Rh3CG108200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000079
Physical Location & Seq
Forward (+)
8521256 .. 8524949
3694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG108200.1

Sequence Viewer

Length: 1188 bp
ATGAAAAAGGGTTCGAACTCAAAGCGTCGAAAACGATGCACCGAAGATAGAATCAGTGAATTGCCAGATGCAATTCTTTGCCACATTCTGTCTTTCCTTTCAACAGTTGAGGCTGTAAAGACCAGTGTTTTATCACACAGATGGGAGAATGTGTGGGCTTCTGTGCCCACTATAGACGTATGTGATTATGATCCAAAAGAATTCGACTGCGATAGTTTTTCGATGTTTCTTGATAATCTACTTTTCGCTCATGACTCCTTGAAAGTTCATCGGTTCCGCATTTGCTGTACTAAGATGGTGGATCCCCTTCTGTTTGATTATTGGACTAGCACTGCCATTGGCTGTAATGTTGTTGAACTCGATCTTGGTATTATTCCCATGGGTTCTGTGTACTCGTCACTTCCGCCCCAGTGTTTCGAGTTGCCAGGAAGCCTTTTCGTGATGAGAAGTTTGGAGAAGTTGAAGCTGAGCCTGCAATCGTTTATCACCATTACTCCTGAACCAAATTGGTTCCCAAGTCTCAAGTTTCTCCATGTTTCAGTCTCATTTGCTGGTTCTCATCTGATGGAGAACCTCTTTTCTTGCTGCCCTGTACTTGAAGAGTTGATTTTTGATGCGGACCCTGAATATGATGATGATTCAGTTGCTAACGTTAACATCTCTGCACCGAAGCTGAAAAGACTACAAATAAGCTTGTTCCTAGAAACATATGATCTAGAGGTAGTAGAATATGAGCACAAACTTTTTATCAATGCCAATGCTCCAAATCTTGAAAAGTTCACTTTCGACGGCAATCTTTTGGCAATCTATTCCTCGAGCAATGCCAAATCCCTGAACGAAGCCAAGATTGATTGCGCAGACCTGCATGCAGGTCAAGAGCTTGACTATCACCTTGATGCTGCTGATAATTTGCACAGGCTTTTCACAGGAATTTTGAATGTTACTTACCTGTCAGTTTCAGCTCCTATTTTTGGGGATCCCCACATTGTACATCAGTATCATCTCCCTACATTTGTTAATTTGAAGCACTTGAAGCTACTTCTTCAAGCTTGCTGCTCTTGGCAACCATTGATTAGTTTTCTGAATGCATCGCCAAATCTGGAATCTCTTGTCTTGAAAAAGGCGAGTGTACATGGCTTTACACCCTTACTAACTGTATTGATAAATGAGAATTTTGAAATATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

395

Amino Acids

44.66

Weight (kDa)

