 106
PaeI GCATGC 1 cut(s) 106
PagI TCATGA 1 cut(s) 751
PcsI WCGNNNNNNNCGW 3 cut(s) 244, 253, 303
PctI GAATGC 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 3 cut(s) 116, 899, 1233
PflFI GACNNNGTC 1 cut(s) 237
PflMI CCANNNNNTGG 1 cut(s) 1372
PkrI GCNGC 3 cut(s) 101, 608, 1080
PleI GAGTC 2 cut(s) 546, 766
PpsI GAGTC 2 cut(s) 546, 766
PpuMI RGGWCCY 2 cut(s) 126, 547
PshBI ATTAAT 1 cut(s) 452
Psp5II RGGWCCY 2 cut(s) 126, 547
PspN4I GGNNCC 2 cut(s) 171, 862
PspPI GGNCC 3 cut(s) 126, 162, 547
PspPPI RGGWCCY 2 cut(s) 126, 547
PsuI RGATCY 1 cut(s) 622
PsyI GACNNNGTC 1 cut(s) 237
RsaI GTAC 1 cut(s) 1335
RsaNI GTAC 1 cut(s) 1334
RseI CAYNNNNRTG 3 cut(s) 452, 756, 1388
SaqAI TTAA 4 cut(s) 452, 584, 876, 1377
SatI GCNGC 3 cut(s) 100, 607, 1079
Sau3AI GATC 5 cut(s) 57, 253, 511, 622, 817
Sau96I GGNCC 3 cut(s) 126, 162, 547
SchI GAGTC 2 cut(s) 547, 766
SduI GDGCHC 2 cut(s) 285, 1102
SfaNI GCATC 2 cut(s) 205, 784
SinI GGWCC 3 cut(s) 126, 162, 547
SmiMI CAYNNNNRTG 3 cut(s) 452, 756, 1388
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
SpeI ACTAGT 1 cut(s) 79
SphI GCATGC 1 cut(s) 106
Sse9I AATT 7 cut(s) 314, 398, 673, 841, 957, 1027, 1063
SsiI CCGC 1 cut(s) 1331
SspMI CTAG 6 cut(s) 80, 381, 423, 567, 872, 903
StyI CCWWGG 1 cut(s) 1157
TaaI ACNGT 6 cut(s) 444, 765, 1097, 1152, 1245, 1322
TaiI ACGT 1 cut(s) 309
TaqI TCGA 4 cut(s) 47, 232, 498, 792
TaqII GACCGA 1 cut(s) 207
TasI AATT 7 cut(s) 314, 398, 673, 841, 957, 1027, 1063
TfiI GAWTC 3 cut(s) 116, 899, 1233
Tru1I TTAA 4 cut(s) 452, 584, 876, 1377
Tru9I TTAA 4 cut(s) 452, 584, 876, 1377
TscAI CASTG 6 cut(s) 67, 283, 471, 664, 1100, 1250
TseFI GTSAC 2 cut(s) 86, 1203
TseI GCWGC 3 cut(s) 99, 606, 1078
Tsp45I GTSAC 2 cut(s) 86, 1203
TspDTI ATGAA 3 cut(s) 90, 774, 1372
TspGWI ACGGA 2 cut(s) 121, 651
TspRI CASTG 6 cut(s) 67, 283, 471, 664, 1100, 1250
Tth111I GACNNNGTC 1 cut(s) 237
Van91I CCANNNNNTGG 1 cut(s) 1372
VneI GTGCAC 1 cut(s) 1098
VpaK11BI GGWCC 3 cut(s) 126, 162, 547
VspI ATTAAT 1 cut(s) 452
XagI CCTNNNNNAGG 1 cut(s) 522
XapI RAATTY 2 cut(s) 314, 957
XbaI TCTAGA 1 cut(s) 902
XceI RCATGY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 1164
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 6 cut(s) 80, 381, 423, 567, 872, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.