5.27

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 56 1.2e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 87 - 373 7.7e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 108 - 266 6.7e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 856
Acc36I ACCTGC 2 cut(s) 860, 870
AciI CCGC 3 cut(s) 277, 404, 617
AclI AACGTT 1 cut(s) 651
AclWI GGATC 5 cut(s) 185, 296, 309, 971, 984
AcsI RAATTY 3 cut(s) 200, 930, 1171
AfaI GTAC 5 cut(s) 289, 392, 594, 990, 1131
AfiI CCNNNNNNNGG 1 cut(s) 971
AjnI CCWGG 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 348, 380
AluBI AGCT 7 cut(s) 466, 673, 693, 880, 962, 1036, 1049
AluI AGCT 7 cut(s) 466, 673, 693, 880, 962, 1036, 1049
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 2 cut(s) 524, 547
AlwI GGATC 5 cut(s) 185, 296, 309, 971, 984
Ama87I CYCGRG 1 cut(s) 814
ApeKI GCWGC 3 cut(s) 585, 899, 1053
ApoI RAATTY 3 cut(s) 200, 930, 1171
AspLEI GCGC 1 cut(s) 857
AspS9I GGNCC 1 cut(s) 619
AsuHPI GGTGA 2 cut(s) 478, 881
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 814
AvaII GGWCC 1 cut(s) 619
BaeGI GKGCMC 1 cut(s) 168
BaeI ACNNNNGTAYC 2 cut(s) 980, 1013
BamHI GGATCC 2 cut(s) 301, 976
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 3 cut(s) 572, 886, 1040
BccI CCATC 3 cut(s) 135, 289, 559
BceAI ACGGC 1 cut(s) 805
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 426
BcoDI GTCTC 2 cut(s) 524, 547
BfaI CTAG 3 cut(s) 327, 701, 716
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 2 cut(s) 860, 870
BisI GCNGC 3 cut(s) 586, 900, 1054
BlpI GCTNAGC 1 cut(s) 467
BlsI GCNGC 3 cut(s) 587, 901, 1055
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 1 cut(s) 619
BmeT110I CYCGRG 1 cut(s) 814
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 5 cut(s) 275, 303, 512, 621, 978
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 5 cut(s) 26, 58, 604, 886, 1097
BmuI ACTGGG 1 cut(s) 403
Bpu1102I GCTNAGC 1 cut(s) 467
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 478, 508
Bsc4I CCNNNNNNNGG 1 cut(s) 971
Bse1I ACTGG 2 cut(s) 123, 409
Bse3DI GCAATG 1 cut(s) 826
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 378
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 971
BseMI GCAATG 1 cut(s) 826
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 2 cut(s) 123, 409
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 3 cut(s) 572, 886, 1040
BsgI GTGCAG 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 1 cut(s) 814
BslI CCNNNNNNNGG 1 cut(s) 971
BsmAI GTCTC 2 cut(s) 524, 547
BsmI GAATGC 1 cut(s) 1090
BsoBI CYCGRG 1 cut(s) 814
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 168, 738
Bsp1407I TGTACA 2 cut(s) 988, 1129
Bsp143I GATC 5 cut(s) 190, 301, 361, 712, 976
Bsp1720I GCTNAGC 1 cut(s) 467
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 3 cut(s) 277, 404, 617
BspCNI CTCAG 1 cut(s) 459
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 5 cut(s) 275, 303, 512, 621, 978
BspMI ACCTGC 2 cut(s) 860, 870
BspPI GGATC 5 cut(s) 185, 296, 309, 971, 984
BspT104I TTCGAA 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 826
BsrGI TGTACA 2 cut(s) 988, 1129
BsrI ACTGG 2 cut(s) 123, 409
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 5 cut(s) 190, 301, 361, 712, 976
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 106, 1156
Bst6I CTCTTC 1 cut(s) 594
BstAUI TGTACA 2 cut(s) 988, 1129
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 3 cut(s) 473, 867, 1051
BstDEI CTNAG 2 cut(s) 291, 467
BstDSI CCRYGG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 857
BstKTI GATC 5 cut(s) 193, 304, 364, 715, 979
BstMAI GTCTC 2 cut(s) 524, 547
BstMBI GATC 5 cut(s) 190, 301, 361, 712, 976
BstMWI GCNNNNNNNGC 2 cut(s) 472, 1033
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 572, 886, 1040
BstX2I RGATCY 2 cut(s) 301, 976
BstYI RGATCY 2 cut(s) 301, 976
BtgI CCRYGG 1 cut(s) 378
BtgZI GCGATG 1 cut(s) 1074
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 4 cut(s) 61, 130, 330, 416
BveI ACCTGC 2 cut(s) 860, 870
Cac8I GCNNGC 3 cut(s) 473, 867, 1051
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 857
Cfr13I GGNCC 1 cut(s) 619
CseI GACGC 1 cut(s) 14
Csp6I GTAC 5 cut(s) 288, 391, 593, 989, 1130
CviAII CATG 5 cut(s) 251, 379, 533, 866, 1133
CviQI GTAC 5 cut(s) 288, 391, 593, 989, 1130
DdeI CTNAG 2 cut(s) 291, 467
DpnI GATC 5 cut(s) 192, 303, 363, 714, 978
DpnII GATC 5 cut(s) 190, 301, 361, 712, 976
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
EciI GGCGGA 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 619
Eco88I CYCGRG 1 cut(s) 814
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 378
EcoT22I ATGCAT 1 cut(s) 1090
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 5 cut(s) 254, 382, 536, 869, 1136
FatI CATG 5 cut(s) 250, 378, 532, 865, 1132
FauNDI CATATG 1 cut(s) 709
Fnu4HI GCNGC 3 cut(s) 586, 900, 1054
Fsp4HI GCNGC 3 cut(s) 586, 900, 1054
FspBI CTAG 3 cut(s) 327, 701, 716
FspI TGCGCA 1 cut(s) 856
GlaI GCGC 1 cut(s) 856
GluI GCNGC 3 cut(s) 586, 900, 1054
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 857
Hin1II CATG 5 cut(s) 254, 382, 536, 869, 1136
Hin6I GCGC 1 cut(s) 855
HinP1I GCGC 1 cut(s) 855
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 2 cut(s) 691, 1047
HinfI GANTC 4 cut(s) 51, 254, 638, 1103
HpaI GTTAAC 1 cut(s) 655
HphI GGTGA 2 cut(s) 478, 881
Hpy166II GTNNAC 4 cut(s) 391, 655, 780, 1130
Hpy188I TCNGA 2 cut(s) 564, 1083
Hpy188III TCNNGA 9 cut(s) 230, 251, 439, 497, 716, 770, 875, 1100, 1114
Hpy8I GTNNAC 4 cut(s) 391, 655, 780, 1130
Hpy99I CGWCG 2 cut(s) 30, 791
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 2 cut(s) 106, 1156
HpyCH4IV ACGT 2 cut(s) 177, 651
HpyCH4V TGCA 8 cut(s) 39, 71, 475, 665, 865, 869, 913, 1088
HpyF10VI GCNNNNNNNGC 2 cut(s) 472, 1033
HpyF3I CTNAG 2 cut(s) 291, 467
HpySE526I ACGT 2 cut(s) 177, 651
Hsp92II CATG 5 cut(s) 254, 382, 536, 869, 1136
HspAI GCGC 1 cut(s) 855
KspAI GTTAAC 1 cut(s) 655
Kzo9I GATC 5 cut(s) 190, 301, 361, 712, 976
LmnI GCTCC 2 cut(s) 766, 967
Lsp1109I GCAGC 3 cut(s) 572, 886, 1040
LweI GCATC 5 cut(s) 26, 58, 604, 886, 1097
MaeI CTAG 3 cut(s) 327, 701, 716
MaeII ACGT 2 cut(s) 177, 651
MaeIII GTNAC 2 cut(s) 396, 940
MalI GATC 5 cut(s) 192, 303, 363, 714, 978
MboI GATC 5 cut(s) 190, 301, 361, 712, 976
MboII GAAGA 3 cut(s) 56, 611, 1034
MflI RGATCY 2 cut(s) 301, 976
MhlI GDGCHC 2 cut(s) 168, 738
MluCI AATT 8 cut(s) 59, 72, 200, 505, 907, 930, 1018, 1171
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 4 cut(s) 103, 584, 712, 823
Mph1103I ATGCAT 1 cut(s) 1090
MseI TTAA 3 cut(s) 654, 1017, 1186
MslI CAYNNNNRTG 2 cut(s) 139, 894
MspR9I CCNGG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 1090
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 472, 1033
NcoI CCATGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 709
NdeII GATC 5 cut(s) 190, 301, 361, 712, 976
NlaIII CATG 5 cut(s) 254, 382, 536, 869, 1136
NlaIV GGNNCC 5 cut(s) 275, 303, 512, 621, 978
NmuCI GTSAC 1 cut(s) 396
NsbI TGCGCA 1 cut(s) 856
NsiI ATGCAT 1 cut(s) 1090
NspI RCATGY 1 cut(s) 869
NspV TTCGAA 1 cut(s) 14
PaeI GCATGC 1 cut(s) 869
PaeR7I CTCGAG 1 cut(s) 814
PagI TCATGA 1 cut(s) 250
PctI GAATGC 1 cut(s) 1090
PfeI GAWTC 3 cut(s) 51, 638, 1103
PkrI GCNGC 3 cut(s) 587, 901, 1055
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Psp1406I AACGTT 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 5 cut(s) 275, 303, 512, 621, 978
PspPI GGNCC 1 cut(s) 619
PspXI VCTCGAGB 1 cut(s) 814
PsuI RGATCY 2 cut(s) 301, 976
RsaI GTAC 5 cut(s) 289, 392, 594, 990, 1131
RsaNI GTAC 5 cut(s) 288, 391, 593, 989, 1130
RseI CAYNNNNRTG 2 cut(s) 139, 894
SaqAI TTAA 3 cut(s) 654, 1017, 1186
SatI GCNGC 3 cut(s) 586, 900, 1054
Sau3AI GATC 5 cut(s) 190, 301, 361, 712, 976
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 2 cut(s) 168, 738
SfaNI GCATC 5 cut(s) 26, 58, 604, 886, 1097
SfcI CTRYAG 1 cut(s) 171
Sfr274I CTCGAG 1 cut(s) 814
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 1 cut(s) 619
SlaI CTCGAG 1 cut(s) 814
SmiMI CAYNNNNRTG 2 cut(s) 139, 894
SmlI CTYRAG 2 cut(s) 521, 814
SmoI CTYRAG 2 cut(s) 521, 814
SphI GCATGC 1 cut(s) 869
Sse9I AATT 8 cut(s) 59, 72, 200, 505, 907, 930, 1018, 1171
SsiI CCGC 3 cut(s) 277, 404, 617
SspI AATATT 1 cut(s) 1182
SspMI CTAG 3 cut(s) 327, 701, 716
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 106, 1156
TaiI ACGT 2 cut(s) 180, 654
TaqI TCGA 8 cut(s) 14, 28, 204, 221, 360, 417, 786, 815
TasI AATT 8 cut(s) 59, 72, 200, 505, 907, 930, 1018, 1171
TatI WGTACW 5 cut(s) 287, 390, 592, 988, 1129
TfiI GAWTC 3 cut(s) 51, 638, 1103
Tru1I TTAA 3 cut(s) 654, 1017, 1186
Tru9I TTAA 3 cut(s) 654, 1017, 1186
TscAI CASTG 4 cut(s) 61, 130, 337, 416
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 3 cut(s) 585, 899, 1053
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 2 cut(s) 17, 257
TspRI CASTG 4 cut(s) 61, 130, 337, 416
VpaK11BI GGWCC 1 cut(s) 619
XapI RAATTY 3 cut(s) 200, 930, 1171
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 1 cut(s) 869
XhoI CTCGAG 1 cut(s) 814
XspI CTAG 3 cut(s) 327, 701, 716
Zsp2I ATGCAT 1 cut(s) 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.